Literature DB >> 21578229

1-Benzyl-1H-benzimidazole.

Gang Lei1, Li Zhou.   

Abstract

In the title mol-ecule, C(14)H(12)N(2), the benzimidazole ring system is essentially planar (r.m.s. deviation = 0.024 Å). The dihedral angle between the imidazole ring and the benzyl ring is 85.77 (4)°. In the crystal, mol-ecules are linked into chains along the a axis by C-H⋯N hydrogen bonds. In addition, the packing is stabilized by C-H⋯π inter-actions involving both six-membered rings.

Entities:  

Year:  2009        PMID: 21578229      PMCID: PMC2971400          DOI: 10.1107/S1600536809039051

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to benzimidazole derivatives, see: Ansari & Lal (2009 ▶). For the synthesis, see: Hayat et al. (2001 ▶).

Experimental

Crystal data

C14H12N2 M = 208.26 Monoclinic, a = 6.2265 (10) Å b = 8.1740 (13) Å c = 20.975 (4) Å β = 97.839 (2)° V = 1057.5 (3) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 93 K 0.57 × 0.50 × 0.37 mm

Data collection

Rigaku SPIDER diffractometer Absorption correction: none 8358 measured reflections 2412 independent reflections 2198 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.093 S = 1.00 2412 reflections 145 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.25 e Å−3 Data collection: RAPID-AUTO (Rigaku, 2004 ▶); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809039051/ci2926sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809039051/ci2926Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H12N2F(000) = 440
Mr = 208.26Dx = 1.308 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3307 reflections
a = 6.2265 (10) Åθ = 3.2–27.5°
b = 8.1740 (13) ŵ = 0.08 mm1
c = 20.975 (4) ÅT = 93 K
β = 97.839 (2)°Block, colourless
V = 1057.5 (3) Å30.57 × 0.50 × 0.37 mm
Z = 4
Rigaku SPIDER diffractometer2198 reflections with I > 2σ(I)
Radiation source: Rotating AnodeRint = 0.022
graphiteθmax = 27.5°, θmin = 3.2°
ω scansh = −8→8
8358 measured reflectionsk = −10→10
2412 independent reflectionsl = −27→27
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0482P)2 + 0.296P] where P = (Fo2 + 2Fc2)/3
2412 reflections(Δ/σ)max = 0.001
145 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.41468 (13)0.11825 (10)0.58340 (4)0.0151 (2)
N20.08985 (14)0.00680 (11)0.59213 (4)0.0184 (2)
C20.21067 (16)0.08189 (12)0.55458 (5)0.0164 (2)
H20.16020.10860.51100.020*
C40.22460 (16)−0.00841 (12)0.65071 (5)0.0164 (2)
C50.18809 (18)−0.08552 (13)0.70781 (5)0.0206 (2)
H50.0516−0.13290.71220.025*
C60.35775 (19)−0.09021 (14)0.75762 (5)0.0234 (3)
H60.3374−0.14340.79660.028*
C70.55957 (19)−0.01845 (14)0.75220 (5)0.0230 (3)
H70.6720−0.02410.78760.028*
C80.59841 (17)0.06012 (13)0.69652 (5)0.0190 (2)
H80.73380.11030.69290.023*
C90.42797 (16)0.06166 (12)0.64598 (5)0.0153 (2)
C100.58686 (16)0.19667 (13)0.55403 (5)0.0163 (2)
H10A0.54880.19270.50670.020*
H10B0.72230.13340.56530.020*
C110.62877 (16)0.37280 (13)0.57428 (5)0.0148 (2)
C120.47606 (16)0.46721 (13)0.59998 (5)0.0175 (2)
H120.34140.42010.60660.021*
C130.51869 (18)0.63021 (13)0.61606 (5)0.0198 (2)
H130.41380.69360.63390.024*
C140.71437 (17)0.70020 (13)0.60598 (5)0.0187 (2)
H140.74290.81190.61650.022*
C150.86811 (17)0.60677 (13)0.58054 (5)0.0185 (2)
H151.00230.65440.57380.022*
C160.82598 (16)0.44380 (13)0.56497 (5)0.0171 (2)
H160.93220.38010.54780.021*
U11U22U33U12U13U23
N10.0142 (4)0.0141 (4)0.0168 (4)−0.0009 (3)0.0017 (3)−0.0012 (3)
N20.0160 (4)0.0162 (4)0.0226 (5)−0.0005 (3)0.0016 (3)0.0004 (4)
C20.0155 (5)0.0136 (5)0.0195 (5)0.0007 (4)−0.0002 (4)−0.0013 (4)
C40.0162 (5)0.0131 (5)0.0201 (5)0.0014 (4)0.0030 (4)−0.0028 (4)
C50.0211 (5)0.0181 (5)0.0239 (5)−0.0002 (4)0.0084 (4)−0.0008 (4)
C60.0305 (6)0.0229 (6)0.0178 (5)0.0026 (5)0.0074 (4)0.0005 (4)
C70.0256 (6)0.0248 (6)0.0176 (5)0.0029 (5)−0.0006 (4)−0.0033 (4)
C80.0171 (5)0.0193 (5)0.0205 (5)−0.0003 (4)0.0015 (4)−0.0040 (4)
C90.0174 (5)0.0119 (5)0.0172 (5)0.0017 (4)0.0037 (4)−0.0028 (4)
C100.0140 (5)0.0167 (5)0.0188 (5)−0.0008 (4)0.0043 (4)−0.0016 (4)
C110.0154 (5)0.0159 (5)0.0129 (5)0.0001 (4)0.0009 (4)0.0012 (4)
C120.0143 (5)0.0187 (5)0.0201 (5)−0.0008 (4)0.0039 (4)0.0000 (4)
C130.0198 (5)0.0173 (5)0.0227 (5)0.0031 (4)0.0048 (4)−0.0009 (4)
C140.0223 (5)0.0143 (5)0.0189 (5)−0.0009 (4)0.0010 (4)0.0005 (4)
C150.0165 (5)0.0198 (5)0.0192 (5)−0.0036 (4)0.0027 (4)0.0019 (4)
C160.0154 (5)0.0196 (5)0.0170 (5)0.0009 (4)0.0044 (4)−0.0001 (4)
N1—C21.3630 (13)C8—H80.95
N1—C91.3835 (13)C10—C111.5137 (15)
N1—C101.4560 (13)C10—H10A0.99
N2—C21.3132 (14)C10—H10B0.99
N2—C41.3956 (13)C11—C121.3892 (14)
C2—H20.95C11—C161.3958 (14)
C4—C51.3992 (15)C12—C131.3910 (15)
C4—C91.4055 (14)C12—H120.95
C5—C61.3812 (16)C13—C141.3881 (15)
C5—H50.95C13—H130.95
C6—C71.4053 (17)C14—C151.3870 (15)
C6—H60.95C14—H140.95
C7—C81.3826 (16)C15—C161.3881 (16)
C7—H70.95C15—H150.95
C8—C91.3940 (14)C16—H160.95
C2—N1—C9106.23 (9)N1—C10—C11114.12 (8)
C2—N1—C10127.14 (9)N1—C10—H10A108.7
C9—N1—C10126.61 (8)C11—C10—H10A108.7
C2—N2—C4104.17 (9)N1—C10—H10B108.7
N2—C2—N1114.29 (9)C11—C10—H10B108.7
N2—C2—H2122.9H10A—C10—H10B107.6
N1—C2—H2122.9C12—C11—C16119.02 (10)
N2—C4—C5130.19 (10)C12—C11—C10122.43 (9)
N2—C4—C9109.93 (9)C16—C11—C10118.52 (9)
C5—C4—C9119.80 (10)C11—C12—C13120.53 (10)
C6—C5—C4117.59 (10)C11—C12—H12119.7
C6—C5—H5121.2C13—C12—H12119.7
C4—C5—H5121.2C14—C13—C12120.02 (10)
C5—C6—C7121.82 (10)C14—C13—H13120.0
C5—C6—H6119.1C12—C13—H13120.0
C7—C6—H6119.1C15—C14—C13119.86 (10)
C8—C7—C6121.57 (10)C15—C14—H14120.1
C8—C7—H7119.2C13—C14—H14120.1
C6—C7—H7119.2C14—C15—C16120.05 (10)
C7—C8—C9116.34 (10)C14—C15—H15120.0
C7—C8—H8121.8C16—C15—H15120.0
C9—C8—H8121.8C15—C16—C11120.51 (10)
N1—C9—C8131.71 (10)C15—C16—H16119.7
N1—C9—C4105.38 (9)C11—C16—H16119.7
C8—C9—C4122.85 (10)
C4—N2—C2—N1−0.14 (12)N2—C4—C9—N1−0.51 (11)
C9—N1—C2—N2−0.17 (12)C5—C4—C9—N1176.66 (9)
C10—N1—C2—N2178.24 (9)N2—C4—C9—C8−177.95 (9)
C2—N2—C4—C5−176.38 (11)C5—C4—C9—C8−0.78 (15)
C2—N2—C4—C90.40 (11)C2—N1—C10—C11105.93 (11)
N2—C4—C5—C6176.02 (10)C9—N1—C10—C11−75.97 (12)
C9—C4—C5—C6−0.49 (15)N1—C10—C11—C12−20.55 (13)
C4—C5—C6—C70.97 (16)N1—C10—C11—C16161.34 (9)
C5—C6—C7—C8−0.20 (17)C16—C11—C12—C130.16 (15)
C6—C7—C8—C9−1.03 (16)C10—C11—C12—C13−177.95 (10)
C2—N1—C9—C8177.52 (11)C11—C12—C13—C140.52 (16)
C10—N1—C9—C8−0.91 (17)C12—C13—C14—C15−0.72 (16)
C2—N1—C9—C40.41 (11)C13—C14—C15—C160.24 (16)
C10—N1—C9—C4−178.02 (9)C14—C15—C16—C110.45 (15)
C7—C8—C9—N1−175.17 (10)C12—C11—C16—C15−0.64 (15)
C7—C8—C9—C41.52 (15)C10—C11—C16—C15177.54 (9)
D—H···AD—HH···AD···AD—H···A
C10—H10B···N2i0.992.503.4890 (14)173
C7—H7···Cg1ii0.952.663.5220 (1)151
C13—H13···Cg2iii0.952.803.5660 (3)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10B⋯N2i0.992.503.4890 (14)173
C7—H7⋯Cg1ii0.952.663.5220 (1)151
C13—H13⋯Cg2iii0.952.803.5660 (3)139

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 and Cg2 are the centroids of the C11–C16 and C4–C9 rings, respectively.

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