Literature DB >> 21583832

Hexane-1,6-diammonium dinitrate.

Charmaine van Blerk1, Gert J Kruger.   

Abstract

The hexane-1,6-diammonium cation of the title compound, C(6)H(18)N(2) (2+)·2NO(3) (-), lies across a crystallographic inversion centre and shows significant deviation from planarity in the hydro-carbon chain. This is evident from the torsion angle of -64.0°(2) along the N-C-C-C bond and thse torsion angle of -67.1°(2) along the C-C-C-C bonds. An intricate three-dimensional hydrogen-bonding network exists in the crystal structure, with each H atom on the ammonium group exhibiting bifurcated inter-actions to the nitrate anion. Complex hydrogen-bonded ring and chain motifs are also evident, in particular a 26-membered ring with graph-set notation R(4) (4)(26) is observed.

Entities:  

Year:  2009        PMID: 21583832      PMCID: PMC2977696          DOI: 10.1107/S1600536809012963

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structural studies of hexane-1,6-diammonium salts, see: van Blerk & Kruger (2008 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C6H18N2 2+·2NO3 − M = 242.24 Monoclinic, a = 6.2947 (1) Å b = 11.6783 (3) Å c = 8.1211 (2) Å β = 92.840 (1)° V = 596.26 (2) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 295 K 0.46 × 0.20 × 0.16 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (AX-Scale; Bruker, 2008 ▶) T min = 0.948, T max = 0.981 14665 measured reflections 1718 independent reflections 1107 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.147 S = 1.02 1718 reflections 74 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.19 e Å−3 Data collection: SMART-NT (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809012963/fj2206sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809012963/fj2206Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H18N22+·2NO3F(000) = 260
Mr = 242.24Dx = 1.349 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5933 reflections
a = 6.2947 (1) Åθ = 2.5–25.2°
b = 11.6783 (3) ŵ = 0.12 mm1
c = 8.1211 (2) ÅT = 295 K
β = 92.840 (1)°Rectangular, colourless
V = 596.26 (2) Å30.46 × 0.20 × 0.16 mm
Z = 2
Bruker SMART CCD diffractometer1718 independent reflections
Radiation source: fine-focus sealed tube1107 reflections with I > 2σ(I)
graphiteRint = 0.026
φ and ω scansθmax = 30.0°, θmin = 3.1°
Absorption correction: multi-scan (AX-Scale; Bruker, 2008)h = −8→8
Tmin = 0.948, Tmax = 0.981k = −16→16
14665 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.147H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0674P)2 + 0.1254P] where P = (Fo2 + 2Fc2)/3
1718 reflections(Δ/σ)max < 0.001
74 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7036 (3)0.01369 (13)0.31554 (19)0.0599 (4)
H1A0.5614−0.01340.33510.072*
H1B0.8020−0.02430.39340.072*
C20.7584 (3)−0.01708 (14)0.1427 (2)0.0593 (4)
H2A0.7644−0.09990.13510.071*
H2B0.90000.01170.12510.071*
C30.6095 (2)0.02648 (14)0.00229 (18)0.0540 (4)
H3A0.59550.10880.01260.065*
H3B0.67370.0110−0.10160.065*
N10.7138 (2)0.13945 (11)0.34353 (15)0.0544 (4)
H1C0.60440.17300.28930.082*
H1D0.83500.16670.30720.082*
H1E0.70820.15390.45080.082*
N20.2075 (2)0.23209 (11)0.22415 (16)0.0510 (3)
O10.03639 (19)0.26482 (12)0.15889 (16)0.0710 (4)
O20.2102 (2)0.15918 (11)0.33405 (15)0.0732 (4)
O30.3767 (2)0.27276 (12)0.17480 (16)0.0714 (4)
U11U22U33U12U13U23
C10.0791 (11)0.0552 (9)0.0448 (8)0.0006 (8)−0.0042 (7)0.0031 (6)
C20.0622 (9)0.0591 (9)0.0559 (9)0.0067 (7)−0.0052 (7)−0.0109 (7)
C30.0632 (9)0.0583 (9)0.0407 (7)−0.0024 (7)0.0046 (6)−0.0062 (6)
N10.0544 (8)0.0610 (8)0.0479 (7)−0.0035 (6)0.0033 (6)−0.0087 (5)
N20.0584 (8)0.0501 (7)0.0451 (7)0.0059 (6)0.0070 (6)−0.0002 (5)
O10.0567 (7)0.0808 (9)0.0755 (9)0.0130 (6)0.0018 (6)0.0188 (6)
O20.0782 (9)0.0798 (8)0.0615 (7)0.0012 (7)0.0045 (6)0.0279 (6)
O30.0576 (8)0.0846 (9)0.0731 (8)−0.0041 (6)0.0131 (6)0.0188 (6)
C1—N11.487 (2)C3—H3A0.9700
C1—C21.505 (2)C3—H3B0.9700
C1—H1A0.9700N1—H1C0.8900
C1—H1B0.9700N1—H1D0.8900
C2—C31.527 (2)N1—H1E0.8900
C2—H2A0.9700N2—O21.2330 (16)
C2—H2B0.9700N2—O11.2369 (17)
C3—C3i1.510 (3)N2—O31.2504 (17)
N1—C1—C2111.60 (13)C2—C3—H3A108.7
N1—C1—H1A109.3C3i—C3—H3B108.7
C2—C1—H1A109.3C2—C3—H3B108.7
N1—C1—H1B109.3H3A—C3—H3B107.6
C2—C1—H1B109.3C1—N1—H1C109.5
H1A—C1—H1B108.0C1—N1—H1D109.5
C1—C2—C3117.17 (14)H1C—N1—H1D109.5
C1—C2—H2A108.0C1—N1—H1E109.5
C3—C2—H2A108.0H1C—N1—H1E109.5
C1—C2—H2B108.0H1D—N1—H1E109.5
C3—C2—H2B108.0O2—N2—O1120.27 (14)
H2A—C2—H2B107.2O2—N2—O3120.85 (14)
C3i—C3—C2114.07 (17)O1—N2—O3118.86 (13)
C3i—C3—H3A108.7
N1—C1—C2—C3−64.0 (2)C1—C2—C3—C3i−67.1 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1C···O20.892.533.1760 (19)130
N1—H1C···O30.892.042.9184 (19)171
N1—H1D···O1ii0.892.132.9692 (18)158
N1—H1D···O2ii0.892.363.1374 (19)146
N1—H1E···O1iii0.892.263.0561 (18)149
N1—H1E···O3iii0.892.233.0110 (18)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1C⋯O20.892.533.1760 (19)130
N1—H1C⋯O30.892.042.9184 (19)171
N1—H1D⋯O1ii0.892.132.9692 (18)158
N1—H1D⋯O2ii0.892.363.1374 (19)146
N1—H1E⋯O1iii0.892.263.0561 (18)149
N1—H1E⋯O3iii0.892.233.0110 (18)146

Symmetry codes: (ii) ; (iii) .

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