| Literature DB >> 21583832 |
Charmaine van Blerk1, Gert J Kruger.
Abstract
The hexane-1,6-diammonium cation of the title compound, C(6)H(18)N(2) (2+)·2NO(3) (-), lies across a crystallographic inversion centre and shows significant deviation from planarity in the hydro-carbon chain. This is evident from the torsion angle of -64.0°(2) along the N-C-C-C bond and thse torsion angle of -67.1°(2) along the C-C-C-C bonds. An intricate three-dimensional hydrogen-bonding network exists in the crystal structure, with each H atom on the ammonium group exhibiting bifurcated inter-actions to the nitrate anion. Complex hydrogen-bonded ring and chain motifs are also evident, in particular a 26-membered ring with graph-set notation R(4) (4)(26) is observed.Entities:
Year: 2009 PMID: 21583832 PMCID: PMC2977696 DOI: 10.1107/S1600536809012963
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H18N22+·2NO3− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 5933 reflections |
| θ = 2.5–25.2° | |
| µ = 0.12 mm−1 | |
| β = 92.840 (1)° | Rectangular, colourless |
| 0.46 × 0.20 × 0.16 mm | |
| Bruker SMART CCD diffractometer | 1718 independent reflections |
| Radiation source: fine-focus sealed tube | 1107 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.0°, θmin = 3.1° |
| Absorption correction: multi-scan (AX-Scale; Bruker, 2008) | |
| 14665 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1718 reflections | (Δ/σ)max < 0.001 |
| 74 parameters | Δρmax = 0.37 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.7036 (3) | 0.01369 (13) | 0.31554 (19) | 0.0599 (4) | |
| H1A | 0.5614 | −0.0134 | 0.3351 | 0.072* | |
| H1B | 0.8020 | −0.0243 | 0.3934 | 0.072* | |
| C2 | 0.7584 (3) | −0.01708 (14) | 0.1427 (2) | 0.0593 (4) | |
| H2A | 0.7644 | −0.0999 | 0.1351 | 0.071* | |
| H2B | 0.9000 | 0.0117 | 0.1251 | 0.071* | |
| C3 | 0.6095 (2) | 0.02648 (14) | 0.00229 (18) | 0.0540 (4) | |
| H3A | 0.5955 | 0.1088 | 0.0126 | 0.065* | |
| H3B | 0.6737 | 0.0110 | −0.1016 | 0.065* | |
| N1 | 0.7138 (2) | 0.13945 (11) | 0.34353 (15) | 0.0544 (4) | |
| H1C | 0.6044 | 0.1730 | 0.2893 | 0.082* | |
| H1D | 0.8350 | 0.1667 | 0.3072 | 0.082* | |
| H1E | 0.7082 | 0.1539 | 0.4508 | 0.082* | |
| N2 | 0.2075 (2) | 0.23209 (11) | 0.22415 (16) | 0.0510 (3) | |
| O1 | 0.03639 (19) | 0.26482 (12) | 0.15889 (16) | 0.0710 (4) | |
| O2 | 0.2102 (2) | 0.15918 (11) | 0.33405 (15) | 0.0732 (4) | |
| O3 | 0.3767 (2) | 0.27276 (12) | 0.17480 (16) | 0.0714 (4) |
| C1 | 0.0791 (11) | 0.0552 (9) | 0.0448 (8) | 0.0006 (8) | −0.0042 (7) | 0.0031 (6) |
| C2 | 0.0622 (9) | 0.0591 (9) | 0.0559 (9) | 0.0067 (7) | −0.0052 (7) | −0.0109 (7) |
| C3 | 0.0632 (9) | 0.0583 (9) | 0.0407 (7) | −0.0024 (7) | 0.0046 (6) | −0.0062 (6) |
| N1 | 0.0544 (8) | 0.0610 (8) | 0.0479 (7) | −0.0035 (6) | 0.0033 (6) | −0.0087 (5) |
| N2 | 0.0584 (8) | 0.0501 (7) | 0.0451 (7) | 0.0059 (6) | 0.0070 (6) | −0.0002 (5) |
| O1 | 0.0567 (7) | 0.0808 (9) | 0.0755 (9) | 0.0130 (6) | 0.0018 (6) | 0.0188 (6) |
| O2 | 0.0782 (9) | 0.0798 (8) | 0.0615 (7) | 0.0012 (7) | 0.0045 (6) | 0.0279 (6) |
| O3 | 0.0576 (8) | 0.0846 (9) | 0.0731 (8) | −0.0041 (6) | 0.0131 (6) | 0.0188 (6) |
| C1—N1 | 1.487 (2) | C3—H3A | 0.9700 |
| C1—C2 | 1.505 (2) | C3—H3B | 0.9700 |
| C1—H1A | 0.9700 | N1—H1C | 0.8900 |
| C1—H1B | 0.9700 | N1—H1D | 0.8900 |
| C2—C3 | 1.527 (2) | N1—H1E | 0.8900 |
| C2—H2A | 0.9700 | N2—O2 | 1.2330 (16) |
| C2—H2B | 0.9700 | N2—O1 | 1.2369 (17) |
| C3—C3i | 1.510 (3) | N2—O3 | 1.2504 (17) |
| N1—C1—C2 | 111.60 (13) | C2—C3—H3A | 108.7 |
| N1—C1—H1A | 109.3 | C3i—C3—H3B | 108.7 |
| C2—C1—H1A | 109.3 | C2—C3—H3B | 108.7 |
| N1—C1—H1B | 109.3 | H3A—C3—H3B | 107.6 |
| C2—C1—H1B | 109.3 | C1—N1—H1C | 109.5 |
| H1A—C1—H1B | 108.0 | C1—N1—H1D | 109.5 |
| C1—C2—C3 | 117.17 (14) | H1C—N1—H1D | 109.5 |
| C1—C2—H2A | 108.0 | C1—N1—H1E | 109.5 |
| C3—C2—H2A | 108.0 | H1C—N1—H1E | 109.5 |
| C1—C2—H2B | 108.0 | H1D—N1—H1E | 109.5 |
| C3—C2—H2B | 108.0 | O2—N2—O1 | 120.27 (14) |
| H2A—C2—H2B | 107.2 | O2—N2—O3 | 120.85 (14) |
| C3i—C3—C2 | 114.07 (17) | O1—N2—O3 | 118.86 (13) |
| C3i—C3—H3A | 108.7 | ||
| N1—C1—C2—C3 | −64.0 (2) | C1—C2—C3—C3i | −67.1 (2) |
| H··· | ||||
| N1—H1C···O2 | 0.89 | 2.53 | 3.1760 (19) | 130 |
| N1—H1C···O3 | 0.89 | 2.04 | 2.9184 (19) | 171 |
| N1—H1D···O1ii | 0.89 | 2.13 | 2.9692 (18) | 158 |
| N1—H1D···O2ii | 0.89 | 2.36 | 3.1374 (19) | 146 |
| N1—H1E···O1iii | 0.89 | 2.26 | 3.0561 (18) | 149 |
| N1—H1E···O3iii | 0.89 | 2.23 | 3.0110 (18) | 146 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.89 | 2.53 | 3.1760 (19) | 130 |
| N1—H1 | 0.89 | 2.04 | 2.9184 (19) | 171 |
| N1—H1 | 0.89 | 2.13 | 2.9692 (18) | 158 |
| N1—H1 | 0.89 | 2.36 | 3.1374 (19) | 146 |
| N1—H1 | 0.89 | 2.26 | 3.0561 (18) | 149 |
| N1—H1 | 0.89 | 2.23 | 3.0110 (18) | 146 |
Symmetry codes: (ii) ; (iii) .