| Literature DB >> 21578229 |
Abstract
In the title mol-ecule, C(14)H(12)N(2), the benzimidazole ring system is essentially planar (r.m.s. deviation = 0.024 Å). The dihedral angle between the imidazole ring and the benzyl ring is 85.77 (4)°. In the crystal, mol-ecules are linked into chains along the a axis by C-H⋯N hydrogen bonds. In addition, the packing is stabilized by C-H⋯π inter-actions involving both six-membered rings.Entities:
Year: 2009 PMID: 21578229 PMCID: PMC2971400 DOI: 10.1107/S1600536809039051
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H12N2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 3307 reflections |
| θ = 3.2–27.5° | |
| µ = 0.08 mm−1 | |
| β = 97.839 (2)° | Block, colourless |
| 0.57 × 0.50 × 0.37 mm | |
| Rigaku SPIDER diffractometer | 2198 reflections with |
| Radiation source: Rotating Anode | |
| graphite | θmax = 27.5°, θmin = 3.2° |
| ω scans | |
| 8358 measured reflections | |
| 2412 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2412 reflections | (Δ/σ)max = 0.001 |
| 145 parameters | Δρmax = 0.21 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.41468 (13) | 0.11825 (10) | 0.58340 (4) | 0.0151 (2) | |
| N2 | 0.08985 (14) | 0.00680 (11) | 0.59213 (4) | 0.0184 (2) | |
| C2 | 0.21067 (16) | 0.08189 (12) | 0.55458 (5) | 0.0164 (2) | |
| H2 | 0.1602 | 0.1086 | 0.5110 | 0.020* | |
| C4 | 0.22460 (16) | −0.00841 (12) | 0.65071 (5) | 0.0164 (2) | |
| C5 | 0.18809 (18) | −0.08552 (13) | 0.70781 (5) | 0.0206 (2) | |
| H5 | 0.0516 | −0.1329 | 0.7122 | 0.025* | |
| C6 | 0.35775 (19) | −0.09021 (14) | 0.75762 (5) | 0.0234 (3) | |
| H6 | 0.3374 | −0.1434 | 0.7966 | 0.028* | |
| C7 | 0.55957 (19) | −0.01845 (14) | 0.75220 (5) | 0.0230 (3) | |
| H7 | 0.6720 | −0.0241 | 0.7876 | 0.028* | |
| C8 | 0.59841 (17) | 0.06012 (13) | 0.69652 (5) | 0.0190 (2) | |
| H8 | 0.7338 | 0.1103 | 0.6929 | 0.023* | |
| C9 | 0.42797 (16) | 0.06166 (12) | 0.64598 (5) | 0.0153 (2) | |
| C10 | 0.58686 (16) | 0.19667 (13) | 0.55403 (5) | 0.0163 (2) | |
| H10A | 0.5488 | 0.1927 | 0.5067 | 0.020* | |
| H10B | 0.7223 | 0.1334 | 0.5653 | 0.020* | |
| C11 | 0.62877 (16) | 0.37280 (13) | 0.57428 (5) | 0.0148 (2) | |
| C12 | 0.47606 (16) | 0.46721 (13) | 0.59998 (5) | 0.0175 (2) | |
| H12 | 0.3414 | 0.4201 | 0.6066 | 0.021* | |
| C13 | 0.51869 (18) | 0.63021 (13) | 0.61606 (5) | 0.0198 (2) | |
| H13 | 0.4138 | 0.6936 | 0.6339 | 0.024* | |
| C14 | 0.71437 (17) | 0.70020 (13) | 0.60598 (5) | 0.0187 (2) | |
| H14 | 0.7429 | 0.8119 | 0.6165 | 0.022* | |
| C15 | 0.86811 (17) | 0.60677 (13) | 0.58054 (5) | 0.0185 (2) | |
| H15 | 1.0023 | 0.6544 | 0.5738 | 0.022* | |
| C16 | 0.82598 (16) | 0.44380 (13) | 0.56497 (5) | 0.0171 (2) | |
| H16 | 0.9322 | 0.3801 | 0.5478 | 0.021* |
| N1 | 0.0142 (4) | 0.0141 (4) | 0.0168 (4) | −0.0009 (3) | 0.0017 (3) | −0.0012 (3) |
| N2 | 0.0160 (4) | 0.0162 (4) | 0.0226 (5) | −0.0005 (3) | 0.0016 (3) | 0.0004 (4) |
| C2 | 0.0155 (5) | 0.0136 (5) | 0.0195 (5) | 0.0007 (4) | −0.0002 (4) | −0.0013 (4) |
| C4 | 0.0162 (5) | 0.0131 (5) | 0.0201 (5) | 0.0014 (4) | 0.0030 (4) | −0.0028 (4) |
| C5 | 0.0211 (5) | 0.0181 (5) | 0.0239 (5) | −0.0002 (4) | 0.0084 (4) | −0.0008 (4) |
| C6 | 0.0305 (6) | 0.0229 (6) | 0.0178 (5) | 0.0026 (5) | 0.0074 (4) | 0.0005 (4) |
| C7 | 0.0256 (6) | 0.0248 (6) | 0.0176 (5) | 0.0029 (5) | −0.0006 (4) | −0.0033 (4) |
| C8 | 0.0171 (5) | 0.0193 (5) | 0.0205 (5) | −0.0003 (4) | 0.0015 (4) | −0.0040 (4) |
| C9 | 0.0174 (5) | 0.0119 (5) | 0.0172 (5) | 0.0017 (4) | 0.0037 (4) | −0.0028 (4) |
| C10 | 0.0140 (5) | 0.0167 (5) | 0.0188 (5) | −0.0008 (4) | 0.0043 (4) | −0.0016 (4) |
| C11 | 0.0154 (5) | 0.0159 (5) | 0.0129 (5) | 0.0001 (4) | 0.0009 (4) | 0.0012 (4) |
| C12 | 0.0143 (5) | 0.0187 (5) | 0.0201 (5) | −0.0008 (4) | 0.0039 (4) | 0.0000 (4) |
| C13 | 0.0198 (5) | 0.0173 (5) | 0.0227 (5) | 0.0031 (4) | 0.0048 (4) | −0.0009 (4) |
| C14 | 0.0223 (5) | 0.0143 (5) | 0.0189 (5) | −0.0009 (4) | 0.0010 (4) | 0.0005 (4) |
| C15 | 0.0165 (5) | 0.0198 (5) | 0.0192 (5) | −0.0036 (4) | 0.0027 (4) | 0.0019 (4) |
| C16 | 0.0154 (5) | 0.0196 (5) | 0.0170 (5) | 0.0009 (4) | 0.0044 (4) | −0.0001 (4) |
| N1—C2 | 1.3630 (13) | C8—H8 | 0.95 |
| N1—C9 | 1.3835 (13) | C10—C11 | 1.5137 (15) |
| N1—C10 | 1.4560 (13) | C10—H10A | 0.99 |
| N2—C2 | 1.3132 (14) | C10—H10B | 0.99 |
| N2—C4 | 1.3956 (13) | C11—C12 | 1.3892 (14) |
| C2—H2 | 0.95 | C11—C16 | 1.3958 (14) |
| C4—C5 | 1.3992 (15) | C12—C13 | 1.3910 (15) |
| C4—C9 | 1.4055 (14) | C12—H12 | 0.95 |
| C5—C6 | 1.3812 (16) | C13—C14 | 1.3881 (15) |
| C5—H5 | 0.95 | C13—H13 | 0.95 |
| C6—C7 | 1.4053 (17) | C14—C15 | 1.3870 (15) |
| C6—H6 | 0.95 | C14—H14 | 0.95 |
| C7—C8 | 1.3826 (16) | C15—C16 | 1.3881 (16) |
| C7—H7 | 0.95 | C15—H15 | 0.95 |
| C8—C9 | 1.3940 (14) | C16—H16 | 0.95 |
| C2—N1—C9 | 106.23 (9) | N1—C10—C11 | 114.12 (8) |
| C2—N1—C10 | 127.14 (9) | N1—C10—H10A | 108.7 |
| C9—N1—C10 | 126.61 (8) | C11—C10—H10A | 108.7 |
| C2—N2—C4 | 104.17 (9) | N1—C10—H10B | 108.7 |
| N2—C2—N1 | 114.29 (9) | C11—C10—H10B | 108.7 |
| N2—C2—H2 | 122.9 | H10A—C10—H10B | 107.6 |
| N1—C2—H2 | 122.9 | C12—C11—C16 | 119.02 (10) |
| N2—C4—C5 | 130.19 (10) | C12—C11—C10 | 122.43 (9) |
| N2—C4—C9 | 109.93 (9) | C16—C11—C10 | 118.52 (9) |
| C5—C4—C9 | 119.80 (10) | C11—C12—C13 | 120.53 (10) |
| C6—C5—C4 | 117.59 (10) | C11—C12—H12 | 119.7 |
| C6—C5—H5 | 121.2 | C13—C12—H12 | 119.7 |
| C4—C5—H5 | 121.2 | C14—C13—C12 | 120.02 (10) |
| C5—C6—C7 | 121.82 (10) | C14—C13—H13 | 120.0 |
| C5—C6—H6 | 119.1 | C12—C13—H13 | 120.0 |
| C7—C6—H6 | 119.1 | C15—C14—C13 | 119.86 (10) |
| C8—C7—C6 | 121.57 (10) | C15—C14—H14 | 120.1 |
| C8—C7—H7 | 119.2 | C13—C14—H14 | 120.1 |
| C6—C7—H7 | 119.2 | C14—C15—C16 | 120.05 (10) |
| C7—C8—C9 | 116.34 (10) | C14—C15—H15 | 120.0 |
| C7—C8—H8 | 121.8 | C16—C15—H15 | 120.0 |
| C9—C8—H8 | 121.8 | C15—C16—C11 | 120.51 (10) |
| N1—C9—C8 | 131.71 (10) | C15—C16—H16 | 119.7 |
| N1—C9—C4 | 105.38 (9) | C11—C16—H16 | 119.7 |
| C8—C9—C4 | 122.85 (10) | ||
| C4—N2—C2—N1 | −0.14 (12) | N2—C4—C9—N1 | −0.51 (11) |
| C9—N1—C2—N2 | −0.17 (12) | C5—C4—C9—N1 | 176.66 (9) |
| C10—N1—C2—N2 | 178.24 (9) | N2—C4—C9—C8 | −177.95 (9) |
| C2—N2—C4—C5 | −176.38 (11) | C5—C4—C9—C8 | −0.78 (15) |
| C2—N2—C4—C9 | 0.40 (11) | C2—N1—C10—C11 | 105.93 (11) |
| N2—C4—C5—C6 | 176.02 (10) | C9—N1—C10—C11 | −75.97 (12) |
| C9—C4—C5—C6 | −0.49 (15) | N1—C10—C11—C12 | −20.55 (13) |
| C4—C5—C6—C7 | 0.97 (16) | N1—C10—C11—C16 | 161.34 (9) |
| C5—C6—C7—C8 | −0.20 (17) | C16—C11—C12—C13 | 0.16 (15) |
| C6—C7—C8—C9 | −1.03 (16) | C10—C11—C12—C13 | −177.95 (10) |
| C2—N1—C9—C8 | 177.52 (11) | C11—C12—C13—C14 | 0.52 (16) |
| C10—N1—C9—C8 | −0.91 (17) | C12—C13—C14—C15 | −0.72 (16) |
| C2—N1—C9—C4 | 0.41 (11) | C13—C14—C15—C16 | 0.24 (16) |
| C10—N1—C9—C4 | −178.02 (9) | C14—C15—C16—C11 | 0.45 (15) |
| C7—C8—C9—N1 | −175.17 (10) | C12—C11—C16—C15 | −0.64 (15) |
| C7—C8—C9—C4 | 1.52 (15) | C10—C11—C16—C15 | 177.54 (9) |
| H··· | ||||
| C10—H10B···N2i | 0.99 | 2.50 | 3.4890 (14) | 173 |
| C7—H7···Cg1ii | 0.95 | 2.66 | 3.5220 (1) | 151 |
| C13—H13···Cg2iii | 0.95 | 2.80 | 3.5660 (3) | 139 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C10—H10 | 0.99 | 2.50 | 3.4890 (14) | 173 |
| C7—H7⋯ | 0.95 | 2.66 | 3.5220 (1) | 151 |
| C13—H13⋯ | 0.95 | 2.80 | 3.5660 (3) | 139 |
Symmetry codes: (i) ; (ii) ; (iii) . Cg1 and Cg2 are the centroids of the C11–C16 and C4–C9 rings, respectively.