Literature DB >> 22220027

4-(3-Fluoro-phen-yl)-1-(propan-2-yl-idene)thio-semicarbazone.

Barbara Miroslaw, Daniel Szulczyk, Anna E Koziol, Marta Struga.   

Abstract

The title compound, C(10)H(12)FN(3)S, crystallizes in the same space group (P2(1)/c) as two polymorphic forms of 4-phenyl-1-(propan-2-yl-idene)thio-semicarbazone [Jian et al. (2005). Acta Cryst. E61, o653-o654; Venkatraman et al. (2005). Acta Cryst. E61, o3914-o3916]. The arrangement of mol-ecules relative to the twofold screw axes is similar to that in the crystal structure of the lower density polymorph. In the solid state, the mol-ecular conformation is stabilized by an intra-molecular N-H⋯N hydrogen bond. The mol-ecules form centrosymmetric R(2) (2)(8) dimers in the crystal through pairs of N-H⋯S hydrogen bonds.

Entities:  

Year:  2011        PMID: 22220027      PMCID: PMC3247409          DOI: 10.1107/S1600536811042504

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Basu & Das (2011 ▶); Park & Ahn (1985 ▶); Parsons et al. (2000 ▶); Jian et al. (2005 ▶); Venkatraman et al. (2005 ▶). For description of the Cambridge Structural Database, see: Allen (2002 ▶). For the anti­tumor, anti­viral and anti­fungal activity of thio­semicarbazones, see: Kalinowski et al. (2009 ▶); Smee & Sidwell (2003 ▶); Beraldo & Gambino (2004 ▶). For their metal-chelating properties, see: Paterson & Donnelly (2011 ▶); Casas et al. (2000 ▶).

Experimental

Crystal data

C10H12FN3S M = 225.29 Monoclinic, a = 9.038 (2) Å b = 10.515 (2) Å c = 11.869 (2) Å β = 99.77 (3)° V = 1111.6 (4) Å3 Z = 4 Cu Kα radiation μ = 2.48 mm−1 T = 296 K 0.55 × 0.30 × 0.10 mm

Data collection

Kuma KM-4 diffractometer Absorption correction: for a cylinder mounted on the ϕ axis (Dwiggins, 1975 ▶) T min = 0.435, T max = 0.485 3800 measured reflections 1942 independent reflections 1252 reflections with I > 2σ(I) R int = 0.084 3 standard reflections every 100 reflections intensity decay: 3.3%

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.217 S = 1.04 1942 reflections 138 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.39 e Å−3 Data collection: KM-4 Software (Kuma Diffraction, 1991 ▶); cell refinement: KM-4 Software; data reduction: KM-4 Software; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1999 ▶), Mercury (Macrae et al., 2006 ▶) and ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811042504/fy2024sup1.cif Supplementary material file. DOI: 10.1107/S1600536811042504/fy2024Isup2.mol Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042504/fy2024Isup3.hkl Supplementary material file. DOI: 10.1107/S1600536811042504/fy2024Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H12FN3SF(000) = 472
Mr = 225.29Dx = 1.346 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 75 reflections
a = 9.038 (2) Åθ = 6–20°
b = 10.515 (2) ŵ = 2.48 mm1
c = 11.869 (2) ÅT = 296 K
β = 99.77 (3)°Plate, colourless
V = 1111.6 (4) Å30.55 × 0.30 × 0.10 mm
Z = 4
Kuma KM-4 diffractometer1252 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.084
graphiteθmax = 67.7°, θmin = 5.0°
ω–2θ scansh = −10→10
Absorption correction: for a cylinder mounted on the φ axis (Dwiggins, 1975)k = −12→12
Tmin = 0.435, Tmax = 0.485l = 0→14
3800 measured reflections3 standard reflections every 100 reflections
1942 independent reflections intensity decay: 3.3%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.068Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.217H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.1522P)2] where P = (Fo2 + 2Fc2)/3
1942 reflections(Δ/σ)max = 0.013
138 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.39 e Å3
Experimental. cylinder dimensions used for absorption correction: 0.2 mm radius and a 0.1 mm height
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4980 (4)0.4433 (3)0.2021 (3)0.0493 (8)
C1P0.3908 (4)0.4006 (4)0.3776 (3)0.0506 (9)
C20.8673 (4)0.3455 (4)0.1991 (3)0.0557 (9)
C2P0.3249 (5)0.5171 (4)0.3911 (3)0.0566 (9)
H2P0.33810.58640.34510.068*
C30.9760 (5)0.2575 (6)0.2680 (4)0.0785 (14)
H3A0.93950.23440.33660.094*
H3B1.07150.29890.28760.094*
H3C0.98700.18230.22420.094*
C3P0.2380 (5)0.5252 (4)0.4767 (4)0.0613 (10)
C40.9221 (5)0.4267 (5)0.1128 (4)0.0718 (13)
H4A0.90860.38300.04080.086*
H4B1.02680.44480.13730.086*
H5C0.86650.50490.10460.086*
C4P0.2123 (5)0.4283 (5)0.5460 (4)0.0675 (11)
H4P0.15210.43840.60150.081*
C5P0.2802 (6)0.3136 (5)0.5299 (4)0.0700 (12)
H5P0.26620.24470.57610.084*
C6P0.3682 (5)0.2991 (4)0.4467 (4)0.0639 (11)
H6P0.41240.22090.43700.077*
N10.4913 (4)0.3838 (3)0.3000 (3)0.0564 (8)
H10.55860.32630.31890.068*
N20.6276 (4)0.4233 (3)0.1607 (3)0.0560 (8)
H20.64270.45870.09830.067*
N30.7337 (4)0.3444 (4)0.2220 (3)0.0567 (8)
S10.36293 (11)0.53442 (10)0.12753 (8)0.0578 (4)
F10.1751 (4)0.6403 (3)0.4920 (3)0.0941 (11)
U11U22U33U12U13U23
C10.0477 (18)0.0465 (19)0.0519 (19)0.0021 (16)0.0037 (14)−0.0012 (15)
C1P0.0412 (17)0.061 (2)0.0499 (18)0.0004 (16)0.0070 (14)0.0020 (16)
C20.052 (2)0.057 (2)0.058 (2)0.0001 (18)0.0065 (17)−0.0026 (18)
C2P0.063 (2)0.052 (2)0.055 (2)0.0007 (18)0.0113 (17)0.0036 (17)
C30.062 (3)0.099 (3)0.073 (3)0.027 (3)0.006 (2)0.007 (3)
C3P0.072 (3)0.061 (2)0.0521 (19)0.012 (2)0.0145 (18)−0.0026 (18)
C40.049 (2)0.087 (3)0.078 (3)−0.008 (2)0.0078 (19)0.011 (3)
C4P0.071 (3)0.078 (3)0.058 (2)0.008 (2)0.0247 (19)0.007 (2)
C5P0.075 (3)0.071 (3)0.068 (3)0.001 (2)0.026 (2)0.016 (2)
C6P0.068 (3)0.057 (2)0.067 (2)0.006 (2)0.0116 (19)0.0073 (19)
N10.0545 (18)0.0620 (19)0.0541 (17)0.0156 (16)0.0133 (13)0.0080 (15)
N20.0498 (17)0.0609 (18)0.0572 (18)0.0055 (15)0.0087 (13)0.0070 (15)
N30.0502 (17)0.064 (2)0.0564 (17)0.0092 (15)0.0107 (14)0.0049 (15)
S10.0535 (6)0.0664 (7)0.0528 (6)0.0100 (5)0.0069 (4)0.0064 (4)
F10.139 (3)0.0729 (18)0.0802 (18)0.0358 (19)0.0475 (18)0.0055 (15)
C1—N11.331 (5)C3P—C4P1.354 (6)
C1—N21.361 (5)C3P—F11.362 (5)
C1—S11.681 (4)C4—H4A0.9600
C1P—C6P1.382 (6)C4—H4B0.9600
C1P—C2P1.383 (6)C4—H5C0.9600
C1P—N11.409 (5)C4P—C5P1.381 (7)
C2—N31.282 (5)C4P—H4P0.9300
C2—C41.482 (6)C5P—C6P1.377 (6)
C2—C31.489 (6)C5P—H5P0.9300
C2P—C3P1.389 (6)C6P—H6P0.9300
C2P—H2P0.9300N1—H10.8600
C3—H3A0.9600N2—N31.379 (5)
C3—H3B0.9600N2—H20.8600
C3—H3C0.9600
N1—C1—N2114.4 (3)C2—C4—H4B109.5
N1—C1—S1126.2 (3)H4A—C4—H4B109.5
N2—C1—S1119.4 (3)C2—C4—H5C109.5
C6P—C1P—C2P120.3 (4)H4A—C4—H5C109.5
C6P—C1P—N1117.9 (4)H4B—C4—H5C109.5
C2P—C1P—N1121.6 (4)C3P—C4P—C5P116.6 (4)
N3—C2—C4126.1 (4)C3P—C4P—H4P121.7
N3—C2—C3115.8 (4)C5P—C4P—H4P121.7
C4—C2—C3118.1 (4)C6P—C5P—C4P121.3 (4)
C1P—C2P—C3P116.6 (4)C6P—C5P—H5P119.3
C1P—C2P—H2P121.7C4P—C5P—H5P119.3
C3P—C2P—H2P121.7C5P—C6P—C1P120.1 (4)
C2—C3—H3A109.5C5P—C6P—H6P119.9
C2—C3—H3B109.5C1P—C6P—H6P119.9
H3A—C3—H3B109.5C1—N1—C1P129.9 (3)
C2—C3—H3C109.5C1—N1—H1115.0
H3A—C3—H3C109.5C1P—N1—H1115.0
H3B—C3—H3C109.5C1—N2—N3117.8 (3)
C4P—C3P—F1118.1 (4)C1—N2—H2121.1
C4P—C3P—C2P125.0 (4)N3—N2—H2121.1
F1—C3P—C2P116.9 (4)C2—N3—N2118.6 (4)
C2—C4—H4A109.5
D—H···AD—HH···AD···AD—H···A
N1—H1···N30.862.122.553 (5)111
N2—H2···S1i0.862.673.465 (3)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N30.862.122.553 (5)111
N2—H2⋯S1i0.862.673.465 (3)154

Symmetry code: (i) .

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