Literature DB >> 22220083

N-(3-Chloro-phen-yl)-3-nitro-pyridin-2-amine.

Aina Mardia Akhmad Aznan, Zanariah Abdullah, Seik Weng Ng, Edward R T Tiekink.   

Abstract

The dihedral angle between the benzene and pyridyl rings in the title compound, C(11)H(8)ClN(3)O(2), is 22.65 (10)°, indicating a twisted mol-ecule. The amine H and nitro O atoms form a donor-acceptor pair for an intra-molecular N-H⋯O hydrogen bond so that the nitro group is almost coplanar with the pyridine ring to which it is connected [O-N-C-C torsion angle = 7.4 (3)°]. The pyridine N and Cl atoms are approximately syn. The crystal packing features C-H⋯Cl inter-actions that lead to undulating supra-molecular chains along [101]. These are connected into sheets by π-π inter-actions occurring between the benzene rings and between the pyridine rings of translationally related mol-ecules along the b axis [centroid-centroid distances = length of b axis = 3.7157 (2) Å].

Entities:  

Year:  2011        PMID: 22220083      PMCID: PMC3247465          DOI: 10.1107/S1600536811044011

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of a related pyrimidine amine derivative, see: Aznan Akhmad et al. (2010 ▶).

Experimental

Crystal data

C11H8ClN3O2 M = 249.65 Monoclinic, a = 15.8781 (10) Å b = 3.7157 (2) Å c = 18.0651 (13) Å β = 102.252 (6)° V = 1041.53 (11) Å3 Z = 4 Cu Kα radiation μ = 3.21 mm−1 T = 100 K 0.20 × 0.05 × 0.03 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.566, T max = 0.910 3341 measured reflections 1971 independent reflections 1684 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.119 S = 1.06 1971 reflections 158 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.34 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811044011/hb6466sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044011/hb6466Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811044011/hb6466Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H8ClN3O2F(000) = 512
Mr = 249.65Dx = 1.592 Mg m3
Monoclinic, P2/nCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2yacCell parameters from 1441 reflections
a = 15.8781 (10) Åθ = 2.9–74.2°
b = 3.7157 (2) ŵ = 3.21 mm1
c = 18.0651 (13) ÅT = 100 K
β = 102.252 (6)°Prism, orange
V = 1041.53 (11) Å30.20 × 0.05 × 0.03 mm
Z = 4
Agilent SuperNova Dual diffractometer with an Atlas detector1971 independent reflections
Radiation source: SuperNova (Cu) X-ray Source1684 reflections with I > 2σ(I)
MirrorRint = 0.026
Detector resolution: 10.4041 pixels mm-1θmax = 70.0°, θmin = 3.4°
ω scanh = −19→16
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −4→2
Tmin = 0.566, Tmax = 0.910l = −22→20
3341 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0688P)2 + 0.3527P] where P = (Fo2 + 2Fc2)/3
1971 reflections(Δ/σ)max = 0.001
158 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.78774 (3)0.02226 (14)0.66591 (3)0.02816 (19)
O10.66072 (10)0.4237 (5)0.23466 (9)0.0357 (4)
O20.54073 (10)0.6787 (5)0.18194 (9)0.0348 (4)
N10.68353 (11)0.1981 (5)0.37651 (10)0.0227 (4)
N20.55898 (11)0.1975 (5)0.42492 (9)0.0221 (4)
N30.58523 (12)0.5144 (5)0.23471 (10)0.0259 (4)
C10.74388 (13)0.0748 (6)0.44066 (12)0.0217 (4)
C20.73308 (13)0.1013 (5)0.51495 (12)0.0214 (4)
H20.68150.19470.52610.026*
C30.80060 (14)−0.0138 (5)0.57217 (12)0.0225 (5)
C40.87682 (14)−0.1519 (6)0.55902 (13)0.0258 (5)
H40.9216−0.22720.59970.031*
C50.88592 (14)−0.1769 (6)0.48458 (12)0.0268 (5)
H50.9376−0.27190.47380.032*
C60.82038 (14)−0.0648 (6)0.42579 (13)0.0245 (5)
H60.8274−0.08280.37500.029*
C70.59821 (13)0.2730 (5)0.36741 (11)0.0205 (4)
C80.54874 (14)0.4251 (6)0.29929 (11)0.0213 (4)
C90.46195 (14)0.4956 (5)0.29291 (12)0.0228 (5)
H90.42890.59720.24770.027*
C100.42391 (13)0.4171 (6)0.35261 (12)0.0237 (5)
H100.36460.46440.35000.028*
C110.47531 (13)0.2665 (6)0.41660 (11)0.0239 (5)
H110.44890.20810.45760.029*
H1n0.7042 (17)0.237 (8)0.3359 (15)0.041 (8)*
U11U22U33U12U13U23
Cl10.0287 (3)0.0341 (3)0.0202 (3)−0.0026 (2)0.0018 (2)0.0004 (2)
O10.0280 (8)0.0557 (11)0.0255 (9)0.0049 (8)0.0110 (7)0.0076 (8)
O20.0308 (8)0.0474 (10)0.0249 (9)0.0005 (8)0.0030 (7)0.0135 (8)
N10.0213 (8)0.0297 (9)0.0180 (9)0.0012 (7)0.0060 (7)0.0031 (8)
N20.0238 (9)0.0234 (8)0.0194 (9)−0.0014 (7)0.0054 (7)−0.0001 (7)
N30.0267 (10)0.0301 (10)0.0214 (10)−0.0029 (8)0.0061 (8)0.0015 (8)
C10.0215 (10)0.0202 (9)0.0225 (11)−0.0019 (8)0.0025 (8)0.0005 (8)
C20.0207 (10)0.0193 (9)0.0242 (11)−0.0010 (8)0.0049 (8)0.0001 (8)
C30.0249 (10)0.0184 (10)0.0229 (11)−0.0052 (8)0.0020 (8)−0.0003 (8)
C40.0230 (10)0.0223 (10)0.0294 (12)0.0000 (9)−0.0007 (8)0.0018 (9)
C50.0221 (10)0.0254 (10)0.0327 (12)0.0026 (9)0.0055 (9)−0.0006 (9)
C60.0257 (11)0.0232 (10)0.0256 (11)−0.0004 (9)0.0078 (9)−0.0021 (8)
C70.0215 (10)0.0186 (9)0.0217 (10)−0.0008 (8)0.0057 (8)−0.0017 (8)
C80.0255 (10)0.0211 (9)0.0177 (10)−0.0020 (8)0.0056 (8)0.0004 (8)
C90.0231 (10)0.0211 (10)0.0224 (11)0.0002 (8)0.0008 (8)−0.0001 (8)
C100.0198 (10)0.0239 (10)0.0275 (11)−0.0005 (8)0.0055 (8)−0.0036 (9)
C110.0259 (10)0.0243 (11)0.0234 (11)−0.0028 (9)0.0097 (8)−0.0026 (9)
Cl1—C31.753 (2)C3—C41.381 (3)
O1—N31.245 (2)C4—C51.386 (3)
O2—N31.222 (2)C4—H40.9500
N1—C71.358 (3)C5—C61.384 (3)
N1—C11.414 (3)C5—H50.9500
N1—H1n0.88 (3)C6—H60.9500
N2—C111.330 (3)C7—C81.428 (3)
N2—C71.349 (3)C8—C91.383 (3)
N3—C81.447 (3)C9—C101.374 (3)
C1—C21.392 (3)C9—H90.9500
C1—C61.398 (3)C10—C111.384 (3)
C2—C31.389 (3)C10—H100.9500
C2—H20.9500C11—H110.9500
C7—N1—C1130.58 (17)C6—C5—H5119.7
C7—N1—H1n113.9 (18)C4—C5—H5119.7
C1—N1—H1n115.5 (18)C5—C6—C1120.4 (2)
C11—N2—C7119.09 (18)C5—C6—H6119.8
O2—N3—O1122.13 (18)C1—C6—H6119.8
O2—N3—C8118.63 (18)N2—C7—N1118.39 (19)
O1—N3—C8119.25 (18)N2—C7—C8119.10 (18)
C2—C1—C6120.08 (19)N1—C7—C8122.50 (18)
C2—C1—N1124.51 (19)C9—C8—C7120.17 (19)
C6—C1—N1115.33 (18)C9—C8—N3116.86 (19)
C3—C2—C1117.52 (19)C7—C8—N3122.97 (18)
C3—C2—H2121.2C10—C9—C8119.4 (2)
C1—C2—H2121.2C10—C9—H9120.3
C4—C3—C2123.5 (2)C8—C9—H9120.3
C4—C3—Cl1118.72 (17)C9—C10—C11117.50 (19)
C2—C3—Cl1117.73 (16)C9—C10—H10121.3
C3—C4—C5117.9 (2)C11—C10—H10121.3
C3—C4—H4121.1N2—C11—C10124.77 (18)
C5—C4—H4121.1N2—C11—H11117.6
C6—C5—C4120.5 (2)C10—C11—H11117.6
C7—N1—C1—C2−19.5 (4)C1—N1—C7—C8174.6 (2)
C7—N1—C1—C6163.8 (2)N2—C7—C8—C90.4 (3)
C6—C1—C2—C30.2 (3)N1—C7—C8—C9179.9 (2)
N1—C1—C2—C3−176.37 (19)N2—C7—C8—N3−179.92 (19)
C1—C2—C3—C4−0.1 (3)N1—C7—C8—N3−0.5 (3)
C1—C2—C3—Cl1179.50 (15)O2—N3—C8—C97.4 (3)
C2—C3—C4—C5−0.2 (3)O1—N3—C8—C9−172.91 (19)
Cl1—C3—C4—C5−179.74 (16)O2—N3—C8—C7−172.3 (2)
C3—C4—C5—C60.3 (3)O1—N3—C8—C77.4 (3)
C4—C5—C6—C1−0.1 (3)C7—C8—C9—C10−0.1 (3)
C2—C1—C6—C5−0.1 (3)N3—C8—C9—C10−179.82 (18)
N1—C1—C6—C5176.77 (19)C8—C9—C10—C11−0.6 (3)
C11—N2—C7—N1−179.43 (18)C7—N2—C11—C10−0.8 (3)
C11—N2—C7—C80.0 (3)C9—C10—C11—N21.1 (3)
C1—N1—C7—N2−5.9 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1n···O10.88 (3)1.94 (3)2.647 (2)137 (2)
C9—H9···Cl1i0.952.793.665 (2)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1n⋯O10.88 (3)1.94 (3)2.647 (2)137 (2)
C9—H9⋯Cl1i0.952.793.665 (2)153

Symmetry code: (i) .

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