Literature DB >> 22219940

1-(1-Adamantylmeth-yl)-1H-benzimidazole.

Jarmila Cernochová, Marek Nečas, Ivo Kuřitka, Robert Vícha.   

Abstract

The asymmetric unit of the title compound, C(18)H(22)N(2), contains two independent mol-ecules which differ slightly with respect to the torsion angles involving the atoms joining the adamantyl and benzimidazole groups. The bond angles in the adamantane cage vary within the range 108.27 (9)-110.55 (10)°. The benzimidazole ring system in both mol-ecules is essentially planar, the maximum deviations from the best planes being 0.0134 (15) and 0.0229 (14) Å. In the crystal, weak C-H⋯π inter-actions link the molecules.

Entities:  

Year:  2011        PMID: 22219940      PMCID: PMC3247322          DOI: 10.1107/S1600536811041018

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, spectroscopic characterization and biological activity of the title compound, see: Hille et al. (2011 ▶). For background to C(sp 2)—H⋯π inter­actions, see: Takahashi et al. (2010 ▶). For two polymorphs of a related structure, see: Lei & Zhou (2009 ▶); Zhang et al. (2010 ▶).

Experimental

Crystal data

C18H22N2 M = 266.38 Monoclinic, a = 22.0249 (9) Å b = 6.4628 (1) Å c = 22.2739 (8) Å β = 118.694 (5)° V = 2781.2 (2) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 120 K 0.30 × 0.20 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur Sapphire2 diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009 ▶) T min = 0.928, T max = 1.000 32353 measured reflections 4899 independent reflections 3314 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.064 S = 0.83 4899 reflections 361 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.16 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2009 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811041018/lh5341sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811041018/lh5341Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811041018/lh5341Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H22N2F(000) = 1152
Mr = 266.38Dx = 1.272 Mg m3
Monoclinic, P21/nMelting point: 486 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 22.0249 (9) ÅCell parameters from 9351 reflections
b = 6.4628 (1) Åθ = 2.8–27.3°
c = 22.2739 (8) ŵ = 0.08 mm1
β = 118.694 (5)°T = 120 K
V = 2781.2 (2) Å3Block, colourless
Z = 80.30 × 0.20 × 0.20 mm
Oxford Diffraction Xcalibur Sapphire2 diffractometer4899 independent reflections
Radiation source: fine-focus sealed tube3314 reflections with I > 2σ(I)
graphiteRint = 0.034
Detector resolution: 8.4353 pixels mm-1θmax = 25.0°, θmin = 3.2°
ω scansh = −26→17
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009)k = −7→7
Tmin = 0.928, Tmax = 1.000l = −26→26
32353 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.064H-atom parameters constrained
S = 0.83w = 1/[σ2(Fo2) + (0.0354P)2] where P = (Fo2 + 2Fc2)/3
4899 reflections(Δ/σ)max < 0.001
361 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.58857 (5)0.07364 (14)0.28113 (5)0.0206 (2)
N20.55730 (5)0.39787 (15)0.24104 (5)0.0258 (3)
C10.58788 (6)0.27873 (18)0.29503 (6)0.0238 (3)
H10.60800.33120.34040.029*
C20.53553 (6)0.26067 (18)0.18631 (6)0.0212 (3)
C30.49849 (6)0.2979 (2)0.11594 (6)0.0272 (3)
H30.48470.43400.09860.033*
C40.48257 (7)0.1313 (2)0.07262 (6)0.0297 (3)
H40.45740.15310.02460.036*
C50.50261 (6)−0.0698 (2)0.09772 (6)0.0290 (3)
H50.4909−0.18110.06620.035*
C60.53897 (6)−0.11098 (19)0.16698 (6)0.0249 (3)
H60.5526−0.24740.18400.030*
C70.55451 (6)0.05820 (18)0.21038 (6)0.0201 (3)
C80.62286 (6)−0.09207 (18)0.33114 (6)0.0221 (3)
H8A0.6009−0.22550.31000.026*
H8B0.6150−0.06870.37080.026*
C90.70077 (6)−0.10925 (17)0.35702 (5)0.0170 (3)
C100.73908 (6)0.08829 (17)0.39375 (6)0.0204 (3)
H10A0.72230.20610.36140.025*
H10B0.72930.11910.43180.025*
C110.81690 (6)0.06242 (18)0.42177 (6)0.0227 (3)
H110.84120.19210.44580.027*
C120.83131 (7)0.01928 (18)0.36233 (6)0.0248 (3)
H12A0.88170.00390.37980.030*
H12B0.81480.13680.32980.030*
C130.79412 (6)−0.17918 (18)0.32558 (6)0.0222 (3)
H130.8035−0.20680.28660.027*
C140.82057 (7)−0.36073 (18)0.37585 (6)0.0255 (3)
H14A0.8709−0.37860.39340.031*
H14B0.7970−0.48990.35220.031*
C150.80601 (7)−0.31763 (18)0.43533 (6)0.0239 (3)
H150.8231−0.43600.46830.029*
C160.72824 (7)−0.29034 (18)0.40795 (6)0.0229 (3)
H16A0.7189−0.26350.44650.027*
H16B0.7039−0.41920.38490.027*
C170.71637 (6)−0.15487 (18)0.29825 (6)0.0210 (3)
H17A0.6924−0.28350.27460.025*
H17B0.6988−0.04030.26470.025*
C180.84322 (7)−0.11922 (18)0.47179 (6)0.0276 (3)
H18A0.8347−0.09180.51080.033*
H18B0.8937−0.13560.48990.033*
N210.81236 (5)0.11037 (14)0.61146 (5)0.0206 (2)
N220.77666 (6)0.43222 (15)0.57082 (5)0.0266 (3)
C210.82934 (7)0.31252 (19)0.60867 (6)0.0247 (3)
H210.87560.36210.63230.030*
C220.71997 (7)0.29919 (18)0.54557 (6)0.0221 (3)
C230.65052 (7)0.3378 (2)0.50043 (6)0.0276 (3)
H230.63510.47280.48280.033*
C240.60493 (7)0.1751 (2)0.48206 (6)0.0297 (3)
H240.55720.19880.45160.036*
C250.62717 (7)−0.0254 (2)0.50718 (6)0.0279 (3)
H250.5942−0.13440.49310.033*
C260.69569 (7)−0.06793 (19)0.55175 (6)0.0231 (3)
H260.7109−0.20350.56890.028*
C270.74142 (7)0.09792 (18)0.57037 (6)0.0202 (3)
C280.86030 (6)−0.05658 (18)0.65027 (6)0.0211 (3)
H28A0.9047−0.03290.65030.025*
H28B0.8411−0.18910.62640.025*
C290.87474 (6)−0.07727 (17)0.72453 (6)0.0170 (3)
C300.90524 (6)0.12265 (17)0.76505 (6)0.0196 (3)
H30A0.94750.16110.76250.023*
H30B0.87130.23650.74470.023*
C310.92319 (6)0.09273 (18)0.83991 (6)0.0214 (3)
H310.94330.22370.86580.026*
C320.97601 (6)−0.08287 (18)0.87178 (6)0.0252 (3)
H32A1.0189−0.04790.87000.030*
H32B0.9879−0.10140.92030.030*
C330.94509 (7)−0.28301 (18)0.83216 (6)0.0227 (3)
H330.9794−0.39800.85280.027*
C340.87901 (7)−0.33678 (18)0.83533 (6)0.0254 (3)
H34A0.8592−0.46720.81020.031*
H34B0.8900−0.35710.88350.031*
C350.82659 (6)−0.16154 (18)0.80349 (6)0.0223 (3)
H350.7834−0.19670.80560.027*
C360.80937 (6)−0.13371 (18)0.72869 (6)0.0208 (3)
H36A0.7895−0.26360.70320.025*
H36B0.7744−0.02280.70740.025*
C370.92803 (6)−0.25205 (17)0.75754 (6)0.0210 (3)
H37A0.9092−0.38210.73170.025*
H37B0.9708−0.21710.75560.025*
C380.85747 (7)0.03925 (18)0.84316 (6)0.0239 (3)
H38A0.82350.15310.82300.029*
H38B0.86830.02170.89150.029*
U11U22U33U12U13U23
N10.0174 (6)0.0193 (6)0.0220 (5)0.0012 (5)0.0070 (5)0.0012 (4)
N20.0240 (7)0.0219 (6)0.0326 (6)0.0042 (5)0.0145 (5)0.0022 (5)
C10.0203 (8)0.0231 (7)0.0282 (7)0.0005 (6)0.0118 (6)−0.0036 (6)
C20.0135 (8)0.0227 (7)0.0282 (7)0.0014 (6)0.0104 (6)0.0035 (5)
C30.0192 (8)0.0300 (7)0.0336 (7)0.0041 (6)0.0136 (6)0.0109 (6)
C40.0196 (8)0.0416 (9)0.0237 (7)−0.0017 (7)0.0070 (6)0.0063 (6)
C50.0239 (9)0.0330 (8)0.0249 (7)−0.0076 (7)0.0077 (6)−0.0033 (6)
C60.0218 (8)0.0231 (7)0.0263 (7)−0.0038 (6)0.0087 (6)0.0005 (6)
C70.0124 (8)0.0242 (7)0.0221 (7)−0.0016 (6)0.0071 (6)0.0025 (5)
C80.0247 (8)0.0200 (7)0.0218 (7)−0.0003 (6)0.0113 (6)0.0023 (5)
C90.0177 (8)0.0164 (6)0.0163 (6)0.0014 (5)0.0076 (6)0.0010 (5)
C100.0235 (8)0.0178 (6)0.0190 (6)0.0025 (6)0.0094 (6)−0.0011 (5)
C110.0193 (8)0.0190 (7)0.0244 (7)−0.0009 (6)0.0063 (6)−0.0052 (5)
C120.0216 (8)0.0223 (7)0.0315 (7)0.0026 (6)0.0134 (7)0.0043 (6)
C130.0258 (9)0.0226 (7)0.0232 (6)0.0017 (6)0.0156 (6)−0.0014 (5)
C140.0254 (8)0.0194 (7)0.0329 (7)0.0030 (6)0.0149 (7)−0.0008 (6)
C150.0253 (9)0.0221 (7)0.0221 (7)0.0077 (6)0.0097 (6)0.0075 (5)
C160.0303 (9)0.0203 (7)0.0207 (6)0.0020 (6)0.0143 (6)0.0025 (5)
C170.0262 (8)0.0186 (6)0.0171 (6)−0.0011 (6)0.0095 (6)−0.0013 (5)
C180.0235 (8)0.0330 (8)0.0199 (7)0.0052 (6)0.0053 (6)−0.0007 (6)
N210.0234 (7)0.0184 (6)0.0190 (5)0.0037 (5)0.0094 (5)0.0028 (4)
N220.0324 (7)0.0223 (6)0.0233 (6)0.0043 (6)0.0119 (5)0.0039 (5)
C210.0309 (9)0.0223 (7)0.0222 (7)−0.0010 (6)0.0138 (6)0.0012 (6)
C220.0292 (9)0.0221 (7)0.0160 (6)0.0058 (6)0.0116 (6)0.0011 (5)
C230.0354 (9)0.0260 (7)0.0185 (7)0.0111 (7)0.0108 (7)0.0020 (6)
C240.0256 (9)0.0367 (8)0.0196 (7)0.0097 (7)0.0051 (6)−0.0019 (6)
C250.0279 (9)0.0321 (8)0.0200 (7)−0.0007 (7)0.0085 (7)−0.0054 (6)
C260.0280 (9)0.0216 (7)0.0176 (6)0.0041 (6)0.0093 (6)−0.0005 (5)
C270.0224 (8)0.0246 (7)0.0131 (6)0.0036 (6)0.0083 (6)−0.0016 (5)
C280.0205 (8)0.0196 (6)0.0229 (7)0.0045 (6)0.0102 (6)0.0017 (5)
C290.0155 (7)0.0163 (6)0.0196 (6)0.0009 (5)0.0087 (6)0.0015 (5)
C300.0160 (8)0.0179 (6)0.0258 (7)0.0003 (5)0.0108 (6)0.0018 (5)
C310.0214 (8)0.0181 (6)0.0210 (6)−0.0016 (6)0.0074 (6)−0.0019 (5)
C320.0221 (8)0.0274 (7)0.0221 (7)0.0012 (6)0.0073 (6)0.0026 (6)
C330.0224 (8)0.0193 (6)0.0230 (7)0.0060 (6)0.0084 (6)0.0053 (5)
C340.0348 (9)0.0197 (7)0.0235 (7)−0.0012 (6)0.0154 (6)0.0027 (5)
C350.0206 (8)0.0233 (7)0.0264 (7)−0.0019 (6)0.0140 (6)0.0014 (5)
C360.0183 (8)0.0193 (6)0.0238 (6)−0.0002 (6)0.0094 (6)−0.0006 (5)
C370.0199 (8)0.0184 (6)0.0256 (7)0.0014 (6)0.0117 (6)0.0003 (5)
C380.0284 (9)0.0237 (7)0.0220 (7)0.0033 (6)0.0141 (6)0.0019 (5)
N1—C11.3629 (14)N21—C211.3685 (14)
N1—C71.3860 (14)N21—C271.3829 (15)
N1—C81.4664 (13)N21—C281.4661 (14)
N2—C11.3096 (14)N22—C211.3100 (15)
N2—C21.3931 (15)N22—C221.3929 (15)
C1—H10.9500C21—H210.9500
C2—C31.3972 (16)C22—C231.3915 (17)
C2—C71.3997 (16)C22—C271.4035 (16)
C3—C41.3744 (17)C23—C241.3738 (18)
C3—H30.9500C23—H230.9500
C4—C51.4000 (17)C24—C251.4029 (17)
C4—H40.9500C24—H240.9500
C5—C61.3805 (16)C25—C261.3784 (17)
C5—H50.9500C25—H250.9500
C6—C71.3889 (16)C26—C271.3908 (16)
C6—H60.9500C26—H260.9500
C8—C91.5294 (16)C28—C291.5329 (15)
C8—H8A0.9900C28—H28A0.9900
C8—H8B0.9900C28—H28B0.9900
C9—C101.5324 (15)C29—C361.5306 (16)
C9—C171.5331 (15)C29—C301.5340 (15)
C9—C161.5374 (15)C29—C371.5380 (15)
C10—C111.5257 (16)C30—C311.5299 (15)
C10—H10A0.9900C30—H30A0.9900
C10—H10B0.9900C30—H30B0.9900
C11—C121.5280 (16)C31—C381.5234 (17)
C11—C181.5281 (16)C31—C321.5337 (15)
C11—H111.0000C31—H311.0000
C12—C131.5304 (16)C32—C331.5292 (16)
C12—H12A0.9900C32—H32A0.9900
C12—H12B0.9900C32—H32B0.9900
C13—C171.5253 (16)C33—C341.5305 (17)
C13—C141.5308 (16)C33—C371.5310 (15)
C13—H131.0000C33—H331.0000
C14—C151.5308 (16)C34—C351.5273 (16)
C14—H14A0.9900C34—H34A0.9900
C14—H14B0.9900C34—H34B0.9900
C15—C161.5277 (16)C35—C361.5314 (16)
C15—C181.5285 (16)C35—C381.5331 (16)
C15—H151.0000C35—H351.0000
C16—H16A0.9900C36—H36A0.9900
C16—H16B0.9900C36—H36B0.9900
C17—H17A0.9900C37—H37A0.9900
C17—H17B0.9900C37—H37B0.9900
C18—H18A0.9900C38—H38A0.9900
C18—H18B0.9900C38—H38B0.9900
C1—N1—C7105.63 (10)C21—N21—C27105.78 (10)
C1—N1—C8126.55 (10)C21—N21—C28126.46 (11)
C7—N1—C8127.68 (10)C27—N21—C28127.76 (10)
C1—N2—C2103.80 (10)C21—N22—C22103.92 (10)
N2—C1—N1114.83 (11)N22—C21—N21114.59 (12)
N2—C1—H1122.6N22—C21—H21122.7
N1—C1—H1122.6N21—C21—H21122.7
N2—C2—C3129.95 (11)C23—C22—N22129.96 (11)
N2—C2—C7110.23 (10)C23—C22—C27119.75 (12)
C3—C2—C7119.79 (11)N22—C22—C27110.24 (11)
C4—C3—C2117.86 (12)C24—C23—C22118.07 (12)
C4—C3—H3121.1C24—C23—H23121.0
C2—C3—H3121.1C22—C23—H23121.0
C3—C4—C5121.46 (12)C23—C24—C25121.53 (12)
C3—C4—H4119.3C23—C24—H24119.2
C5—C4—H4119.3C25—C24—H24119.2
C6—C5—C4121.84 (12)C26—C25—C24121.56 (13)
C6—C5—H5119.1C26—C25—H25119.2
C4—C5—H5119.1C24—C25—H25119.2
C5—C6—C7116.30 (12)C25—C26—C27116.53 (12)
C5—C6—H6121.9C25—C26—H26121.7
C7—C6—H6121.9C27—C26—H26121.7
N1—C7—C6131.75 (11)N21—C27—C26131.96 (11)
N1—C7—C2105.50 (10)N21—C27—C22105.45 (11)
C6—C7—C2122.74 (11)C26—C27—C22122.55 (12)
N1—C8—C9114.51 (9)N21—C28—C29114.71 (9)
N1—C8—H8A108.6N21—C28—H28A108.6
C9—C8—H8A108.6C29—C28—H28A108.6
N1—C8—H8B108.6N21—C28—H28B108.6
C9—C8—H8B108.6C29—C28—H28B108.6
H8A—C8—H8B107.6H28A—C28—H28B107.6
C8—C9—C10111.79 (9)C36—C29—C28111.85 (9)
C8—C9—C17111.28 (9)C36—C29—C30108.90 (9)
C10—C9—C17108.93 (9)C28—C29—C30111.52 (9)
C8—C9—C16107.83 (9)C36—C29—C37108.67 (9)
C10—C9—C16108.64 (9)C28—C29—C37107.17 (9)
C17—C9—C16108.27 (9)C30—C29—C37108.62 (9)
C11—C10—C9110.46 (9)C31—C30—C29110.23 (9)
C11—C10—H10A109.6C31—C30—H30A109.6
C9—C10—H10A109.6C29—C30—H30A109.6
C11—C10—H10B109.6C31—C30—H30B109.6
C9—C10—H10B109.6C29—C30—H30B109.6
H10A—C10—H10B108.1H30A—C30—H30B108.1
C10—C11—C12108.99 (10)C38—C31—C30109.04 (9)
C10—C11—C18109.93 (10)C38—C31—C32109.70 (10)
C12—C11—C18109.12 (10)C30—C31—C32109.85 (10)
C10—C11—H11109.6C38—C31—H31109.4
C12—C11—H11109.6C30—C31—H31109.4
C18—C11—H11109.6C32—C31—H31109.4
C11—C12—C13109.63 (10)C33—C32—C31109.28 (10)
C11—C12—H12A109.7C33—C32—H32A109.8
C13—C12—H12A109.7C31—C32—H32A109.8
C11—C12—H12B109.7C33—C32—H32B109.8
C13—C12—H12B109.7C31—C32—H32B109.8
H12A—C12—H12B108.2H32A—C32—H32B108.3
C17—C13—C12109.70 (10)C32—C33—C34109.59 (10)
C17—C13—C14109.32 (10)C32—C33—C37108.97 (9)
C12—C13—C14109.46 (10)C34—C33—C37109.67 (10)
C17—C13—H13109.4C32—C33—H33109.5
C12—C13—H13109.4C34—C33—H33109.5
C14—C13—H13109.4C37—C33—H33109.5
C13—C14—C15109.23 (10)C35—C34—C33109.50 (10)
C13—C14—H14A109.8C35—C34—H34A109.8
C15—C14—H14A109.8C33—C34—H34A109.8
C13—C14—H14B109.8C35—C34—H34B109.8
C15—C14—H14B109.8C33—C34—H34B109.8
H14A—C14—H14B108.3H34A—C34—H34B108.2
C16—C15—C18109.12 (10)C34—C35—C36109.23 (10)
C16—C15—C14109.64 (10)C34—C35—C38109.44 (10)
C18—C15—C14109.32 (10)C36—C35—C38109.71 (9)
C16—C15—H15109.6C34—C35—H35109.5
C18—C15—H15109.6C36—C35—H35109.5
C14—C15—H15109.6C38—C35—H35109.5
C15—C16—C9110.55 (10)C29—C36—C35110.19 (10)
C15—C16—H16A109.5C29—C36—H36A109.6
C9—C16—H16A109.5C35—C36—H36A109.6
C15—C16—H16B109.5C29—C36—H36B109.6
C9—C16—H16B109.5C35—C36—H36B109.6
H16A—C16—H16B108.1H36A—C36—H36B108.1
C13—C17—C9110.37 (9)C33—C37—C29110.37 (9)
C13—C17—H17A109.6C33—C37—H37A109.6
C9—C17—H17A109.6C29—C37—H37A109.6
C13—C17—H17B109.6C33—C37—H37B109.6
C9—C17—H17B109.6C29—C37—H37B109.6
H17A—C17—H17B108.1H37A—C37—H37B108.1
C11—C18—C15109.76 (10)C31—C38—C35109.47 (10)
C11—C18—H18A109.7C31—C38—H38A109.8
C15—C18—H18A109.7C35—C38—H38A109.8
C11—C18—H18B109.7C31—C38—H38B109.8
C15—C18—H18B109.7C35—C38—H38B109.8
H18A—C18—H18B108.2H38A—C38—H38B108.2
Cg1 is the centroid of the C2–C7 ring.
D—H···AD—HH···AD···AD—H···A
C1—H1···Cg1i0.953.073.9197 (16)150.
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C2–C7 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1⋯Cg1i0.953.073.9197 (16)150

Symmetry code: (i) .

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