Literature DB >> 22222205

Histone deacetylase 1 enhances microRNA processing via deacetylation of DGCR8.

Taeko Wada1, Jiro Kikuchi, Yusuke Furukawa.   

Abstract

Relatively little is known about the regulatory mechanisms of the Drosha/DGCR8 complex, which processes miRNAs at the initial step of biogenesis. We found that histone deacetylase 1 (HDAC1) increases the expression levels of mature miRNAs despite repressing the transcription of host genes. HDAC1 is an integral component of the Drosha/DGCR8 complex and enhances miRNA processing by increasing the affinity of DGCR8 to primary miRNA transcripts via deacetylation of critical lysine residues in the RNA-binding domains of DGCR8. This finding suggests that HDACs have two arms for gene silencing: transcriptional repression by promoter histone deacetylation and post-transcriptional inhibition by increasing miRNA abundance.

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Year:  2012        PMID: 22222205      PMCID: PMC3271337          DOI: 10.1038/embor.2011.247

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  26 in total

1.  Histone deacetylases are critical targets of bortezomib-induced cytotoxicity in multiple myeloma.

Authors:  Jiro Kikuchi; Taeko Wada; Rumi Shimizu; Tohru Izumi; Miyuki Akutsu; Kanae Mitsunaga; Kaoru Noborio-Hatano; Masaharu Nobuyoshi; Keiya Ozawa; Yasuhiko Kano; Yusuke Furukawa
Journal:  Blood       Date:  2010-03-29       Impact factor: 22.113

2.  MicroRNA function is globally suppressed in mouse oocytes and early embryos.

Authors:  Nayoung Suh; Lauren Baehner; Felix Moltzahn; Collin Melton; Archana Shenoy; Jing Chen; Robert Blelloch
Journal:  Curr Biol       Date:  2010-01-28       Impact factor: 10.834

3.  Histone deacetylase 1 (HDAC1), but not HDAC2, controls embryonic stem cell differentiation.

Authors:  Oliver M Dovey; Charles T Foster; Shaun M Cowley
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-19       Impact factor: 11.205

4.  Modulation of microRNA processing by p53.

Authors:  Hiroshi I Suzuki; Kaoru Yamagata; Koichi Sugimoto; Takashi Iwamoto; Shigeaki Kato; Kohei Miyazono
Journal:  Nature       Date:  2009-07-23       Impact factor: 49.962

5.  Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells.

Authors:  Alexander Marson; Stuart S Levine; Megan F Cole; Garrett M Frampton; Tobias Brambrink; Sarah Johnstone; Matthew G Guenther; Wendy K Johnston; Marius Wernig; Jamie Newman; J Mauro Calabrese; Lucas M Dennis; Thomas L Volkert; Sumeet Gupta; Jennifer Love; Nancy Hannett; Phillip A Sharp; David P Bartel; Rudolf Jaenisch; Richard A Young
Journal:  Cell       Date:  2008-08-08       Impact factor: 41.582

6.  Maturation of microRNA is hormonally regulated by a nuclear receptor.

Authors:  Kaoru Yamagata; Sally Fujiyama; Saya Ito; Takashi Ueda; Takuya Murata; Masanori Naitou; Ken-Ichi Takeyama; Yasuhiro Minami; Bert W O'Malley; Shigeaki Kato
Journal:  Mol Cell       Date:  2009-10-23       Impact factor: 17.970

7.  Histone deacetylase inhibition elicits an evolutionarily conserved self-renewal program in embryonic stem cells.

Authors:  Carol B Ware; Linlin Wang; Brigham H Mecham; Lanlan Shen; Angelique M Nelson; Merav Bar; Deepak A Lamba; Derek S Dauphin; Brian Buckingham; Bardia Askari; Raymond Lim; Muneesh Tewari; Stanley M Gartler; Jean-Pierre Issa; Paul Pavlidis; Zhijun Duan; C Anthony Blau
Journal:  Cell Stem Cell       Date:  2009-04-03       Impact factor: 24.633

8.  Expression levels of histone deacetylases determine the cell fate of hematopoietic progenitors.

Authors:  Taeko Wada; Jiro Kikuchi; Noriko Nishimura; Rumi Shimizu; Toshio Kitamura; Yusuke Furukawa
Journal:  J Biol Chem       Date:  2009-09-07       Impact factor: 5.157

9.  Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome.

Authors:  Jing Zhao; Bryan K Sun; Jennifer A Erwin; Ji-Joon Song; Jeannie T Lee
Journal:  Science       Date:  2008-10-31       Impact factor: 47.728

10.  Primary microRNA transcripts are processed co-transcriptionally.

Authors:  Mariangela Morlando; Monica Ballarino; Natalia Gromak; Francesca Pagano; Irene Bozzoni; Nick J Proudfoot
Journal:  Nat Struct Mol Biol       Date:  2008-09       Impact factor: 15.369

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  36 in total

1.  Promoter methylation confers kidney-specific expression of the Klotho gene.

Authors:  Masahiro Azuma; Daisuke Koyama; Jiro Kikuchi; Hiromichi Yoshizawa; Dissayabutra Thasinas; Kazuhiro Shiizaki; Makoto Kuro-o; Yusuke Furukawa; Eiji Kusano
Journal:  FASEB J       Date:  2012-07-10       Impact factor: 5.191

Review 2.  Dysregulation of microRNA biogenesis machinery in cancer.

Authors:  Akiko Hata; Risa Kashima
Journal:  Crit Rev Biochem Mol Biol       Date:  2015-12-01       Impact factor: 8.250

Review 3.  Human RNAi pathway: crosstalk with organelles and cells.

Authors:  Sadegh Azimzadeh Jamalkandi; Esmaeel Azadian; Ali Masoudi-Nejad
Journal:  Funct Integr Genomics       Date:  2013-11-07       Impact factor: 3.410

Review 4.  Regulation of microRNA biogenesis.

Authors:  Minju Ha; V Narry Kim
Journal:  Nat Rev Mol Cell Biol       Date:  2014-07-16       Impact factor: 94.444

5.  Importance of miRNA stability and alternative primary miRNA isoforms in gene regulation during Drosophila development.

Authors:  Li Zhou; Mandy Yu Theng Lim; Prameet Kaur; Abil Saj; Diane Bortolamiol-Becet; Vikneswaran Gopal; Nicholas Tolwinski; Greg Tucker-Kellogg; Katsutomo Okamura
Journal:  Elife       Date:  2018-07-19       Impact factor: 8.140

6.  Processing of microRNA primary transcripts requires heme in mammalian cells.

Authors:  Sara H Weitz; Ming Gong; Ian Barr; Shimon Weiss; Feng Guo
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-21       Impact factor: 11.205

Review 7.  Alteration of miRNA activity via context-specific modifications of Argonaute proteins.

Authors:  David Jee; Eric C Lai
Journal:  Trends Cell Biol       Date:  2014-05-24       Impact factor: 20.808

Review 8.  Role of microRNAs in the immune system, inflammation and cancer.

Authors:  Jennifer Raisch; Arlette Darfeuille-Michaud; Hang Thi Thu Nguyen
Journal:  World J Gastroenterol       Date:  2013-05-28       Impact factor: 5.742

9.  An arrayed RNA interference genome-wide screen identifies candidate genes involved in the MicroRNA 21 biogenesis pathway.

Authors:  David Shum; Bhavneet Bhinder; Christina N Ramirez; Constantin Radu; Paul A Calder; Lesslie Beauchamp; T Farazi; M Landthaler; T Tuschi; Susan Magdaleno; Hakim Djaballah
Journal:  Assay Drug Dev Technol       Date:  2012-11-15       Impact factor: 1.738

10.  The novel orally active proteasome inhibitor K-7174 exerts anti-myeloma activity in vitro and in vivo by down-regulating the expression of class I histone deacetylases.

Authors:  Jiro Kikuchi; Satoshi Yamada; Daisuke Koyama; Taeko Wada; Masaharu Nobuyoshi; Tohru Izumi; Miyuki Akutsu; Yasuhiko Kano; Yusuke Furukawa
Journal:  J Biol Chem       Date:  2013-07-22       Impact factor: 5.157

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