Literature DB >> 23435907

Mutation screen and RNA analysis disclose the changed splicing of the E-cadherin transcription in gastric cancer.

Xiaowei Li1, Yafan Gao, Yiyuan Pan, Yan Pan, Lifeng Wang, Nong Xiao, Qiong He, Yimei Fan, Yaping Wang.   

Abstract

Gastric cancer (GC) is considered to be one of the leading cancers in East Asians, and mutations in the CDH1 gene and the reduced expression of E-cadherin are the most frequent genetic alterations in gastric cancer. In this paper, we reported two novel germline CDH1 nonsynonymous mutations, c.1296 C>G (N432 K) and c.1297 G>A (D433 N) detected in sporadic Chinese GC patients. RNA splicing analysis was used to evaluate mutations' effects on E-cadherin transcription and exon definition. We revealed that the c.1296 C>G (N432 K) variant can generate the E-cadherin exon9-skipping and may be a disease-causing mutation, while the c.1297 G>A (D433 N) mutation not. Moreover, we demonstrated the E-cadherin 1054del83 transcript is a frequent event in Chinese GC patients.

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Year:  2013        PMID: 23435907     DOI: 10.1007/s10689-013-9619-x

Source DB:  PubMed          Journal:  Fam Cancer        ISSN: 1389-9600            Impact factor:   2.375


  30 in total

1.  Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing.

Authors:  Robert J Sims; Scott Millhouse; Chi-Fu Chen; Brian A Lewis; Hediye Erdjument-Bromage; Paul Tempst; James L Manley; Danny Reinberg
Journal:  Mol Cell       Date:  2007-11-30       Impact factor: 17.970

Review 2.  The SR protein family of splicing factors: master regulators of gene expression.

Authors:  Jennifer C Long; Javier F Caceres
Journal:  Biochem J       Date:  2009-01-01       Impact factor: 3.857

3.  Aberrant splicing of the E-cadherin transcript is a novel mechanism of gene silencing in chronic lymphocytic leukemia cells.

Authors:  Sanjai Sharma; Alan Lichtenstein
Journal:  Blood       Date:  2009-09-10       Impact factor: 22.113

Review 4.  Regulation of cell-cell adhesion by the cadherin-catenin complex.

Authors:  W James Nelson
Journal:  Biochem Soc Trans       Date:  2008-04       Impact factor: 5.407

5.  Improved splice site detection in Genie.

Authors:  M G Reese; F H Eeckman; D Kulp; D Haussler
Journal:  J Comput Biol       Date:  1997       Impact factor: 1.479

6.  Hereditary diffuse gastric cancer due to a previously undescribed CDH1 splice site mutation.

Authors:  Karen E Matsukuma; Franklin M Mullins; Lisa Dietz; James L Zehnder; James M Ford; Nicolette M Chun; Iris Schrijver
Journal:  Hum Pathol       Date:  2010-08       Impact factor: 3.466

7.  Exon 11 skipping of E-cadherin RNA downregulates its expression in head and neck cancer cells.

Authors:  Sanjai Sharma; Wei Liao; Xiaofeng Zhou; David T W Wong; Alan Lichtenstein
Journal:  Mol Cancer Ther       Date:  2011-07-15       Impact factor: 6.261

8.  Intragenic deletion of CDH1 as the inactivating mechanism of the wild-type allele in an HDGC tumour.

Authors:  Carla Oliveira; Joyce de Bruin; Sérgio Nabais; Marjolijn Ligtenberg; Cátia Moutinho; Fokko M Nagengast; Raquel Seruca; Han van Krieken; Fátima Carneiro
Journal:  Oncogene       Date:  2004-03-18       Impact factor: 9.867

Review 9.  Unbalanced alternative splicing and its significance in cancer.

Authors:  Julian P Venables
Journal:  Bioessays       Date:  2006-04       Impact factor: 4.345

10.  Founder and recurrent CDH1 mutations in families with hereditary diffuse gastric cancer.

Authors:  Pardeep Kaurah; Andrée MacMillan; Niki Boyd; Janine Senz; Alessandro De Luca; Nicki Chun; Gianpaolo Suriano; Sonya Zaor; Lori Van Manen; Cathy Gilpin; Sarah Nikkel; Mary Connolly-Wilson; Scott Weissman; Wendy S Rubinstein; Courtney Sebold; Robert Greenstein; Jennifer Stroop; Dwight Yim; Benoit Panzini; Wendy McKinnon; Marc Greenblatt; Debrah Wirtzfeld; Daniel Fontaine; Daniel Coit; Sam Yoon; Daniel Chung; Gregory Lauwers; Antonio Pizzuti; Carlos Vaccaro; Maria Ana Redal; Carla Oliveira; Marc Tischkowitz; Sylviane Olschwang; Steven Gallinger; Henry Lynch; Jane Green; James Ford; Paul Pharoah; Bridget Fernandez; David Huntsman
Journal:  JAMA       Date:  2007-06-03       Impact factor: 56.272

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  3 in total

1.  Identification of a comprehensive spectrum of genetic factors for hereditary breast cancer in a Chinese population by next-generation sequencing.

Authors:  Xiaochen Yang; Jiong Wu; Jingsong Lu; Guangyu Liu; Genhong Di; Canming Chen; Yifeng Hou; Menghong Sun; Wentao Yang; Xiaojing Xu; Ying Zhao; Xin Hu; Daqiang Li; Zhigang Cao; Xiaoyan Zhou; Xiaoyan Huang; Zhebin Liu; Huan Chen; Yanzi Gu; Yayun Chi; Xia Yan; Qixia Han; Zhenzhou Shen; Zhimin Shao; Zhen Hu
Journal:  PLoS One       Date:  2015-04-30       Impact factor: 3.240

2.  Epigenetic regulation of CDH1 exon 8 alternative splicing in gastric cancer.

Authors:  Xiao-Wei Li; Bing-Yu Shi; Qing-Lan Yang; Jie Wu; Hui-Min Wu; Yu-Feng Wang; Zhi-Jiao Wu; Yi-Mei Fan; Ya-Ping Wang
Journal:  BMC Cancer       Date:  2015-12-16       Impact factor: 4.430

3.  Transcriptome-wide analysis of alternative mRNA splicing signature in the diagnosis and prognosis of stomach adenocarcinoma.

Authors:  Yu Shi; Zuhua Chen; Juanjuan Gao; Si Wu; Haer Gao; Guoshuang Feng
Journal:  Oncol Rep       Date:  2018-08-02       Impact factor: 3.906

  3 in total

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