Literature DB >> 22220024

Heptane-1,7-diaminium dinitrate.

Charmaine Arderne1.   

Abstract

In the title molecular salt, C(7)H(20)N(2) (2+)·2NO(3) (-), the crystal structure exhibits an unusual back-to-back paired double-stacked packing arrangement culminating in an overall double zigzag pattern of the dications. The nitrate anions form a ring around one pair of double-stacked dications. An intricate three-dimensional N-H⋯O and N-H⋯(O,O) hydrogen-bonding network exists in the crystal structure.

Entities:  

Year:  2011        PMID: 22220024      PMCID: PMC3247406          DOI: 10.1107/S1600536811042917

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structural studies of n-alkyl-diammonium nitrate salts, see: van Blerk & Kruger (2009 ▶). For the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C7H20N2 2+·2NO3 − M = 256.27 Monoclinic, a = 5.3236 (1) Å b = 16.8340 (4) Å c = 14.9845 (3) Å β = 96.500 (1)° V = 1334.24 (5) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 295 K 0.44 × 0.35 × 0.32 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (AX-SCALE; Bruker, 2008 ▶) T min = 0.953, T max = 0.966 16750 measured reflections 2343 independent reflections 1828 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.124 S = 1.06 2343 reflections 157 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART-NT (Bruker, 1999 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811042917/ez2262sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042917/ez2262Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811042917/ez2262Isup3.mol Supplementary material file. DOI: 10.1107/S1600536811042917/ez2262Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H20N22+·2NO3F(000) = 552
Mr = 256.27Dx = 1.276 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 8072 reflections
a = 5.3236 (1) Åθ = 2.4–24.5°
b = 16.8340 (4) ŵ = 0.11 mm1
c = 14.9845 (3) ÅT = 295 K
β = 96.500 (1)°Block, colourless
V = 1334.24 (5) Å30.44 × 0.35 × 0.32 mm
Z = 4
Bruker SMART CCD diffractometer2343 independent reflections
Radiation source: fine-focus sealed tube1828 reflections with I > 2σ(I)
graphiteRint = 0.032
φ and ω scansθmax = 25.0°, θmin = 1.8°
Absorption correction: multi-scan (AX-SCALE; Bruker, 2008)h = −6→6
Tmin = 0.953, Tmax = 0.966k = −19→19
16750 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H-atom parameters constrained
wR(F2) = 0.124w = 1/[σ2(Fo2) + (0.0558P)2 + 0.3767P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2343 reflectionsΔρmax = 0.29 e Å3
157 parametersΔρmin = −0.18 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.027 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2521 (4)0.71038 (12)0.43729 (16)0.0700 (6)
H1A0.19000.66620.39940.084*
H1B0.12820.72130.47840.084*
C20.4951 (4)0.68708 (14)0.48992 (15)0.0703 (6)
H2A0.56710.73310.52230.084*
H2B0.61270.67030.44870.084*
C30.4660 (4)0.62061 (13)0.55650 (14)0.0683 (6)
H3A0.35150.63800.59860.082*
H3B0.38990.57510.52430.082*
C40.7127 (4)0.59522 (14)0.60854 (15)0.0724 (6)
H4A0.81820.57100.56730.087*
H4B0.80000.64200.63390.087*
C50.6812 (4)0.53735 (13)0.68327 (14)0.0670 (5)
H5A0.59060.49110.65800.080*
H5B0.57810.56200.72490.080*
C60.9287 (4)0.50997 (13)0.73523 (13)0.0617 (5)
H6A1.02230.47830.69620.074*
H6B1.03060.55600.75430.074*
C70.8826 (3)0.46172 (11)0.81595 (13)0.0571 (5)
H7A0.78540.49310.85410.068*
H7B0.78310.41530.79650.068*
N10.2774 (3)0.78115 (9)0.38028 (11)0.0612 (4)
H1C0.31760.82320.41500.092*
H1D0.13150.79010.34660.092*
H1E0.39830.77270.34490.092*
N21.1202 (3)0.43572 (9)0.86872 (10)0.0563 (4)
H2C1.19560.39940.83780.084*
H2D1.08550.41480.92050.084*
H2E1.22240.47730.87960.084*
N30.2584 (3)0.77064 (11)0.75577 (11)0.0643 (5)
N40.3365 (3)0.60428 (9)0.97456 (10)0.0524 (4)
O10.2441 (3)0.70920 (9)0.80187 (11)0.0828 (5)
O20.0960 (4)0.82199 (13)0.75256 (13)0.1094 (7)
O30.4470 (3)0.78063 (11)0.71661 (13)0.0983 (6)
O40.1024 (2)0.59148 (8)0.96594 (8)0.0579 (4)
O50.4312 (3)0.65102 (10)1.03157 (11)0.0859 (5)
O60.4699 (3)0.56836 (8)0.92489 (11)0.0731 (4)
U11U22U33U12U13U23
C10.0538 (11)0.0625 (12)0.0923 (15)−0.0014 (9)0.0016 (10)0.0079 (11)
C20.0556 (11)0.0777 (14)0.0755 (13)−0.0033 (10)−0.0012 (10)0.0081 (11)
C30.0584 (12)0.0721 (13)0.0727 (13)−0.0007 (10)−0.0003 (10)0.0041 (11)
C40.0593 (12)0.0834 (15)0.0729 (13)−0.0023 (11)0.0004 (10)0.0120 (11)
C50.0561 (11)0.0755 (13)0.0683 (12)−0.0021 (10)0.0020 (9)0.0050 (10)
C60.0528 (11)0.0696 (12)0.0624 (11)−0.0009 (9)0.0045 (9)0.0033 (10)
C70.0504 (10)0.0580 (11)0.0631 (11)0.0000 (8)0.0078 (8)−0.0033 (9)
N10.0513 (9)0.0562 (9)0.0743 (11)0.0003 (7)0.0001 (8)−0.0044 (8)
N20.0582 (9)0.0552 (9)0.0548 (9)0.0062 (7)0.0033 (7)−0.0041 (7)
N30.0607 (10)0.0703 (11)0.0601 (10)−0.0032 (9)−0.0014 (8)0.0114 (8)
N40.0455 (9)0.0497 (9)0.0609 (9)0.0030 (7)0.0016 (7)0.0092 (7)
O10.0805 (11)0.0728 (10)0.0962 (11)−0.0081 (8)0.0145 (8)0.0310 (9)
O20.0942 (13)0.1239 (15)0.1122 (14)0.0452 (12)0.0216 (11)0.0440 (12)
O30.0797 (11)0.1003 (13)0.1192 (14)−0.0011 (9)0.0293 (10)0.0406 (11)
O40.0425 (7)0.0639 (8)0.0674 (8)0.0010 (6)0.0061 (6)0.0046 (6)
O50.0768 (11)0.0803 (11)0.0948 (11)−0.0076 (8)−0.0155 (9)−0.0181 (9)
O60.0574 (8)0.0696 (9)0.0967 (11)0.0094 (7)0.0286 (8)0.0016 (8)
C1—N11.481 (3)C6—H6A0.9700
C1—C21.489 (3)C6—H6B0.9700
C1—H1A0.9700C7—N21.480 (2)
C1—H1B0.9700C7—H7A0.9700
C2—C31.519 (3)C7—H7B0.9700
C2—H2A0.9700N1—H1C0.8900
C2—H2B0.9700N1—H1D0.8900
C3—C41.511 (3)N1—H1E0.8900
C3—H3A0.9700N2—H2C0.8900
C3—H3B0.9700N2—H2D0.8900
C4—C51.508 (3)N2—H2E0.8900
C4—H4A0.9700N3—O21.220 (2)
C4—H4B0.9700N3—O31.230 (2)
C5—C61.524 (3)N3—O11.251 (2)
C5—H5A0.9700N4—O51.227 (2)
C5—H5B0.9700N4—O61.2424 (19)
C6—C71.500 (3)N4—O41.2570 (18)
N1—C1—C2112.78 (17)C7—C6—C5111.39 (16)
N1—C1—H1A109.0C7—C6—H6A109.4
C2—C1—H1A109.0C5—C6—H6A109.4
N1—C1—H1B109.0C7—C6—H6B109.4
C2—C1—H1B109.0C5—C6—H6B109.4
H1A—C1—H1B107.8H6A—C6—H6B108.0
C1—C2—C3113.25 (18)N2—C7—C6112.51 (15)
C1—C2—H2A108.9N2—C7—H7A109.1
C3—C2—H2A108.9C6—C7—H7A109.1
C1—C2—H2B108.9N2—C7—H7B109.1
C3—C2—H2B108.9C6—C7—H7B109.1
H2A—C2—H2B107.7H7A—C7—H7B107.8
C4—C3—C2113.58 (17)C1—N1—H1C109.5
C4—C3—H3A108.9C1—N1—H1D109.5
C2—C3—H3A108.9H1C—N1—H1D109.5
C4—C3—H3B108.9C1—N1—H1E109.5
C2—C3—H3B108.9H1C—N1—H1E109.5
H3A—C3—H3B107.7H1D—N1—H1E109.5
C5—C4—C3113.76 (17)C7—N2—H2C109.5
C5—C4—H4A108.8C7—N2—H2D109.5
C3—C4—H4A108.8H2C—N2—H2D109.5
C5—C4—H4B108.8C7—N2—H2E109.5
C3—C4—H4B108.8H2C—N2—H2E109.5
H4A—C4—H4B107.7H2D—N2—H2E109.5
C4—C5—C6114.37 (17)O2—N3—O3119.83 (18)
C4—C5—H5A108.7O2—N3—O1121.37 (19)
C6—C5—H5A108.7O3—N3—O1118.72 (18)
C4—C5—H5B108.7O5—N4—O6120.76 (16)
C6—C5—H5B108.7O5—N4—O4120.40 (16)
H5A—C5—H5B107.6O6—N4—O4118.84 (16)
N1—C1—C2—C3173.40 (19)C3—C4—C5—C6178.89 (19)
C1—C2—C3—C4178.6 (2)C4—C5—C6—C7172.16 (18)
C2—C3—C4—C5172.1 (2)C5—C6—C7—N2−178.84 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1C···O4i0.892.162.956 (2)149
N1—H1C···O6ii0.892.623.129 (2)118
N1—H1D···O1ii0.892.092.951 (2)161
N1—H1D···O3ii0.892.403.035 (2)129
N1—H1E···O1i0.892.042.871 (2)155
N1—H1E···O2i0.892.433.208 (3)147
N2—H2C···O2iii0.892.263.142 (2)172
N2—H2C···O3iii0.892.262.911 (2)130
N2—H2D···O4iv0.892.072.901 (2)155
N2—H2E···O4v0.892.443.0064 (19)122
N2—H2E···O6v0.892.082.967 (2)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1C⋯O4i0.892.162.956 (2)149
N1—H1C⋯O6ii0.892.623.129 (2)118
N1—H1D⋯O1ii0.892.092.951 (2)161
N1—H1D⋯O3ii0.892.403.035 (2)129
N1—H1E⋯O1i0.892.042.871 (2)155
N1—H1E⋯O2i0.892.433.208 (3)147
N2—H2C⋯O2iii0.892.263.142 (2)172
N2—H2C⋯O3iii0.892.262.911 (2)130
N2—H2D⋯O4iv0.892.072.901 (2)155
N2—H2E⋯O4v0.892.443.0064 (19)122
N2—H2E⋯O6v0.892.082.967 (2)171

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  4 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Hexane-1,6-diammonium dinitrate.

Authors:  Charmaine van Blerk; Gert J Kruger
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-08

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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