Literature DB >> 22219978

[(2R,3S,5R)-3-Acet-oxy-5-(5-formyl-2,4-dioxo-1,2,3,4-tetra-hydro-pyrimidin-1-yl)-2,3,4,5-tetra-hydro-furan-2-yl]methyl acetate.

Xue-Fei Jia1, Nan Liu, Liang-Liang Fang, Xin-Ying Zhang.   

Abstract

In the two independent but very similar mol-ecules (A and B) of the title compound, C(14)H(16)N(2)O(8), both six-membered pyrimidine rings are nearly planar [maximum deviations = 0.010 (3) Å in A and 0.028 (3) Å in B]. The five-membered furan-ose ring in mol-ecule A adopts an envelope conformation, while the same ring in mol-ecule B has a twisted conformation. In the crystal, the A mol-ecules are linked via a pair of inter-molecular N-H⋯O hydrogen bonds, forming dimers. Each A mol-ecule is further linked to a B mol-ecule via a second N-H⋯O hydrogen bond. There are also a number of C-H⋯·O inter-actions present, leading to the formation of a three-dimensional network.

Entities:  

Year:  2011        PMID: 22219978      PMCID: PMC3247360          DOI: 10.1107/S1600536811041304

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the bioactivity of 5-substituted pyrimidine nucleosides, see: De Clercq (2005 ▶); Agrofoglio et al. (2003 ▶); Lee et al. (2009 ▶). For the use of the title compound as a synthon for the preparation of a variety of nucleoside derivatives, see: Fan et al. (2006a ▶,b ▶, 2010 ▶, 2011 ▶); Zhang et al. (2009 ▶). For related structures of uridines, see: Luo et al. (2007 ▶); Low & Wilson (1984 ▶).

Experimental

Crystal data

C28H32N4O16 M = 680.58 Orthorhombic, a = 15.5268 (18) Å b = 29.977 (4) Å c = 6.6207 (8) Å V = 3081.6 (6) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 296 K 0.24 × 0.18 × 0.09 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.971, T max = 0.989 23677 measured reflections 5719 independent reflections 3519 reflections with I > 2σ(I) R int = 0.060

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.110 S = 1.01 5719 reflections 437 parameters H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.17 e Å−3 Absolute structure: Flack (1983 ▶), 2320 Friedel pairs Flack parameter: −0.6 (12) Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811041304/su2320sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811041304/su2320Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811041304/su2320Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C28H32N4O16Dx = 1.467 Mg m3
Mr = 680.58Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P21212Cell parameters from 2422 reflections
a = 15.5268 (18) Åθ = 2.4–18.6°
b = 29.977 (4) ŵ = 0.12 mm1
c = 6.6207 (8) ÅT = 296 K
V = 3081.6 (6) Å3Block, colourless
Z = 40.24 × 0.18 × 0.09 mm
F(000) = 1424
Bruker SMART CCD area-detector diffractometer5719 independent reflections
Radiation source: fine-focus sealed tube3519 reflections with I > 2σ(I)
graphiteRint = 0.060
φ and ω scansθmax = 25.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −18→18
Tmin = 0.971, Tmax = 0.989k = −36→36
23677 measured reflectionsl = −8→8
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.110w = 1/[σ2(Fo2) + (0.0461P)2 + 0.0767P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
5719 reflectionsΔρmax = 0.14 e Å3
437 parametersΔρmin = −0.17 e Å3
0 restraintsAbsolute structure: Flack (1983), 2320 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.6 (12)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR andgoodness of fit S are based on F2, conventional R-factors R are basedon F, with F set to zero for negative F2. The threshold expression ofF2 > σ(F2) is used only for calculating R-factors(gt) etc. and isnot relevant to the choice of reflections for refinement. R-factors basedon F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.86095 (13)0.15062 (7)−0.1052 (3)0.0481 (8)
O20.92305 (14)0.23904 (7)−0.0130 (4)0.0536 (8)
O30.9059 (2)0.31223 (8)−0.0547 (5)0.0973 (13)
O40.69953 (13)0.16685 (7)0.1642 (3)0.0460 (8)
O50.68476 (16)0.19298 (8)0.4790 (4)0.0634 (9)
O60.91976 (14)0.03929 (7)0.0972 (4)0.0597 (9)
O71.20552 (15)0.06592 (8)0.0540 (4)0.0742 (10)
O81.17118 (16)0.20098 (9)0.0293 (5)0.0822 (11)
N10.96297 (14)0.11188 (8)0.0831 (4)0.0430 (9)
N21.06276 (15)0.05417 (8)0.0818 (4)0.0488 (10)
C10.87385 (18)0.12800 (9)0.0809 (5)0.0428 (11)
C20.85180 (19)0.16088 (10)0.2454 (5)0.0440 (11)
C30.78276 (17)0.18915 (10)0.1481 (5)0.0418 (11)
C40.80634 (19)0.18894 (10)−0.0762 (5)0.0421 (11)
C50.8510 (2)0.23042 (11)−0.1460 (5)0.0540 (12)
C60.9448 (2)0.28190 (13)0.0199 (6)0.0603 (14)
C71.0206 (2)0.28489 (12)0.1526 (7)0.0803 (19)
C80.6580 (2)0.17068 (11)0.3399 (6)0.0467 (11)
C90.5770 (2)0.14428 (12)0.3443 (6)0.0717 (16)
C100.9779 (2)0.06618 (10)0.0875 (5)0.0448 (11)
C111.1334 (2)0.08179 (11)0.0667 (5)0.0493 (12)
C121.11258 (18)0.12880 (10)0.0623 (5)0.0419 (11)
C131.03017 (19)0.14162 (10)0.0667 (5)0.0446 (11)
C141.1828 (2)0.16136 (13)0.0510 (5)0.0550 (12)
O91.01699 (14)0.43238 (7)0.3062 (3)0.0513 (8)
O101.01223 (18)0.44857 (9)−0.0227 (4)0.0786 (11)
O110.78072 (14)0.48878 (7)0.5019 (4)0.0563 (9)
O120.76091 (17)0.55682 (9)0.6310 (5)0.0820 (11)
O130.83321 (16)0.28502 (7)0.4225 (4)0.0648 (10)
O140.54241 (17)0.29279 (9)0.4668 (5)0.0914 (14)
O150.54287 (16)0.42833 (10)0.4218 (5)0.0932 (13)
O160.85943 (14)0.40460 (7)0.5944 (3)0.0543 (8)
N30.77201 (16)0.35465 (8)0.4263 (4)0.0470 (10)
N40.68780 (19)0.29072 (9)0.4549 (4)0.0581 (11)
C150.85591 (19)0.37705 (10)0.4219 (5)0.0488 (11)
C160.8695 (2)0.40735 (11)0.2421 (5)0.0483 (12)
C170.9270 (2)0.44370 (11)0.3260 (5)0.0446 (11)
C180.9070 (2)0.44455 (10)0.5522 (5)0.0444 (11)
C190.8576 (2)0.48391 (10)0.6264 (5)0.0533 (12)
C201.0522 (2)0.43648 (12)0.1203 (6)0.0550 (14)
C211.1458 (2)0.42467 (15)0.1230 (7)0.0840 (18)
C220.7370 (2)0.52717 (13)0.5227 (6)0.0597 (14)
C230.6581 (2)0.52785 (13)0.3963 (8)0.0840 (19)
C240.7698 (2)0.30800 (11)0.4335 (5)0.0503 (12)
C250.6102 (2)0.31309 (13)0.4535 (5)0.0610 (14)
C260.6196 (2)0.36078 (11)0.4387 (5)0.0497 (12)
C270.6985 (2)0.37920 (11)0.4317 (5)0.0477 (12)
C280.5422 (2)0.38840 (15)0.4283 (6)0.0667 (16)
H10.834500.102500.088700.0510*
H21.073300.026000.088300.0590*
H2A0.901500.178700.282300.0530*
H2B0.830100.145800.364600.0530*
H30.781300.219400.203900.0500*
H40.753700.18490−0.155600.0510*
H5A0.871200.22660−0.283500.0650*
H5B0.811300.25540−0.143200.0650*
H7A1.035100.315700.174000.1210*
H7B1.068400.269900.090400.1210*
H7C1.007900.271100.280000.1210*
H9A0.589800.113900.379300.1080*
H9B0.550200.145200.213600.1080*
H9C0.538500.156700.442900.1080*
H131.017700.171900.058400.0530*
H141.239200.151100.060900.0660*
H4A0.684800.262300.471200.0700*
H150.902100.354800.427800.0590*
H16A0.815300.419500.194400.0580*
H16B0.897500.391600.132200.0580*
H170.914400.472600.263100.0540*
H180.961600.443200.626100.0530*
H19A0.841400.479600.766500.0640*
H19B0.892700.510600.617200.0640*
H21A1.153700.395600.065200.1270*
H21B1.166300.424700.259800.1270*
H21C1.177600.446200.045600.1270*
H23A0.612100.513200.466800.1260*
H23B0.669100.512600.271300.1260*
H23C0.642100.558200.368900.1260*
H270.703000.410100.430600.0580*
H280.489000.374100.426700.0800*
U11U22U33U12U13U23
O10.0548 (13)0.0426 (12)0.0468 (14)0.0117 (10)0.0016 (12)0.0004 (11)
O20.0525 (14)0.0384 (13)0.0699 (16)−0.0016 (11)0.0001 (12)0.0071 (11)
O30.106 (2)0.0449 (15)0.141 (3)0.0053 (15)−0.016 (2)0.0169 (19)
O40.0391 (12)0.0470 (13)0.0520 (14)−0.0058 (11)0.0035 (11)−0.0026 (11)
O50.0716 (16)0.0605 (15)0.0581 (17)−0.0130 (13)0.0144 (14)−0.0046 (14)
O60.0457 (13)0.0382 (12)0.0953 (19)0.0004 (11)0.0056 (14)0.0012 (13)
O70.0418 (14)0.0747 (17)0.106 (2)0.0114 (12)0.0074 (14)0.0057 (16)
O80.0690 (17)0.0746 (19)0.103 (2)−0.0171 (15)0.0077 (16)−0.0053 (18)
N10.0351 (14)0.0342 (14)0.0596 (18)0.0014 (12)−0.0003 (14)0.0043 (14)
N20.0433 (16)0.0388 (14)0.0642 (19)0.0056 (12)0.0039 (15)0.0038 (15)
C10.0379 (18)0.0356 (17)0.055 (2)0.0017 (14)−0.0010 (17)0.0048 (18)
C20.0378 (19)0.050 (2)0.0441 (19)−0.0007 (16)−0.0002 (15)0.0034 (17)
C30.0336 (18)0.0367 (17)0.055 (2)−0.0043 (14)0.0011 (15)0.0000 (16)
C40.0408 (17)0.0406 (18)0.045 (2)0.0074 (15)−0.0028 (16)0.0008 (17)
C50.057 (2)0.051 (2)0.054 (2)0.0015 (17)−0.0032 (18)0.0143 (17)
C60.062 (2)0.048 (2)0.071 (3)−0.0061 (19)0.012 (2)0.004 (2)
C70.073 (3)0.064 (3)0.104 (4)−0.014 (2)0.002 (3)−0.005 (2)
C80.045 (2)0.0421 (19)0.053 (2)0.0000 (16)0.0072 (18)0.0053 (18)
C90.054 (2)0.082 (3)0.079 (3)−0.019 (2)0.015 (2)0.002 (2)
C100.0403 (19)0.045 (2)0.049 (2)0.0067 (16)0.0017 (17)−0.0023 (17)
C110.044 (2)0.058 (2)0.046 (2)0.0049 (18)0.0029 (17)−0.0002 (18)
C120.0345 (17)0.055 (2)0.0363 (19)−0.0038 (15)0.0058 (15)−0.0023 (17)
C130.048 (2)0.0408 (17)0.045 (2)−0.0033 (16)−0.0003 (17)−0.0025 (17)
C140.047 (2)0.061 (2)0.057 (2)−0.0062 (18)0.0075 (18)−0.006 (2)
O90.0400 (13)0.0585 (15)0.0554 (15)0.0020 (11)−0.0022 (11)−0.0017 (12)
O100.0779 (19)0.101 (2)0.0569 (17)0.0079 (16)0.0026 (15)0.0083 (16)
O110.0516 (14)0.0516 (15)0.0658 (16)0.0085 (12)−0.0076 (12)−0.0083 (12)
O120.083 (2)0.0629 (17)0.100 (2)0.0161 (15)0.0022 (17)−0.0230 (17)
O130.0690 (16)0.0471 (14)0.0783 (19)0.0118 (13)0.0046 (15)0.0023 (14)
O140.0703 (19)0.092 (2)0.112 (3)−0.0347 (16)0.0091 (17)0.0173 (18)
O150.0596 (18)0.092 (2)0.128 (3)0.0150 (16)0.0063 (17)0.003 (2)
O160.0700 (15)0.0476 (13)0.0452 (14)−0.0095 (12)−0.0084 (13)0.0002 (11)
N30.0451 (16)0.0400 (16)0.0560 (18)−0.0013 (13)−0.0042 (15)0.0018 (14)
N40.070 (2)0.0442 (16)0.060 (2)−0.0129 (16)0.0094 (17)0.0077 (15)
C150.0461 (19)0.0424 (18)0.058 (2)−0.0013 (15)−0.0072 (18)−0.0066 (19)
C160.043 (2)0.056 (2)0.046 (2)−0.0068 (17)−0.0020 (16)−0.0090 (17)
C170.039 (2)0.0429 (19)0.052 (2)0.0010 (16)−0.0065 (16)0.0002 (17)
C180.0422 (18)0.0400 (18)0.051 (2)0.0000 (15)−0.0083 (16)−0.0029 (17)
C190.051 (2)0.053 (2)0.056 (2)0.0004 (17)−0.0097 (18)−0.0086 (17)
C200.053 (2)0.055 (2)0.057 (3)−0.0045 (18)0.003 (2)−0.012 (2)
C210.052 (2)0.123 (4)0.077 (3)0.003 (2)0.010 (2)−0.029 (3)
C220.056 (2)0.057 (2)0.066 (3)0.010 (2)0.016 (2)−0.002 (2)
C230.061 (3)0.082 (3)0.109 (4)0.019 (2)−0.014 (3)−0.005 (3)
C240.062 (2)0.045 (2)0.044 (2)−0.0091 (18)0.0033 (19)−0.0013 (19)
C250.057 (2)0.076 (3)0.050 (2)−0.012 (2)0.0037 (19)0.005 (2)
C260.046 (2)0.063 (2)0.040 (2)−0.0008 (18)−0.0004 (17)0.0042 (18)
C270.049 (2)0.050 (2)0.044 (2)0.0031 (17)−0.0029 (17)−0.0006 (17)
C280.055 (2)0.088 (3)0.057 (3)−0.004 (2)0.007 (2)0.008 (3)
O1—C11.421 (4)C12—C131.336 (4)
O1—C41.441 (4)C12—C141.465 (5)
O2—C51.447 (4)C1—H10.9800
O2—C61.346 (4)C2—H2B0.9700
O3—C61.198 (5)C2—H2A0.9700
O4—C31.459 (3)C3—H30.9800
O4—C81.335 (4)C4—H40.9800
O5—C81.212 (4)C5—H5A0.9700
O6—C101.212 (4)C5—H5B0.9700
O7—C111.220 (4)C7—H7A0.9600
O8—C141.210 (5)C7—H7C0.9600
O9—C201.352 (4)C7—H7B0.9600
O9—C171.444 (4)C9—H9B0.9600
O10—C201.189 (5)C9—H9C0.9600
O11—C221.343 (4)C9—H9A0.9600
O11—C191.458 (4)C13—H130.9300
O12—C221.201 (5)C14—H140.9300
O13—C241.204 (4)C15—C161.512 (5)
O14—C251.219 (4)C16—C171.514 (5)
O15—C281.198 (5)C17—C181.530 (5)
O16—C181.435 (4)C18—C191.491 (4)
O16—C151.411 (4)C20—C211.496 (4)
N1—C101.390 (4)C22—C231.484 (5)
N1—C131.377 (4)C25—C261.440 (5)
N1—C11.466 (4)C26—C271.345 (4)
N2—C101.366 (4)C26—C281.461 (5)
N2—C111.378 (4)C15—H150.9800
N2—H20.8600C16—H16A0.9700
N3—C151.466 (4)C16—H16B0.9700
N3—C241.400 (4)C17—H170.9800
N3—C271.359 (4)C18—H180.9800
N4—C241.382 (4)C19—H19A0.9700
N4—C251.379 (4)C19—H19B0.9700
N4—H4A0.8600C21—H21A0.9600
C1—C21.508 (4)C21—H21B0.9600
C2—C31.511 (4)C21—H21C0.9600
C3—C41.530 (5)C23—H23A0.9600
C4—C51.497 (4)C23—H23B0.9600
C6—C71.471 (5)C23—H23C0.9600
C8—C91.486 (5)C27—H270.9300
C11—C121.446 (4)C28—H280.9300
C1—O1—C4110.4 (2)H9A—C9—H9B110.00
C5—O2—C6117.6 (3)H9A—C9—H9C109.00
C3—O4—C8116.9 (2)H9B—C9—H9C109.00
C17—O9—C20116.9 (2)C8—C9—H9A110.00
C19—O11—C22116.2 (3)C8—C9—H9B109.00
C15—O16—C18110.6 (2)N1—C13—H13119.00
C10—N1—C13120.9 (2)C12—C13—H13119.00
C1—N1—C10118.9 (2)O8—C14—H14118.00
C1—N1—C13120.1 (2)C12—C14—H14118.00
C10—N2—C11127.7 (3)O16—C15—C16106.3 (2)
C11—N2—H2116.00N3—C15—C16114.5 (3)
C10—N2—H2116.00O16—C15—N3106.7 (2)
C24—N3—C27121.3 (3)C15—C16—C17103.1 (3)
C15—N3—C24118.7 (2)O9—C17—C18106.8 (2)
C15—N3—C27119.9 (2)O9—C17—C16111.6 (3)
C24—N4—C25128.5 (3)C16—C17—C18104.6 (3)
C24—N4—H4A116.00O16—C18—C19109.4 (2)
C25—N4—H4A116.00C17—C18—C19116.1 (3)
O1—C1—N1107.4 (2)O16—C18—C17106.3 (2)
N1—C1—C2115.0 (2)O11—C19—C18108.3 (3)
O1—C1—C2106.4 (2)O9—C20—C21111.1 (3)
C1—C2—C3102.7 (3)O9—C20—O10122.8 (3)
O4—C3—C4106.3 (2)O10—C20—C21126.1 (4)
C2—C3—C4104.0 (2)O12—C22—C23125.6 (3)
O4—C3—C2109.9 (2)O11—C22—C23111.8 (3)
O1—C4—C3105.9 (2)O11—C22—O12122.6 (3)
O1—C4—C5110.4 (2)O13—C24—N3123.3 (3)
C3—C4—C5114.0 (3)O13—C24—N4123.0 (3)
O2—C5—C4108.6 (3)N3—C24—N4113.6 (3)
O2—C6—C7110.8 (3)O14—C25—N4120.7 (3)
O2—C6—O3122.1 (3)N4—C25—C26113.2 (3)
O3—C6—C7127.1 (4)O14—C25—C26126.0 (3)
O5—C8—C9124.7 (3)C25—C26—C28118.8 (3)
O4—C8—O5123.0 (3)C25—C26—C27120.2 (3)
O4—C8—C9112.3 (3)C27—C26—C28121.0 (3)
N1—C10—N2114.8 (3)N3—C27—C26123.0 (3)
O6—C10—N2123.0 (3)O15—C28—C26124.1 (3)
O6—C10—N1122.2 (3)O16—C15—H15110.00
N2—C11—C12114.2 (3)N3—C15—H15110.00
O7—C11—N2120.1 (3)C16—C15—H15110.00
O7—C11—C12125.7 (3)C15—C16—H16A111.00
C13—C12—C14121.5 (3)C15—C16—H16B111.00
C11—C12—C14118.9 (3)C17—C16—H16A111.00
C11—C12—C13119.6 (3)C17—C16—H16B111.00
N1—C13—C12122.8 (3)H16A—C16—H16B109.00
O8—C14—C12123.3 (3)O9—C17—H17111.00
N1—C1—H1109.00C16—C17—H17111.00
O1—C1—H1109.00C18—C17—H17111.00
C2—C1—H1109.00O16—C18—H18108.00
H2A—C2—H2B109.00C17—C18—H18108.00
C3—C2—H2B111.00C19—C18—H18108.00
C3—C2—H2A111.00O11—C19—H19A110.00
C1—C2—H2B111.00O11—C19—H19B110.00
C1—C2—H2A111.00C18—C19—H19A110.00
O4—C3—H3112.00C18—C19—H19B110.00
C4—C3—H3112.00H19A—C19—H19B108.00
C2—C3—H3112.00C20—C21—H21A110.00
C5—C4—H4109.00C20—C21—H21B109.00
O1—C4—H4109.00C20—C21—H21C110.00
C3—C4—H4109.00H21A—C21—H21B110.00
O2—C5—H5B110.00H21A—C21—H21C109.00
O2—C5—H5A110.00H21B—C21—H21C109.00
H5A—C5—H5B108.00C22—C23—H23A110.00
C4—C5—H5A110.00C22—C23—H23B109.00
C4—C5—H5B110.00C22—C23—H23C109.00
C6—C7—H7B109.00H23A—C23—H23B109.00
C6—C7—H7C110.00H23A—C23—H23C109.00
H7A—C7—H7B109.00H23B—C23—H23C110.00
H7A—C7—H7C109.00N3—C27—H27118.00
H7B—C7—H7C110.00C26—C27—H27119.00
C6—C7—H7A110.00O15—C28—H28118.00
C8—C9—H9C109.00C26—C28—H28118.00
C4—O1—C1—N1−142.9 (2)C24—N3—C15—O16−120.1 (3)
C4—O1—C1—C2−19.2 (3)C27—N3—C15—O1657.3 (4)
C1—O1—C4—C5122.9 (3)C24—N3—C15—C16122.7 (3)
C1—O1—C4—C3−1.0 (3)C24—N4—C25—C26−3.8 (5)
C5—O2—C6—C7−178.2 (3)C24—N4—C25—O14177.2 (3)
C6—O2—C5—C4−147.9 (3)C25—N4—C24—N35.6 (5)
C5—O2—C6—O31.0 (5)C25—N4—C24—O13−174.5 (3)
C8—O4—C3—C4−167.3 (2)O1—C1—C2—C331.3 (3)
C3—O4—C8—O53.2 (4)N1—C1—C2—C3150.1 (2)
C8—O4—C3—C280.8 (3)C1—C2—C3—C4−31.0 (3)
C3—O4—C8—C9−176.2 (3)C1—C2—C3—O482.5 (3)
C17—O9—C20—C21178.7 (3)C2—C3—C4—C5−101.1 (3)
C20—O9—C17—C18−170.0 (3)O4—C3—C4—O1−95.5 (2)
C17—O9—C20—O10−0.3 (5)C2—C3—C4—O120.5 (3)
C20—O9—C17—C1676.3 (3)O4—C3—C4—C5142.9 (2)
C19—O11—C22—O122.9 (5)C3—C4—C5—O251.7 (3)
C22—O11—C19—C18−168.1 (3)O1—C4—C5—O2−67.3 (3)
C19—O11—C22—C23−177.5 (3)O7—C11—C12—C13176.4 (3)
C18—O16—C15—N3−146.0 (2)O7—C11—C12—C14−3.0 (5)
C18—O16—C15—C16−23.4 (3)N2—C11—C12—C14178.7 (3)
C15—O16—C18—C19132.3 (3)N2—C11—C12—C13−2.0 (5)
C15—O16—C18—C176.1 (3)C13—C12—C14—O8−5.9 (5)
C10—N1—C1—O1−116.1 (3)C11—C12—C13—N12.5 (5)
C13—N1—C1—C2−58.8 (4)C11—C12—C14—O8173.5 (3)
C13—N1—C10—N22.3 (4)C14—C12—C13—N1−178.1 (3)
C10—N1—C1—C2125.7 (3)O16—C15—C16—C1730.7 (3)
C13—N1—C10—O6−178.3 (3)N3—C15—C16—C17148.1 (3)
C1—N1—C10—N2177.7 (3)C15—C16—C17—O988.9 (3)
C1—N1—C13—C12−178.1 (3)C15—C16—C17—C18−26.2 (3)
C1—N1—C10—O6−2.8 (5)C16—C17—C18—O1613.4 (3)
C10—N1—C13—C12−2.7 (5)O9—C17—C18—O16−105.0 (3)
C13—N1—C1—O159.4 (3)C16—C17—C18—C19−108.6 (3)
C11—N2—C10—N1−2.0 (5)O9—C17—C18—C19133.0 (3)
C11—N2—C10—O6178.6 (3)C17—C18—C19—O1152.1 (3)
C10—N2—C11—O7−176.6 (3)O16—C18—C19—O11−68.2 (3)
C10—N2—C11—C121.8 (5)O14—C25—C26—C27177.7 (4)
C15—N3—C24—N4174.7 (3)N4—C25—C26—C28177.8 (3)
C15—N3—C24—O13−5.2 (5)O14—C25—C26—C28−3.2 (5)
C27—N3—C24—N4−2.6 (4)N4—C25—C26—C27−1.2 (5)
C27—N3—C24—O13177.5 (3)C25—C26—C27—N33.9 (5)
C24—N3—C27—C26−1.8 (5)C27—C26—C28—O15−3.3 (6)
C27—N3—C15—C16−60.0 (4)C28—C26—C27—N3−175.1 (3)
C15—N3—C27—C26−179.1 (3)C25—C26—C28—O15177.7 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2···O6i0.861.962.817 (3)172
N4—H4A···O50.862.082.935 (4)173
C3—H3···O130.982.573.489 (4)156
C13—H13···O20.932.543.402 (4)155
C16—H16A···O7ii0.972.413.312 (4)155
C18—H18···O10iii0.982.463.257 (4)138
C21—H21A···O4iv0.962.513.441 (5)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O6i0.861.962.817 (3)172
N4—H4A⋯O50.862.082.935 (4)173
C3—H3⋯O130.982.573.489 (4)156
C13—H13⋯O20.932.543.402 (4)155
C16—H16A⋯O7ii0.972.413.312 (4)155
C18—H18⋯O10iii0.982.463.257 (4)138
C21—H21A⋯O4iv0.962.513.441 (5)162

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  9 in total

Review 1.  Palladium-assisted routes to nucleosides.

Authors:  Luigi A Agrofoglio; Isabelle Gillaizeau; Yoshio Saito
Journal:  Chem Rev       Date:  2003-05       Impact factor: 60.622

2.  Assembling a smallpox biodefense by interrogating 5-substituted pyrimidine nucleoside chemical space.

Authors:  Xuesen Fan; Xinying Zhang; Longhu Zhou; Kathy A Keith; Earl R Kern; Paul F Torrence
Journal:  Antiviral Res       Date:  2006-05-19       Impact factor: 5.970

3.  5-(Dimethoxymethyl)-2'-deoxyuridine: a novel gem diether nucleoside with anti-orthopoxvirus activity.

Authors:  Xuesen Fan; Xinying Zhang; Longhu Zhou; Kathy A Keith; Earl R Kern; Paul F Torrence
Journal:  J Med Chem       Date:  2006-06-01       Impact factor: 7.446

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 5.  Antiviral drug discovery and development: where chemistry meets with biomedicine.

Authors:  Erik De Clercq
Journal:  Antiviral Res       Date:  2005-08       Impact factor: 5.970

6.  Tandem reactions leading to bicyclic pyrimidine nucleosides and benzopyran-4-ones.

Authors:  Xuesen Fan; Yangyang Wang; Yingying Qu; Haiyun Xu; Yan He; Xinying Zhang; Jianji Wang
Journal:  J Org Chem       Date:  2011-01-07       Impact factor: 4.354

7.  Ionic liquid mediated and promoted eco-friendly preparation of thiazolidinone and pyrimidine nucleoside-thiazolidinone hybrids and their antiparasitic activities.

Authors:  Xinying Zhang; Xiaoyan Li; Dongfang Li; Guirong Qu; Jianji Wang; Philippe M Loiseau; Xuesen Fan
Journal:  Bioorg Med Chem Lett       Date:  2009-09-29       Impact factor: 2.823

8.  Practical and efficient synthesis of pyrano[3,2-c]pyridone, pyrano[4,3-b]pyran and their hybrids with nucleoside as potential antiviral and antileishmanial agents.

Authors:  Xuesen Fan; Dong Feng; Yingying Qu; Xinying Zhang; Jianji Wang; Philippe M Loiseau; Graciela Andrei; Robert Snoeck; Erik De Clercq
Journal:  Bioorg Med Chem Lett       Date:  2010-01-04       Impact factor: 2.823

9.  Synthesis of 5-isoxazol-5-yl-2'-deoxyuridines exhibiting antiviral activity against HSV and several RNA viruses.

Authors:  Yoon-Suk Lee; Sun Min Park; Byeang Hyean Kim
Journal:  Bioorg Med Chem Lett       Date:  2008-12-31       Impact factor: 2.823

  9 in total

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