Literature DB >> 22220022

(E)-2-(2-Methyl-cyclo-hexyl-idene)hydrazinecarbothio-amide.

Justin W Hicks, Alan J Lough, Alan A Wilson, Neil Vasdev.   

Abstract

In the crystal of the title compound, C(8)H(15)N(3)S, mol-ecules are linked by N-H⋯S hydrogen bonds, forming chains along [1[Formula: see text]0]. An intra-molecular N-H⋯N hydrogen bond is also present.

Entities:  

Year:  2011        PMID: 22220022      PMCID: PMC3247404          DOI: 10.1107/S1600536811042486

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound, C8H15N3S, is a key inter­mediate for the preparation of hydrazinyl-5-aryl­thia­zole-based monoamine oxidase B (MAO-B) inhibitors. For the synthesis of hydrazinyl-5-aryl­thia­zoles and their MAO-B inhibitory activity, see: Chimenti et al. (2008 ▶, 2010 ▶). For background on our inter­est in radiolabelled mol­ecules targeting MAO-B, see: Vasdev et al. (2011a ▶,b ▶). For the preparation of 18F-labelled potassium cryptand fluoride, see: Vasdev et al. (2009 ▶).

Experimental

Crystal data

C8H15N3S M = 185.29 Triclinic, a = 6.0261 (5) Å b = 8.0655 (4) Å c = 10.9129 (9) Å α = 83.904 (5)° β = 89.386 (4)° γ = 68.416 (4)° V = 490.19 (6) Å3 Z = 2 Mo Kα radiation μ = 0.28 mm−1 T = 150 K 0.20 × 0.14 × 0.04 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SORTAV; Blessing, 1995 ▶) T min = 0.710, T max = 1.060 5938 measured reflections 2184 independent reflections 1698 reflections with I > 2σ(I) R int = 0.077

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.122 S = 1.05 2184 reflections 122 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.25 e Å−3 Data collection: COLLECT (Nonius, 2002 ▶); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997 ▶); data reduction: DENZO-SMN; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXTL (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811042486/pv2460sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042486/pv2460Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811042486/pv2460Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H15N3SZ = 2
Mr = 185.29F(000) = 200
Triclinic, P1Dx = 1.255 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.0261 (5) ÅCell parameters from 5938 reflections
b = 8.0655 (4) Åθ = 2.6–27.5°
c = 10.9129 (9) ŵ = 0.28 mm1
α = 83.904 (5)°T = 150 K
β = 89.386 (4)°Plate, colourless
γ = 68.416 (4)°0.20 × 0.14 × 0.04 mm
V = 490.19 (6) Å3
Nonius KappaCCD diffractometer2184 independent reflections
Radiation source: fine-focus sealed tube1698 reflections with I > 2σ(I)
graphiteRint = 0.077
Detector resolution: 9 pixels mm-1θmax = 27.6°, θmin = 2.7°
φ scans and ω scans with κ offsetsh = −7→7
Absorption correction: multi-scan (SORTAV; Blessing, 1995)k = −10→10
Tmin = 0.710, Tmax = 1.060l = −13→14
5938 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0454P)2 + 0.1232P] where P = (Fo2 + 2Fc2)/3
2184 reflections(Δ/σ)max < 0.001
122 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.25 e Å3
Experimental. 1H NMR (CDCl3, 400 MHz) δ p.p.m. 8.83 (br s, 1H), 7.25 (br s, 1H), 6.48 (br s, 1H), 2.66 (m, 1H), 2.29 - 2.40 (m, 1H), 1.84 - 2.00 (m, 3H), 1.75 - 1.83 (m, 1H), 1.41 - 1.66 (m, 2H), 1.23 - 1.36 (m, 1H), 1.10 (d, J= 6.6 Hz, 3H). HRMS (ESI) m/z calcd for C8H16N3S, 186.1059; found 186.1064 (M++H).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.17188 (9)0.22748 (6)0.01937 (5)0.03606 (19)
N10.5032 (3)0.4731 (2)0.19337 (16)0.0335 (4)
H1N0.185 (5)0.522 (3)0.104 (2)0.051 (7)*
N20.3306 (3)0.4439 (2)0.12560 (17)0.0336 (4)
N30.6066 (3)0.1654 (2)0.10779 (19)0.0428 (5)
H2N0.708 (4)0.195 (3)0.137 (2)0.047 (7)*
H3N0.649 (4)0.061 (3)0.078 (2)0.039 (6)*
C10.4559 (4)0.6253 (2)0.23460 (19)0.0334 (5)
C20.6541 (4)0.6475 (3)0.3062 (2)0.0370 (5)
H2A0.70740.73440.25370.044*
C30.5603 (4)0.7327 (3)0.4246 (2)0.0437 (5)
H3A0.51900.64580.48220.052*
H3B0.68830.75930.46460.052*
C40.3419 (4)0.9048 (3)0.4007 (2)0.0476 (6)
H4A0.28490.95240.47990.057*
H4B0.38530.99590.34870.057*
C50.1440 (4)0.8698 (3)0.3362 (2)0.0456 (6)
H5A0.00660.98420.31770.055*
H5B0.08990.78800.39190.055*
C60.2269 (4)0.7867 (3)0.2168 (2)0.0407 (5)
H6A0.10090.75090.18370.049*
H6B0.25040.87780.15530.049*
C70.8715 (4)0.4756 (3)0.3314 (2)0.0450 (6)
H7A0.93050.42860.25320.067*
H7B0.82750.38660.38370.067*
H7C0.99680.50040.37350.067*
C80.3858 (3)0.2802 (2)0.08743 (18)0.0311 (4)
U11U22U33U12U13U23
S10.0358 (3)0.0288 (3)0.0448 (4)−0.0112 (2)−0.0042 (2)−0.0115 (2)
N10.0343 (9)0.0373 (9)0.0338 (10)−0.0170 (7)0.0000 (8)−0.0105 (7)
N20.0311 (9)0.0303 (8)0.0405 (11)−0.0104 (7)−0.0030 (8)−0.0120 (7)
N30.0352 (10)0.0337 (9)0.0588 (14)−0.0073 (8)−0.0075 (9)−0.0202 (9)
C10.0381 (11)0.0348 (10)0.0306 (11)−0.0162 (9)0.0041 (9)−0.0089 (8)
C20.0385 (12)0.0423 (11)0.0371 (12)−0.0210 (9)0.0026 (10)−0.0116 (9)
C30.0464 (13)0.0503 (12)0.0424 (14)−0.0240 (10)0.0000 (11)−0.0173 (10)
C40.0531 (14)0.0452 (12)0.0505 (15)−0.0199 (11)0.0035 (12)−0.0254 (11)
C50.0446 (13)0.0413 (11)0.0513 (15)−0.0126 (10)0.0001 (11)−0.0190 (10)
C60.0478 (13)0.0330 (10)0.0422 (13)−0.0137 (9)−0.0056 (10)−0.0116 (9)
C70.0378 (12)0.0528 (13)0.0481 (14)−0.0185 (10)0.0013 (10)−0.0155 (11)
C80.0344 (11)0.0291 (9)0.0309 (11)−0.0115 (8)0.0031 (9)−0.0091 (8)
S1—C81.698 (2)C3—H3A0.9900
N1—C11.284 (2)C3—H3B0.9900
N1—N21.385 (2)C4—C51.518 (3)
N2—C81.348 (2)C4—H4A0.9900
N2—H1N0.88 (3)C4—H4B0.9900
N3—C81.317 (3)C5—C61.523 (3)
N3—H2N0.81 (3)C5—H5A0.9900
N3—H3N0.88 (2)C5—H5B0.9900
C1—C61.506 (3)C6—H6A0.9900
C1—C21.508 (3)C6—H6B0.9900
C2—C71.518 (3)C7—H7A0.9800
C2—C31.532 (3)C7—H7B0.9800
C2—H2A1.0000C7—H7C0.9800
C3—C41.521 (3)
C1—N1—N2119.69 (16)C5—C4—H4B109.6
C8—N2—N1117.61 (16)C3—C4—H4B109.6
C8—N2—H1N115.7 (16)H4A—C4—H4B108.1
N1—N2—H1N126.7 (16)C4—C5—C6111.68 (19)
C8—N3—H2N121.1 (17)C4—C5—H5A109.3
C8—N3—H3N118.9 (15)C6—C5—H5A109.3
H2N—N3—H3N119 (2)C4—C5—H5B109.3
N1—C1—C6127.45 (18)C6—C5—H5B109.3
N1—C1—C2116.52 (17)H5A—C5—H5B107.9
C6—C1—C2116.01 (16)C1—C6—C5112.49 (18)
C1—C2—C7113.51 (16)C1—C6—H6A109.1
C1—C2—C3110.67 (17)C5—C6—H6A109.1
C7—C2—C3112.02 (19)C1—C6—H6B109.1
C1—C2—H2A106.7C5—C6—H6B109.1
C7—C2—H2A106.7H6A—C6—H6B107.8
C3—C2—H2A106.7C2—C7—H7A109.5
C4—C3—C2112.57 (19)C2—C7—H7B109.5
C4—C3—H3A109.1H7A—C7—H7B109.5
C2—C3—H3A109.1C2—C7—H7C109.5
C4—C3—H3B109.1H7A—C7—H7C109.5
C2—C3—H3B109.1H7B—C7—H7C109.5
H3A—C3—H3B107.8N3—C8—N2117.45 (18)
C5—C4—C3110.46 (16)N3—C8—S1122.61 (15)
C5—C4—H4A109.6N2—C8—S1119.92 (15)
C3—C4—H4A109.6
D—H···AD—HH···AD···AD—H···A
N2—H1N···S1i0.88 (3)2.61 (3)3.4645 (19)162 (2)
N3—H3N···S1ii0.88 (2)2.52 (2)3.3954 (19)170.9 (19)
N3—H2N···N10.81 (3)2.28 (2)2.601 (2)104.6 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N⋯S1i0.88 (3)2.61 (3)3.4645 (19)162 (2)
N3—H3N⋯S1ii0.88 (2)2.52 (2)3.3954 (19)170.9 (19)
N3—H2N⋯N10.81 (3)2.28 (2)2.601 (2)104.6 (19)

Symmetry codes: (i) ; (ii) .

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