Literature DB >> 22219871

(1S,2R,3R,8R,10S)-3-Chloro-2,8-dihy-droxy-3,7-dimethyl-11-methyl-idene-13-oxabicyclo-[8.3.0]tridec-6-en-12-one.

Mohamed Moumou, Ahmed Benharref, Jean-Claude Daran, Ahmed Elhakmaoui, Mohamed Akssira, Moha Berraho.   

Abstract

The title compound, C(15)H(21)ClO(4), was synthesized from 9α-hy-droxy-parthenolide (9α-hy-droxy-4,8-dimethyl-12-methylen-3,14-dioxatricyclo-[9.3.0.0(2,4)]tetra-dec-7-en-13-one), which was isolated from the chloro-form extract of the aerial parts of Anvillea radiata. The mol-ecule is built up from fused five- and ten-membered rings. The five-membered lactone ring has an envelope conformation with the flap atom, C(H)-C-C(H), displaced by 0.2325 (15) Å from the mean plane through the remaining four atoms, whereas the ten-membered ring displays an approximate chair-chair conformation. The dihedral angle between the two rings is 66.4 (2)°. In the crystal, mol-ecules are linked into chains propagating along the a axis by O-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 22219871      PMCID: PMC3247566          DOI: 10.1107/S1600536811039717

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isolation and biological activity of 9α-hy­droxy­parthenolide, see: El Hassany et al. (2004 ▶). For the reactivity of this sesquiterpene, see: Castaneda-Acosta et al. (1993 ▶); Neukirch et al. (2003 ▶); Hwang et al. (2006 ▶); Neelakantan et al. (2009 ▶). For conformational analysis, see: Cremer & Pople (1975 ▶)

Experimental

Crystal data

C15H21ClO4 M = 300.77 Orthorhombic, a = 8.0224 (2) Å b = 12.1532 (2) Å c = 15.4147 (4) Å V = 1502.90 (6) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 180 K 0.35 × 0.27 × 0.17 mm

Data collection

Agilent Xcalibur Eos Gemini ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.889, T max = 1.000 8982 measured reflections 3053 independent reflections 2944 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.070 S = 1.04 3053 reflections 185 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack (1983 ▶), 614 Friedel pairs Flack parameter: −0.06 (5) Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811039717/im2319sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811039717/im2319Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811039717/im2319Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H21ClO4F(000) = 640
Mr = 300.77Dx = 1.329 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 8982 reflections
a = 8.0224 (2) Åθ = 3.6–26.4°
b = 12.1532 (2) ŵ = 0.26 mm1
c = 15.4147 (4) ÅT = 180 K
V = 1502.90 (6) Å3Prism, colourless
Z = 40.35 × 0.27 × 0.17 mm
Agilent Xcalibur Eos Gemini ultra diffractometer3053 independent reflections
Radiation source: Enhance (Mo) X-ray Source2944 reflections with I > 2σ(I)
graphiteRint = 0.019
Detector resolution: 16.1978 pixels mm-1θmax = 26.4°, θmin = 3.6°
ω scansh = −10→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −15→15
Tmin = 0.889, Tmax = 1.000l = −18→19
8982 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027H-atom parameters constrained
wR(F2) = 0.070w = 1/[σ2(Fo2) + (0.0362P)2 + 0.3492P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
3053 reflectionsΔρmax = 0.21 e Å3
185 parametersΔρmin = −0.21 e Å3
0 restraintsAbsolute structure: Flack (1983), 614 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.06 (5)
Experimental. Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. CrysAlisPro (Agilent, 2010)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl0.47204 (6)0.42068 (3)0.58743 (3)0.03475 (11)
C10.60869 (16)0.59828 (11)0.36912 (9)0.0169 (3)
H10.67250.53790.34320.020*
C20.55399 (17)0.56590 (10)0.46192 (9)0.0169 (3)
H20.64650.58330.50110.020*
C30.51598 (18)0.44248 (11)0.47165 (9)0.0193 (3)
C40.66321 (18)0.36766 (11)0.44947 (11)0.0226 (3)
H4A0.67740.36910.38700.027*
H4B0.63220.29310.46510.027*
C50.83398 (18)0.39143 (12)0.49062 (11)0.0271 (3)
H5A0.82080.39350.55320.033*
H5B0.90850.33100.47700.033*
C60.91472 (16)0.49718 (12)0.46184 (10)0.0211 (3)
H60.92890.55190.50340.025*
C70.96724 (17)0.51863 (11)0.38212 (10)0.0201 (3)
C81.01946 (18)0.63373 (12)0.35599 (10)0.0213 (3)
H81.11060.62810.31390.026*
C90.87577 (18)0.69698 (12)0.31401 (10)0.0231 (3)
H9A0.84840.66190.25930.028*
H9B0.91350.77110.30120.028*
C100.71583 (16)0.70436 (11)0.36933 (10)0.0181 (3)
H100.74580.72300.42920.022*
C110.59596 (18)0.78895 (13)0.33507 (10)0.0228 (3)
C120.44945 (19)0.73049 (13)0.29884 (11)0.0264 (3)
C130.6075 (2)0.89766 (13)0.33538 (12)0.0329 (4)
H13A0.52170.94010.31230.039*
H13B0.70130.93160.35870.039*
C140.9722 (2)0.43627 (13)0.30957 (11)0.0296 (3)
H14A0.95790.36360.33270.044*
H14B1.07770.44090.28040.044*
H14C0.88420.45170.26920.044*
C150.36070 (18)0.40750 (12)0.42250 (11)0.0267 (3)
H15A0.37590.42150.36170.040*
H15B0.26660.44850.44330.040*
H15C0.34150.33040.43140.040*
O10.33335 (15)0.76689 (11)0.25906 (9)0.0408 (3)
O20.46321 (13)0.62157 (8)0.31574 (7)0.0235 (2)
O30.41528 (12)0.63183 (8)0.48730 (7)0.0219 (2)
H30.44830.68440.51590.033*
O41.07598 (12)0.69787 (8)0.42835 (8)0.0261 (2)
H41.16460.67300.44610.039*
U11U22U33U12U13U23
Cl0.0427 (2)0.03388 (19)0.0276 (2)0.00420 (18)0.00966 (18)0.00940 (16)
C10.0124 (6)0.0175 (6)0.0206 (7)0.0001 (5)−0.0032 (5)0.0002 (5)
C20.0130 (6)0.0169 (6)0.0208 (7)0.0019 (5)0.0001 (5)−0.0004 (5)
C30.0188 (7)0.0195 (6)0.0195 (7)0.0008 (5)0.0027 (6)0.0042 (5)
C40.0204 (7)0.0152 (6)0.0322 (8)0.0012 (5)0.0019 (6)0.0009 (6)
C50.0201 (7)0.0237 (8)0.0374 (9)0.0051 (6)−0.0026 (7)0.0084 (6)
C60.0134 (6)0.0208 (6)0.0290 (8)0.0032 (5)−0.0038 (6)−0.0013 (6)
C70.0109 (6)0.0205 (6)0.0289 (8)0.0014 (5)−0.0007 (6)−0.0065 (6)
C80.0150 (7)0.0231 (7)0.0257 (7)−0.0018 (5)0.0029 (6)−0.0057 (6)
C90.0200 (7)0.0253 (7)0.0240 (8)−0.0045 (6)0.0034 (6)0.0022 (6)
C100.0155 (6)0.0179 (6)0.0208 (7)−0.0011 (5)−0.0002 (6)0.0018 (6)
C110.0201 (7)0.0255 (7)0.0228 (8)0.0007 (6)0.0026 (6)0.0061 (6)
C120.0217 (7)0.0308 (8)0.0267 (8)−0.0005 (6)0.0007 (7)0.0100 (6)
C130.0331 (9)0.0247 (8)0.0408 (10)0.0031 (7)0.0023 (8)0.0073 (7)
C140.0240 (8)0.0288 (8)0.0361 (9)−0.0018 (6)0.0042 (7)−0.0135 (7)
C150.0191 (7)0.0201 (7)0.0410 (9)−0.0039 (6)−0.0041 (7)0.0039 (7)
O10.0255 (6)0.0461 (7)0.0507 (8)0.0016 (5)−0.0121 (6)0.0243 (6)
O20.0193 (5)0.0256 (5)0.0255 (5)−0.0039 (4)−0.0078 (5)0.0052 (4)
O30.0156 (5)0.0193 (5)0.0308 (6)0.0022 (4)0.0021 (4)−0.0050 (4)
O40.0169 (5)0.0233 (5)0.0380 (7)0.0005 (4)−0.0052 (4)−0.0100 (5)
Cl—C31.8384 (15)C8—C91.529 (2)
C1—O21.4557 (16)C8—H80.9800
C1—C21.5471 (19)C9—C101.5433 (19)
C1—C101.5495 (18)C9—H9A0.9700
C1—H10.9800C9—H9B0.9700
C2—O31.4260 (16)C10—C111.504 (2)
C2—C31.5380 (18)C10—H100.9800
C2—H20.9800C11—C131.324 (2)
C3—C151.519 (2)C11—C121.483 (2)
C3—C41.5292 (19)C12—O11.1997 (19)
C4—C51.537 (2)C12—O21.3536 (18)
C4—H4A0.9700C13—H13A0.9300
C4—H4B0.9700C13—H13B0.9300
C5—C61.506 (2)C14—H14A0.9600
C5—H5A0.9700C14—H14B0.9600
C5—H5B0.9700C14—H14C0.9600
C6—C71.325 (2)C15—H15A0.9600
C6—H60.9300C15—H15B0.9600
C7—C141.5014 (19)C15—H15C0.9600
C7—C81.5148 (19)O3—H30.8200
C8—O41.4343 (17)O4—H40.8200
O2—C1—C2110.16 (11)O4—C8—H8108.5
O2—C1—C10106.51 (10)C7—C8—H8108.5
C2—C1—C10111.53 (11)C9—C8—H8108.5
O2—C1—H1109.5C8—C9—C10114.96 (12)
C2—C1—H1109.5C8—C9—H9A108.5
C10—C1—H1109.5C10—C9—H9A108.5
O3—C2—C3111.50 (11)C8—C9—H9B108.5
O3—C2—C1109.40 (11)C10—C9—H9B108.5
C3—C2—C1113.23 (11)H9A—C9—H9B107.5
O3—C2—H2107.5C11—C10—C9112.17 (12)
C3—C2—H2107.5C11—C10—C1102.32 (11)
C1—C2—H2107.5C9—C10—C1114.31 (12)
C15—C3—C4110.83 (12)C11—C10—H10109.3
C15—C3—C2112.77 (11)C9—C10—H10109.3
C4—C3—C2113.89 (11)C1—C10—H10109.3
C15—C3—Cl106.66 (10)C13—C11—C12122.32 (15)
C4—C3—Cl106.23 (10)C13—C11—C10129.51 (15)
C2—C3—Cl105.86 (9)C12—C11—C10108.16 (13)
C3—C4—C5118.97 (12)O1—C12—O2121.48 (15)
C3—C4—H4A107.6O1—C12—C11129.15 (15)
C5—C4—H4A107.6O2—C12—C11109.36 (13)
C3—C4—H4B107.6C11—C13—H13A120.0
C5—C4—H4B107.6C11—C13—H13B120.0
H4A—C4—H4B107.0H13A—C13—H13B120.0
C6—C5—C4114.97 (12)C7—C14—H14A109.5
C6—C5—H5A108.5C7—C14—H14B109.5
C4—C5—H5A108.5H14A—C14—H14B109.5
C6—C5—H5B108.5C7—C14—H14C109.5
C4—C5—H5B108.5H14A—C14—H14C109.5
H5A—C5—H5B107.5H14B—C14—H14C109.5
C7—C6—C5125.30 (14)C3—C15—H15A109.5
C7—C6—H6117.3C3—C15—H15B109.5
C5—C6—H6117.3H15A—C15—H15B109.5
C6—C7—C14124.62 (13)C3—C15—H15C109.5
C6—C7—C8121.08 (13)H15A—C15—H15C109.5
C14—C7—C8114.22 (12)H15B—C15—H15C109.5
O4—C8—C7112.49 (12)C12—O2—C1111.36 (11)
O4—C8—C9107.12 (11)C2—O3—H3109.5
C7—C8—C9111.61 (12)C8—O4—H4109.5
D—H···AD—HH···AD···AD—H···A
O3—H3···O4i0.821.962.763 (1)167
O4—H4···O3ii0.822.172.980 (1)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O4i0.821.962.763 (1)167
O4—H4⋯O3ii0.822.172.980 (1)171

Symmetry codes: (i) ; (ii) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Parthenolide and its photochemically synthesized 1(10)Z isomer: chemical reactivity and structure-activity relationship studies in human leucocyte chemotaxis.

Authors:  Hannes Neukirch; Nicole C Kaneider; Christian J Wiedermann; Antonio Guerriero; Michele D'Ambrosio
Journal:  Bioorg Med Chem       Date:  2003-04-03       Impact factor: 3.641

3.  Synthesis and anti-viral activity of a series of sesquiterpene lactones and analogues in the subgenomic HCV replicon system.

Authors:  Der-Ren Hwang; Yu-Shan Wu; Chun-Wei Chang; Tzu-Wen Lien; Wei-Cheng Chen; Uan-Kang Tan; John T A Hsu; Hsing-Pang Hsieh
Journal:  Bioorg Med Chem       Date:  2005-09-02       Impact factor: 3.641

4.  Biomimetic transformations of parthenolide.

Authors:  J Castañeda-Acosta; N H Fischer; D Vargas
Journal:  J Nat Prod       Date:  1993-01       Impact factor: 4.050

5.  Germacranolides from Anvillea radiata.

Authors:  B El Hassany; F El Hanbali; M Akssira; F Mellouki; A Haidour; A F Barrero
Journal:  Fitoterapia       Date:  2004-09       Impact factor: 2.882

6.  Aminoparthenolides as novel anti-leukemic agents: Discovery of the NF-kappaB inhibitor, DMAPT (LC-1).

Authors:  Sundar Neelakantan; Shama Nasim; Monica L Guzman; Craig T Jordan; Peter A Crooks
Journal:  Bioorg Med Chem Lett       Date:  2009-05-27       Impact factor: 2.823

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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