Literature DB >> 22219965

[1-(3-Chloro-phen-yl)-1H-1,2,3-triazol-4-yl]methanol hemihydrate.

Nübia Boechat, Maria de Lourdes G Ferreira, Monica M Bastos, James L Wardell, Solange M S V Wardell, Edward R T Tiekink.   

Abstract

The asymmetric unit of the title hydrate, C(9)H(8)ClN(3)O·0.5H(2)O, comprises two independent 1,2,3-triazole mol-ecules and a water mol-ecule of crystallization. The dihedral angles between the six- and five-membered rings in the 1,2,3-triazole mol-ecules are 12.71 (19) and 17.3 (2)°. The most significant different between them is found in the relative orientations of the terminal CH(2)OH groups with one being close to perpendicular to the five-membered ring [N-C-C-O torsion angle = 82.2 (5)°], while in the other mol-ecule, a notable deviation from a perpendicular disposition is found [torsion angle = -60.3 (5)°]. Supra-molecular chains feature in the crystal packing sustained by O-H⋯(O,N) inter-actions along the a-axis direction. The chains are connected via C-H⋯N inter-actions and the resultant layers stack along the b axis.

Entities:  

Year:  2011        PMID: 22219965      PMCID: PMC3247347          DOI: 10.1107/S1600536811041560

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the synthesis, biological activity and structures of 1,2,3-triazole derivatives, see: Boechat et al. (2010 ▶, 2011 ▶); Costa et al. (2006a ▶,b ▶); Ferreira et al. (2007 ▶); Jordão et al. (2009 ▶). For the synthesis, see: Boechat et al. (2011 ▶). For additional geometric analysis, see: Spek (2009 ▶).

Experimental

Crystal data

C9H8ClN3O·0.5H2O M = 218.64 Triclinic, a = 6.0078 (4) Å b = 7.4897 (4) Å c = 22.3145 (15) Å α = 88.818 (4)° β = 89.901 (2)° γ = 80.493 (4)° V = 990.07 (11) Å3 Z = 4 Mo Kα radiation μ = 0.36 mm−1 T = 120 K 0.18 × 0.18 × 0.02 mm

Data collection

Bruker–Nonius APEX II CCD camera on κ-goniostat diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.843, T max = 1.000 10830 measured reflections 3909 independent reflections 2948 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.163 S = 1.00 3909 reflections 274 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.34 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶), QMol (Gans & Shalloway, 2001 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811041560/hb6439sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811041560/hb6439Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811041560/hb6439Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H8ClN3O·0.5H2OZ = 4
Mr = 218.64F(000) = 452
Triclinic, P1Dx = 1.467 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.0078 (4) ÅCell parameters from 19812 reflections
b = 7.4897 (4) Åθ = 2.9–27.5°
c = 22.3145 (15) ŵ = 0.36 mm1
α = 88.818 (4)°T = 120 K
β = 89.901 (2)°Plate, colourless
γ = 80.493 (4)°0.18 × 0.18 × 0.02 mm
V = 990.07 (11) Å3
Bruker–Nonius APEX II CCD camera on κ-goniostat diffractometer3909 independent reflections
Radiation source: Bruker-Nonius FR591 rotating anode2948 reflections with I > 2σ(I)
10cm confocal mirrorsRint = 0.038
Detector resolution: 9.091 pixels mm-1θmax = 26.5°, θmin = 2.9°
φ and ω scansh = −7→7
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −9→9
Tmin = 0.843, Tmax = 1.000l = −28→28
10830 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.163H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0446P)2 + 2.5602P] where P = (Fo2 + 2Fc2)/3
3909 reflections(Δ/σ)max = 0.012
274 parametersΔρmax = 0.41 e Å3
5 restraintsΔρmin = −0.34 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.85344 (17)0.75800 (15)0.46687 (4)0.0449 (3)
O10.5639 (6)0.7737 (5)0.05307 (13)0.0595 (9)
H1O0.629 (9)0.747 (7)0.0204 (13)0.089*
N10.6411 (5)0.8503 (4)0.24523 (13)0.0297 (6)
N20.8433 (5)0.7528 (4)0.23011 (14)0.0386 (7)
N30.8614 (6)0.7674 (4)0.17193 (14)0.0424 (8)
C10.6580 (6)0.8250 (5)0.41004 (15)0.0304 (7)
C20.4384 (6)0.8954 (5)0.42488 (16)0.0343 (8)
H20.39320.90550.46570.041*
C30.2852 (6)0.9509 (5)0.37926 (15)0.0331 (8)
H30.13381.00050.38890.040*
C40.3494 (6)0.9352 (5)0.31987 (16)0.0317 (8)
H40.24260.97240.28890.038*
C50.5708 (6)0.8647 (4)0.30588 (15)0.0280 (7)
C60.7280 (6)0.8092 (5)0.35095 (15)0.0314 (8)
H60.88010.76140.34140.038*
C70.5315 (6)0.9254 (5)0.19577 (15)0.0322 (8)
H70.38700.99920.19400.039*
C80.6716 (7)0.8731 (5)0.14894 (16)0.0381 (9)
C90.6412 (8)0.9160 (6)0.08392 (17)0.0484 (11)
H9A0.53091.02890.07840.058*
H9B0.78670.93680.06650.058*
Cl20.7137 (2)0.31120 (15)0.43211 (4)0.0519 (3)
O21.1922 (7)0.3320 (5)0.04279 (18)0.0843 (14)
H2O1.219 (12)0.422 (6)0.062 (3)0.126*
N40.7744 (5)0.2978 (4)0.20400 (13)0.0306 (6)
N50.9702 (5)0.1798 (5)0.21008 (15)0.0433 (8)
N61.0590 (6)0.1604 (5)0.15647 (16)0.0485 (9)
C100.5956 (6)0.3531 (5)0.36144 (16)0.0348 (8)
C110.3706 (6)0.4305 (5)0.35577 (16)0.0359 (8)
H110.27930.45870.39020.043*
C120.2826 (6)0.4657 (5)0.29895 (17)0.0389 (9)
H120.12930.52100.29430.047*
C130.4137 (6)0.4217 (5)0.24830 (16)0.0318 (8)
H130.35060.44450.20930.038*
C140.6367 (6)0.3444 (4)0.25557 (16)0.0309 (8)
C150.7315 (6)0.3090 (5)0.31195 (16)0.0323 (8)
H150.88550.25580.31660.039*
C160.7421 (6)0.3525 (5)0.14617 (16)0.0350 (8)
H160.61880.43480.12980.042*
C170.9245 (7)0.2643 (5)0.11626 (18)0.0395 (9)
C180.9826 (8)0.2697 (6)0.05057 (19)0.0538 (12)
H18A0.99280.14710.03390.065*
H18B0.86230.35160.02870.065*
O1W1.2489 (5)0.6147 (4)0.10634 (13)0.0491 (7)
H1W1.143 (6)0.661 (6)0.1286 (19)0.074*
H2W1.293 (8)0.698 (5)0.086 (2)0.074*
U11U22U33U12U13U23
Cl10.0387 (5)0.0620 (7)0.0332 (5)−0.0063 (4)−0.0052 (4)0.0013 (4)
O10.081 (2)0.077 (2)0.0334 (15)−0.0501 (19)0.0214 (15)−0.0252 (15)
N10.0308 (16)0.0279 (15)0.0314 (15)−0.0076 (12)0.0057 (12)−0.0036 (12)
N20.0380 (18)0.0384 (18)0.0380 (17)−0.0016 (14)0.0155 (14)−0.0037 (13)
N30.049 (2)0.0433 (19)0.0375 (18)−0.0135 (15)0.0174 (16)−0.0073 (14)
C10.0303 (18)0.0333 (19)0.0288 (17)−0.0085 (14)−0.0026 (14)−0.0010 (14)
C20.037 (2)0.039 (2)0.0283 (18)−0.0112 (16)0.0055 (16)−0.0051 (15)
C30.0289 (18)0.039 (2)0.0310 (18)−0.0040 (15)0.0073 (15)−0.0030 (15)
C40.0339 (19)0.0316 (19)0.0298 (18)−0.0061 (14)0.0050 (15)−0.0024 (14)
C50.0308 (18)0.0259 (17)0.0283 (17)−0.0074 (13)0.0036 (14)−0.0025 (13)
C60.0280 (18)0.0317 (19)0.0348 (19)−0.0056 (14)0.0070 (15)−0.0043 (14)
C70.0345 (19)0.0354 (19)0.0290 (18)−0.0120 (15)0.0024 (15)−0.0039 (14)
C80.048 (2)0.038 (2)0.0327 (19)−0.0193 (17)0.0104 (17)−0.0109 (16)
C90.070 (3)0.051 (3)0.032 (2)−0.032 (2)0.014 (2)−0.0089 (18)
Cl20.0633 (7)0.0630 (7)0.0319 (5)−0.0187 (5)−0.0054 (5)0.0050 (4)
O20.093 (3)0.094 (3)0.085 (3)−0.067 (2)0.063 (2)−0.049 (2)
N40.0293 (15)0.0294 (15)0.0333 (16)−0.0048 (12)0.0040 (12)−0.0042 (12)
N50.0298 (17)0.050 (2)0.047 (2)0.0020 (14)0.0020 (15)−0.0105 (15)
N60.0359 (19)0.057 (2)0.053 (2)−0.0086 (16)0.0100 (17)−0.0177 (17)
C100.043 (2)0.034 (2)0.0289 (18)−0.0136 (16)−0.0044 (16)0.0042 (14)
C110.041 (2)0.036 (2)0.0318 (19)−0.0101 (16)0.0087 (16)−0.0011 (15)
C120.034 (2)0.036 (2)0.045 (2)−0.0018 (16)0.0087 (17)−0.0016 (16)
C130.0333 (19)0.0312 (19)0.0316 (18)−0.0075 (14)−0.0006 (15)−0.0011 (14)
C140.0329 (19)0.0259 (18)0.0355 (19)−0.0087 (14)0.0080 (15)−0.0039 (14)
C150.0308 (19)0.0333 (19)0.0340 (19)−0.0086 (14)−0.0009 (15)0.0027 (14)
C160.041 (2)0.034 (2)0.0316 (19)−0.0113 (16)0.0063 (16)−0.0002 (15)
C170.044 (2)0.038 (2)0.042 (2)−0.0190 (17)0.0149 (18)−0.0105 (17)
C180.061 (3)0.063 (3)0.046 (2)−0.033 (2)0.026 (2)−0.019 (2)
O1W0.0453 (17)0.065 (2)0.0381 (16)−0.0109 (14)0.0155 (13)−0.0064 (14)
Cl1—C11.739 (4)O2—C181.423 (5)
O1—C91.422 (5)O2—H2O0.840 (10)
O1—H1O0.839 (10)N4—C161.350 (4)
N1—C71.350 (4)N4—N51.355 (4)
N1—N21.356 (4)N4—C141.431 (4)
N1—C51.418 (4)N5—N61.310 (5)
N2—N31.307 (4)N6—C171.353 (5)
N3—C81.370 (5)C10—C111.385 (5)
C1—C21.380 (5)C10—C151.385 (5)
C1—C61.385 (5)C11—C121.378 (5)
C2—C31.384 (5)C11—H110.9500
C2—H20.9500C12—C131.390 (5)
C3—C41.382 (5)C12—H120.9500
C3—H30.9500C13—C141.377 (5)
C4—C51.385 (5)C13—H130.9500
C4—H40.9500C14—C151.384 (5)
C5—C61.390 (5)C15—H150.9500
C6—H60.9500C16—C171.364 (5)
C7—C81.363 (5)C16—H160.9500
C7—H70.9500C17—C181.507 (5)
C8—C91.485 (5)C18—H18A0.9900
C9—H9A0.9900C18—H18B0.9900
C9—H9B0.9900O1W—H1W0.840 (10)
Cl2—C101.731 (4)O1W—H2W0.838 (10)
C9—O1—H1O115 (4)C16—N4—N5110.3 (3)
C7—N1—N2110.3 (3)C16—N4—C14130.2 (3)
C7—N1—C5128.6 (3)N5—N4—C14119.5 (3)
N2—N1—C5121.1 (3)N6—N5—N4106.6 (3)
N3—N2—N1106.9 (3)N5—N6—C17109.9 (3)
N2—N3—C8109.7 (3)C11—C10—C15121.9 (3)
C2—C1—C6121.7 (3)C11—C10—Cl2119.7 (3)
C2—C1—Cl1119.3 (3)C15—C10—Cl2118.5 (3)
C6—C1—Cl1119.0 (3)C12—C11—C10118.3 (3)
C1—C2—C3118.8 (3)C12—C11—H11120.8
C1—C2—H2120.6C10—C11—H11120.8
C3—C2—H2120.6C11—C12—C13121.3 (4)
C4—C3—C2120.9 (3)C11—C12—H12119.4
C4—C3—H3119.6C13—C12—H12119.4
C2—C3—H3119.6C14—C13—C12118.9 (3)
C3—C4—C5119.5 (3)C14—C13—H13120.6
C3—C4—H4120.3C12—C13—H13120.6
C5—C4—H4120.3C13—C14—C15121.4 (3)
C6—C5—C4120.7 (3)C13—C14—N4119.7 (3)
C6—C5—N1119.0 (3)C15—C14—N4118.8 (3)
C4—C5—N1120.4 (3)C14—C15—C10118.2 (3)
C5—C6—C1118.5 (3)C14—C15—H15120.9
C5—C6—H6120.7C10—C15—H15120.9
C1—C6—H6120.7N4—C16—C17105.2 (3)
N1—C7—C8105.6 (3)N4—C16—H16127.4
N1—C7—H7127.2C17—C16—H16127.4
C8—C7—H7127.2N6—C17—C16108.0 (3)
C7—C8—N3107.5 (3)N6—C17—C18122.0 (4)
C7—C8—C9129.8 (4)C16—C17—C18129.9 (4)
N3—C8—C9122.7 (3)O2—C18—C17109.9 (4)
O1—C9—C8111.6 (3)O2—C18—H18A109.7
O1—C9—H9A109.3C17—C18—H18A109.7
C8—C9—H9A109.3O2—C18—H18B109.7
O1—C9—H9B109.3C17—C18—H18B109.7
C8—C9—H9B109.3H18A—C18—H18B108.2
H9A—C9—H9B108.0H1W—O1W—H2W109 (4)
C18—O2—H2O120 (5)
C7—N1—N2—N30.5 (4)C16—N4—N5—N6−0.2 (4)
C5—N1—N2—N3−179.0 (3)C14—N4—N5—N6179.2 (3)
N1—N2—N3—C8−0.3 (4)N4—N5—N6—C170.3 (4)
C6—C1—C2—C30.1 (5)C15—C10—C11—C12−0.7 (5)
Cl1—C1—C2—C3179.0 (3)Cl2—C10—C11—C12178.7 (3)
C1—C2—C3—C40.5 (5)C10—C11—C12—C131.3 (5)
C2—C3—C4—C5−0.7 (5)C11—C12—C13—C14−1.1 (5)
C3—C4—C5—C60.3 (5)C12—C13—C14—C150.4 (5)
C3—C4—C5—N1−178.9 (3)C12—C13—C14—N4179.9 (3)
C7—N1—C5—C6−166.4 (3)C16—N4—C14—C1317.2 (5)
N2—N1—C5—C612.9 (5)N5—N4—C14—C13−162.1 (3)
C7—N1—C5—C412.8 (5)C16—N4—C14—C15−163.2 (3)
N2—N1—C5—C4−167.9 (3)N5—N4—C14—C1517.4 (5)
C4—C5—C6—C10.3 (5)C13—C14—C15—C100.1 (5)
N1—C5—C6—C1179.5 (3)N4—C14—C15—C10−179.4 (3)
C2—C1—C6—C5−0.5 (5)C11—C10—C15—C140.0 (5)
Cl1—C1—C6—C5−179.4 (3)Cl2—C10—C15—C14−179.4 (3)
N2—N1—C7—C8−0.4 (4)N5—N4—C16—C170.1 (4)
C5—N1—C7—C8179.0 (3)C14—N4—C16—C17−179.3 (3)
N1—C7—C8—N30.2 (4)N5—N6—C17—C16−0.3 (4)
N1—C7—C8—C9−179.4 (3)N5—N6—C17—C18−179.8 (3)
N2—N3—C8—C70.1 (4)N4—C16—C17—N60.1 (4)
N2—N3—C8—C9179.7 (3)N4—C16—C17—C18179.6 (4)
C7—C8—C9—O1−98.3 (5)N6—C17—C18—O2−60.3 (5)
N3—C8—C9—O182.2 (5)C16—C17—C18—O2120.2 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1o···O2i0.84 (4)1.82 (4)2.651 (5)170 (5)
O2—H2o···O1w0.84 (6)1.80 (5)2.641 (5)174 (7)
O1w—H1w···N30.84 (4)2.00 (4)2.837 (5)172 (4)
O1w—H2w···O1ii0.84 (4)1.95 (5)2.663 (5)142 (4)
C16—H16···O1wiii0.952.453.383 (5)166
C7—H7···N6iv0.952.283.197 (5)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1o⋯O2i0.84 (4)1.82 (4)2.651 (5)170 (5)
O2—H2o⋯O1w0.84 (6)1.80 (5)2.641 (5)174 (7)
O1w—H1w⋯N30.84 (4)2.00 (4)2.837 (5)172 (4)
O1w—H2w⋯O1ii0.84 (4)1.95 (5)2.663 (5)142 (4)
C16—H16⋯O1wiii0.952.453.383 (5)166
C7—H7⋯N6iv0.952.283.197 (5)161

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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