| Literature DB >> 22220022 |
Justin W Hicks, Alan J Lough, Alan A Wilson, Neil Vasdev.
Abstract
In the crystal of the title compound, C(8)H(15)N(3)S, mol-ecules are linked by N-H⋯S hydrogen bonds, forming chains along [1[Formula: see text]0]. An intra-molecular N-H⋯N hydrogen bond is also present.Entities:
Year: 2011 PMID: 22220022 PMCID: PMC3247404 DOI: 10.1107/S1600536811042486
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H15N3S | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 5938 reflections | |
| θ = 2.6–27.5° | |
| µ = 0.28 mm−1 | |
| α = 83.904 (5)° | |
| β = 89.386 (4)° | Plate, colourless |
| γ = 68.416 (4)° | 0.20 × 0.14 × 0.04 mm |
| Nonius KappaCCD diffractometer | 2184 independent reflections |
| Radiation source: fine-focus sealed tube | 1698 reflections with |
| graphite | |
| Detector resolution: 9 pixels mm-1 | θmax = 27.6°, θmin = 2.7° |
| φ scans and ω scans with κ offsets | |
| Absorption correction: multi-scan ( | |
| 5938 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2184 reflections | (Δ/σ)max < 0.001 |
| 122 parameters | Δρmax = 0.26 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
| Experimental. 1H NMR
(CDCl3, 400 MHz) δ p.p.m. 8.83 (br s, 1H), 7.25 (br s, 1H), 6.48 (br s,
1H), 2.66 (m, 1H), 2.29 - 2.40 (m, 1H), 1.84 - 2.00 (m, 3H), 1.75 - 1.83 (m,
1H), 1.41 - 1.66 (m, 2H), 1.23 - 1.36 (m, 1H), 1.10 (d, |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.17188 (9) | 0.22748 (6) | 0.01937 (5) | 0.03606 (19) | |
| N1 | 0.5032 (3) | 0.4731 (2) | 0.19337 (16) | 0.0335 (4) | |
| H1N | 0.185 (5) | 0.522 (3) | 0.104 (2) | 0.051 (7)* | |
| N2 | 0.3306 (3) | 0.4439 (2) | 0.12560 (17) | 0.0336 (4) | |
| N3 | 0.6066 (3) | 0.1654 (2) | 0.10779 (19) | 0.0428 (5) | |
| H2N | 0.708 (4) | 0.195 (3) | 0.137 (2) | 0.047 (7)* | |
| H3N | 0.649 (4) | 0.061 (3) | 0.078 (2) | 0.039 (6)* | |
| C1 | 0.4559 (4) | 0.6253 (2) | 0.23460 (19) | 0.0334 (5) | |
| C2 | 0.6541 (4) | 0.6475 (3) | 0.3062 (2) | 0.0370 (5) | |
| H2A | 0.7074 | 0.7344 | 0.2537 | 0.044* | |
| C3 | 0.5603 (4) | 0.7327 (3) | 0.4246 (2) | 0.0437 (5) | |
| H3A | 0.5190 | 0.6458 | 0.4822 | 0.052* | |
| H3B | 0.6883 | 0.7593 | 0.4646 | 0.052* | |
| C4 | 0.3419 (4) | 0.9048 (3) | 0.4007 (2) | 0.0476 (6) | |
| H4A | 0.2849 | 0.9524 | 0.4799 | 0.057* | |
| H4B | 0.3853 | 0.9959 | 0.3487 | 0.057* | |
| C5 | 0.1440 (4) | 0.8698 (3) | 0.3362 (2) | 0.0456 (6) | |
| H5A | 0.0066 | 0.9842 | 0.3177 | 0.055* | |
| H5B | 0.0899 | 0.7880 | 0.3919 | 0.055* | |
| C6 | 0.2269 (4) | 0.7867 (3) | 0.2168 (2) | 0.0407 (5) | |
| H6A | 0.1009 | 0.7509 | 0.1837 | 0.049* | |
| H6B | 0.2504 | 0.8778 | 0.1553 | 0.049* | |
| C7 | 0.8715 (4) | 0.4756 (3) | 0.3314 (2) | 0.0450 (6) | |
| H7A | 0.9305 | 0.4286 | 0.2532 | 0.067* | |
| H7B | 0.8275 | 0.3866 | 0.3837 | 0.067* | |
| H7C | 0.9968 | 0.5004 | 0.3735 | 0.067* | |
| C8 | 0.3858 (3) | 0.2802 (2) | 0.08743 (18) | 0.0311 (4) |
| S1 | 0.0358 (3) | 0.0288 (3) | 0.0448 (4) | −0.0112 (2) | −0.0042 (2) | −0.0115 (2) |
| N1 | 0.0343 (9) | 0.0373 (9) | 0.0338 (10) | −0.0170 (7) | 0.0000 (8) | −0.0105 (7) |
| N2 | 0.0311 (9) | 0.0303 (8) | 0.0405 (11) | −0.0104 (7) | −0.0030 (8) | −0.0120 (7) |
| N3 | 0.0352 (10) | 0.0337 (9) | 0.0588 (14) | −0.0073 (8) | −0.0075 (9) | −0.0202 (9) |
| C1 | 0.0381 (11) | 0.0348 (10) | 0.0306 (11) | −0.0162 (9) | 0.0041 (9) | −0.0089 (8) |
| C2 | 0.0385 (12) | 0.0423 (11) | 0.0371 (12) | −0.0210 (9) | 0.0026 (10) | −0.0116 (9) |
| C3 | 0.0464 (13) | 0.0503 (12) | 0.0424 (14) | −0.0240 (10) | 0.0000 (11) | −0.0173 (10) |
| C4 | 0.0531 (14) | 0.0452 (12) | 0.0505 (15) | −0.0199 (11) | 0.0035 (12) | −0.0254 (11) |
| C5 | 0.0446 (13) | 0.0413 (11) | 0.0513 (15) | −0.0126 (10) | 0.0001 (11) | −0.0190 (10) |
| C6 | 0.0478 (13) | 0.0330 (10) | 0.0422 (13) | −0.0137 (9) | −0.0056 (10) | −0.0116 (9) |
| C7 | 0.0378 (12) | 0.0528 (13) | 0.0481 (14) | −0.0185 (10) | 0.0013 (10) | −0.0155 (11) |
| C8 | 0.0344 (11) | 0.0291 (9) | 0.0309 (11) | −0.0115 (8) | 0.0031 (9) | −0.0091 (8) |
| S1—C8 | 1.698 (2) | C3—H3A | 0.9900 |
| N1—C1 | 1.284 (2) | C3—H3B | 0.9900 |
| N1—N2 | 1.385 (2) | C4—C5 | 1.518 (3) |
| N2—C8 | 1.348 (2) | C4—H4A | 0.9900 |
| N2—H1N | 0.88 (3) | C4—H4B | 0.9900 |
| N3—C8 | 1.317 (3) | C5—C6 | 1.523 (3) |
| N3—H2N | 0.81 (3) | C5—H5A | 0.9900 |
| N3—H3N | 0.88 (2) | C5—H5B | 0.9900 |
| C1—C6 | 1.506 (3) | C6—H6A | 0.9900 |
| C1—C2 | 1.508 (3) | C6—H6B | 0.9900 |
| C2—C7 | 1.518 (3) | C7—H7A | 0.9800 |
| C2—C3 | 1.532 (3) | C7—H7B | 0.9800 |
| C2—H2A | 1.0000 | C7—H7C | 0.9800 |
| C3—C4 | 1.521 (3) | ||
| C1—N1—N2 | 119.69 (16) | C5—C4—H4B | 109.6 |
| C8—N2—N1 | 117.61 (16) | C3—C4—H4B | 109.6 |
| C8—N2—H1N | 115.7 (16) | H4A—C4—H4B | 108.1 |
| N1—N2—H1N | 126.7 (16) | C4—C5—C6 | 111.68 (19) |
| C8—N3—H2N | 121.1 (17) | C4—C5—H5A | 109.3 |
| C8—N3—H3N | 118.9 (15) | C6—C5—H5A | 109.3 |
| H2N—N3—H3N | 119 (2) | C4—C5—H5B | 109.3 |
| N1—C1—C6 | 127.45 (18) | C6—C5—H5B | 109.3 |
| N1—C1—C2 | 116.52 (17) | H5A—C5—H5B | 107.9 |
| C6—C1—C2 | 116.01 (16) | C1—C6—C5 | 112.49 (18) |
| C1—C2—C7 | 113.51 (16) | C1—C6—H6A | 109.1 |
| C1—C2—C3 | 110.67 (17) | C5—C6—H6A | 109.1 |
| C7—C2—C3 | 112.02 (19) | C1—C6—H6B | 109.1 |
| C1—C2—H2A | 106.7 | C5—C6—H6B | 109.1 |
| C7—C2—H2A | 106.7 | H6A—C6—H6B | 107.8 |
| C3—C2—H2A | 106.7 | C2—C7—H7A | 109.5 |
| C4—C3—C2 | 112.57 (19) | C2—C7—H7B | 109.5 |
| C4—C3—H3A | 109.1 | H7A—C7—H7B | 109.5 |
| C2—C3—H3A | 109.1 | C2—C7—H7C | 109.5 |
| C4—C3—H3B | 109.1 | H7A—C7—H7C | 109.5 |
| C2—C3—H3B | 109.1 | H7B—C7—H7C | 109.5 |
| H3A—C3—H3B | 107.8 | N3—C8—N2 | 117.45 (18) |
| C5—C4—C3 | 110.46 (16) | N3—C8—S1 | 122.61 (15) |
| C5—C4—H4A | 109.6 | N2—C8—S1 | 119.92 (15) |
| C3—C4—H4A | 109.6 |
| H··· | ||||
| N2—H1N···S1i | 0.88 (3) | 2.61 (3) | 3.4645 (19) | 162 (2) |
| N3—H3N···S1ii | 0.88 (2) | 2.52 (2) | 3.3954 (19) | 170.9 (19) |
| N3—H2N···N1 | 0.81 (3) | 2.28 (2) | 2.601 (2) | 104.6 (19) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1 | 0.88 (3) | 2.61 (3) | 3.4645 (19) | 162 (2) |
| N3—H3 | 0.88 (2) | 2.52 (2) | 3.3954 (19) | 170.9 (19) |
| N3—H2 | 0.81 (3) | 2.28 (2) | 2.601 (2) | 104.6 (19) |
Symmetry codes: (i) ; (ii) .