Literature DB >> 22222791

A transcription activator-like effector toolbox for genome engineering.

Neville E Sanjana1, Le Cong, Yang Zhou, Margaret M Cunniff, Guoping Feng, Feng Zhang.   

Abstract

Transcription activator-like effectors (TALEs) are a class of naturally occurring DNA-binding proteins found in the plant pathogen Xanthomonas sp. The DNA-binding domain of each TALE consists of tandem 34-amino acid repeat modules that can be rearranged according to a simple cipher to target new DNA sequences. Customized TALEs can be used for a wide variety of genome engineering applications, including transcriptional modulation and genome editing. Here we describe a toolbox for rapid construction of custom TALE transcription factors (TALE-TFs) and nucleases (TALENs) using a hierarchical ligation procedure. This toolbox facilitates affordable and rapid construction of custom TALE-TFs and TALENs within 1 week and can be easily scaled up to construct TALEs for multiple targets in parallel. We also provide details for testing the activity in mammalian cells of custom TALE-TFs and TALENs using quantitative reverse-transcription PCR and Surveyor nuclease, respectively. The TALE toolbox described here will enable a broad range of biological applications.

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Year:  2012        PMID: 22222791      PMCID: PMC3684555          DOI: 10.1038/nprot.2011.431

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  59 in total

1.  Regulation of selected genome loci using de novo-engineered transcription activator-like effector (TALE)-type transcription factors.

Authors:  Robert Morbitzer; Patrick Römer; Jens Boch; Thomas Lahaye
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-24       Impact factor: 11.205

2.  Structure-guided reprogramming of serine recombinase DNA sequence specificity.

Authors:  Thomas Gaj; Andrew C Mercer; Charles A Gersbach; Russell M Gordley; Carlos F Barbas
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

3.  De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaks.

Authors:  Magdy M Mahfouz; Lixin Li; Md Shamimuzzaman; Anjar Wibowo; Xiaoyun Fang; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-24       Impact factor: 11.205

4.  A TALE nuclease architecture for efficient genome editing.

Authors:  Jeffrey C Miller; Siyuan Tan; Guijuan Qiao; Kyle A Barlow; Jianbin Wang; Danny F Xia; Xiangdong Meng; David E Paschon; Elo Leung; Sarah J Hinkley; Gladys P Dulay; Kevin L Hua; Irina Ankoudinova; Gregory J Cost; Fyodor D Urnov; H Steve Zhang; Michael C Holmes; Lei Zhang; Philip D Gregory; Edward J Rebar
Journal:  Nat Biotechnol       Date:  2010-12-22       Impact factor: 54.908

5.  AAV-mediated gene targeting methods for human cells.

Authors:  Iram F Khan; Roli K Hirata; David W Russell
Journal:  Nat Protoc       Date:  2011-03-24       Impact factor: 13.491

Review 6.  TAL effectors are remote controls for gene activation.

Authors:  Heidi Scholze; Jens Boch
Journal:  Curr Opin Microbiol       Date:  2011-01-05       Impact factor: 7.934

7.  Transcriptional activators of human genes with programmable DNA-specificity.

Authors:  René Geissler; Heidi Scholze; Simone Hahn; Jana Streubel; Ulla Bonas; Sven-Erik Behrens; Jens Boch
Journal:  PLoS One       Date:  2011-05-19       Impact factor: 3.240

8.  Assembly of designer TAL effectors by Golden Gate cloning.

Authors:  Ernst Weber; Ramona Gruetzner; Stefan Werner; Carola Engler; Sylvestre Marillonnet
Journal:  PLoS One       Date:  2011-05-19       Impact factor: 3.240

9.  A modular cloning system for standardized assembly of multigene constructs.

Authors:  Ernst Weber; Carola Engler; Ramona Gruetzner; Stefan Werner; Sylvestre Marillonnet
Journal:  PLoS One       Date:  2011-02-18       Impact factor: 3.240

10.  Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription.

Authors:  Feng Zhang; Le Cong; Simona Lodato; Sriram Kosuri; George M Church; Paola Arlotta
Journal:  Nat Biotechnol       Date:  2011-01-19       Impact factor: 54.908

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  286 in total

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Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

2.  Genomic DISC1 Disruption in hiPSCs Alters Wnt Signaling and Neural Cell Fate.

Authors:  Priya Srikanth; Karam Han; Dana G Callahan; Eugenia Makovkina; Christina R Muratore; Matthew A Lalli; Honglin Zhou; Justin D Boyd; Kenneth S Kosik; Dennis J Selkoe; Tracy L Young-Pearse
Journal:  Cell Rep       Date:  2015-08-20       Impact factor: 9.423

3.  Efficient delivery of nuclease proteins for genome editing in human stem cells and primary cells.

Authors:  Jia Liu; Thomas Gaj; Yifeng Yang; Nan Wang; Sailan Shui; Sojung Kim; Chidananda Nagamangala Kanchiswamy; Jin-Soo Kim; Carlos F Barbas
Journal:  Nat Protoc       Date:  2015-10-22       Impact factor: 13.491

4.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

5.  Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription.

Authors:  Luca Giorgetti; Rafael Galupa; Elphège P Nora; Tristan Piolot; France Lam; Job Dekker; Guido Tiana; Edith Heard
Journal:  Cell       Date:  2014-05-08       Impact factor: 41.582

6.  Multiple zebrafish atoh1 genes specify a diversity of neuronal types in the zebrafish cerebellum.

Authors:  Chelsea U Kidwell; Chen-Ying Su; Masahiko Hibi; Cecilia B Moens
Journal:  Dev Biol       Date:  2018-03-13       Impact factor: 3.582

7.  Neurobeachin is required postsynaptically for electrical and chemical synapse formation.

Authors:  Adam C Miller; Lisa H Voelker; Arish N Shah; Cecilia B Moens
Journal:  Curr Biol       Date:  2014-12-04       Impact factor: 10.834

8.  Selective elimination of mitochondrial mutations in the germline by genome editing.

Authors:  Pradeep Reddy; Alejandro Ocampo; Keiichiro Suzuki; Jinping Luo; Sandra R Bacman; Sion L Williams; Atsushi Sugawara; Daiji Okamura; Yuji Tsunekawa; Jun Wu; David Lam; Xiong Xiong; Nuria Montserrat; Concepcion Rodriguez Esteban; Guang-Hui Liu; Ignacio Sancho-Martinez; Dolors Manau; Salva Civico; Francesc Cardellach; Maria Del Mar O'Callaghan; Jaime Campistol; Huimin Zhao; Josep M Campistol; Carlos T Moraes; Juan Carlos Izpisua Belmonte
Journal:  Cell       Date:  2015-04-23       Impact factor: 41.582

9.  CRISPR-Cas9 gene editing causes alternative splicing of the targeting mRNA.

Authors:  Qian Zhang; Yao Fu; Chitra Thakur; Zhuoyue Bi; Priya Wadgaonkar; Yiran Qiu; Liping Xu; M'Kya Rice; Wenxuan Zhang; Bandar Almutairy; Fei Chen
Journal:  Biochem Biophys Res Commun       Date:  2020-05-24       Impact factor: 3.575

10.  An iCRISPR platform for rapid, multiplexable, and inducible genome editing in human pluripotent stem cells.

Authors:  Federico González; Zengrong Zhu; Zhong-Dong Shi; Katherine Lelli; Nipun Verma; Qing V Li; Danwei Huangfu
Journal:  Cell Stem Cell       Date:  2014-06-12       Impact factor: 24.633

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