Literature DB >> 22219781

(2-Carbamoylethyl-κC,O)triiodidotin(IV).

Geraldo M de Lima, Edward R T Tiekink, James L Wardell, Solange M S V Wardell.   

Abstract

Two independent but virtually identical mol-ecules comprise the asymmetric unit of the title compound, [Sn(C(3)H(6)NO)I(3)]. The CI(3)O coordination geometry around the Sn(IV) atom is defined by a chelating carbamoylethyl ligand (C(1),O-bidentate) and three I atoms, and is based on a distorted trigonal bipyramid with the carbonyl O atom occupying a position trans to one of the I atoms which forms the longer of the Sn-I bonds. The independent mol-ecules are linked via N-H⋯O hydrogen bonds, which leads to the formation on an eight-membered amide {⋯HNCO}(2) synthon. N-H⋯I hydrogen-bonding inter-actions are also present between neighbouring mol-ecules.

Entities:  

Year:  2011        PMID: 22219781      PMCID: PMC3246961          DOI: 10.1107/S1600536811041778

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to and for related Sn[OCH(NH2)CH2CH2]Cl3 L structures (L = amide), see: Howie et al. (2011a ▶,b ▶); Wardell et al. (2010 ▶); Tiekink et al. (2006 ▶). For additional geometric analysis, see: Addison et al. (1984 ▶); Spek (2009 ▶).

Experimental

Crystal data

[Sn(C3H6NO)I3] M = 571.48 Triclinic, a = 7.8530 (1) Å b = 10.6264 (1) Å c = 14.1250 (2) Å α = 98.801 (1)° β = 105.523 (1)° γ = 102.383 (1)° V = 1081.22 (2) Å3 Z = 4 Mo Kα radiation μ = 10.87 mm−1 T = 120 K 0.20 × 0.20 × 0.02 mm

Data collection

Bruker–Nonius APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.379, T max = 1.000 14061 measured reflections 4414 independent reflections 4342 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.079 S = 1.12 4414 reflections 163 parameters H-atom parameters constrained Δρmax = 1.37 e Å−3 Δρmin = −1.46 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811041778/wm2541sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811041778/wm2541Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Sn(C3H6NO)I3]Z = 4
Mr = 571.48F(000) = 992
Triclinic, P1Dx = 3.511 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.8530 (1) ÅCell parameters from 4411 reflections
b = 10.6264 (1) Åθ = 2.9–27.5°
c = 14.1250 (2) ŵ = 10.87 mm1
α = 98.801 (1)°T = 120 K
β = 105.523 (1)°Plate, yellow
γ = 102.383 (1)°0.20 × 0.20 × 0.02 mm
V = 1081.22 (2) Å3
Bruker–Nonius APEXII CCD diffractometer4414 independent reflections
Radiation source: Bruker-Nonius FR591 rotating anode4342 reflections with I > 2σ(I)
10cm confocal mirrorsRint = 0.039
Detector resolution: 9.091 pixels mm-1θmax = 26.5°, θmin = 3.0°
φ and ω scansh = −9→9
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −13→13
Tmin = 0.379, Tmax = 1.000l = −17→17
14061 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079H-atom parameters constrained
S = 1.12w = 1/[σ2(Fo2) + (0.0384P)2 + 3.8857P] where P = (Fo2 + 2Fc2)/3
4414 reflections(Δ/σ)max = 0.001
163 parametersΔρmax = 1.37 e Å3
0 restraintsΔρmin = −1.46 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Sn10.84744 (4)0.81052 (3)0.07941 (2)0.01343 (9)
I10.79233 (5)0.56511 (3)0.11465 (2)0.02019 (10)
I21.13298 (5)0.80096 (3)−0.00043 (3)0.02164 (10)
I30.58439 (4)0.79311 (3)−0.09302 (2)0.01808 (9)
O10.6302 (5)0.8274 (4)0.1636 (3)0.0196 (7)
N10.5852 (8)0.9523 (5)0.2928 (4)0.0324 (12)
H1N0.48490.88700.27620.039*
H2N0.65290.95680.35460.039*
C10.9830 (7)0.9848 (5)0.1974 (4)0.0190 (10)
H1A1.07070.96340.25330.023*
H1B1.05331.05280.17140.023*
C20.8454 (9)1.0397 (5)0.2370 (4)0.0266 (12)
H2A0.90521.08740.30830.032*
H2B0.80571.10370.19780.032*
C30.6791 (7)0.9313 (5)0.2296 (4)0.0198 (10)
Sn20.27996 (4)0.67003 (3)0.46025 (2)0.01266 (9)
I40.61233 (4)0.84602 (3)0.54333 (3)0.01904 (10)
I50.02318 (4)0.80393 (3)0.43118 (2)0.01823 (9)
I60.25104 (5)0.60910 (3)0.64270 (2)0.02072 (10)
O20.3235 (5)0.6994 (4)0.3074 (3)0.0208 (8)
N20.3498 (7)0.5858 (5)0.1668 (4)0.0286 (11)
H3N0.38560.66660.15850.034*
H4N0.44010.54800.17160.034*
C40.2650 (7)0.4737 (5)0.3869 (4)0.0171 (9)
H4A0.38350.45330.41400.021*
H4B0.16840.40900.40050.021*
C50.2215 (7)0.4620 (5)0.2734 (4)0.0213 (11)
H5A0.27080.39210.24490.026*
H5B0.08680.43580.24140.026*
C60.3029 (7)0.5905 (5)0.2496 (4)0.0188 (10)
U11U22U33U12U13U23
Sn10.01254 (17)0.01471 (17)0.01161 (16)0.00316 (13)0.00254 (13)0.00162 (12)
I10.02194 (19)0.01739 (17)0.02113 (18)0.00547 (14)0.00490 (14)0.00694 (13)
I20.01880 (18)0.02449 (18)0.02683 (19)0.00877 (14)0.01201 (14)0.00795 (14)
I30.01449 (17)0.02295 (18)0.01437 (17)0.00462 (13)0.00081 (13)0.00423 (13)
O10.0162 (18)0.0241 (18)0.0176 (17)0.0048 (14)0.0059 (14)0.0023 (14)
N10.044 (3)0.027 (2)0.032 (3)0.009 (2)0.025 (2)−0.001 (2)
C10.021 (3)0.013 (2)0.016 (2)−0.0025 (19)0.001 (2)−0.0023 (18)
C20.045 (4)0.016 (2)0.024 (3)0.010 (2)0.018 (3)0.003 (2)
C30.025 (3)0.026 (3)0.016 (2)0.014 (2)0.011 (2)0.008 (2)
Sn20.01234 (17)0.01365 (16)0.01193 (16)0.00425 (12)0.00339 (13)0.00231 (12)
I40.01251 (17)0.01815 (17)0.02403 (18)0.00266 (13)0.00420 (13)0.00230 (13)
I50.01529 (18)0.02042 (17)0.02122 (18)0.00887 (13)0.00530 (13)0.00606 (13)
I60.01956 (18)0.02811 (19)0.01277 (16)0.00340 (14)0.00347 (13)0.00657 (13)
O20.028 (2)0.0208 (18)0.0155 (17)0.0060 (15)0.0108 (15)0.0032 (14)
N20.035 (3)0.030 (3)0.022 (2)0.005 (2)0.015 (2)0.003 (2)
C40.022 (3)0.013 (2)0.013 (2)0.0072 (19)0.0009 (19)0.0001 (17)
C50.022 (3)0.021 (2)0.016 (2)0.002 (2)0.004 (2)−0.0031 (19)
C60.014 (2)0.029 (3)0.016 (2)0.009 (2)0.0047 (19)0.006 (2)
Sn1—C12.146 (5)Sn2—C42.147 (5)
Sn1—O12.347 (3)Sn2—O22.330 (3)
Sn1—I12.6953 (4)Sn2—I42.6987 (4)
Sn1—I22.7796 (4)Sn2—I52.6880 (4)
Sn1—I32.6904 (4)Sn2—I62.8060 (4)
O1—C31.244 (6)O2—C61.262 (6)
N1—C31.324 (7)N2—C61.313 (6)
N1—H1N0.8800N2—H3N0.8800
N1—H2N0.8800N2—H4N0.8800
C1—C21.521 (7)C4—C51.526 (7)
C1—H1A0.9900C4—H4A0.9900
C1—H1B0.9900C4—H4B0.9900
C2—C31.512 (8)C5—C61.506 (7)
C2—H2A0.9900C5—H5A0.9900
C2—H2B0.9900C5—H5B0.9900
C1—Sn1—O176.52 (16)C4—Sn2—O277.38 (16)
C1—Sn1—I3125.92 (14)C4—Sn2—I5129.25 (14)
O1—Sn1—I387.71 (9)O2—Sn2—I589.69 (9)
C1—Sn1—I1122.64 (14)C4—Sn2—I4118.64 (14)
O1—Sn1—I183.18 (9)O2—Sn2—I484.58 (9)
I3—Sn1—I1105.788 (15)I5—Sn2—I4108.400 (14)
C1—Sn1—I298.50 (14)C4—Sn2—I696.42 (13)
O1—Sn1—I2173.92 (9)O2—Sn2—I6172.63 (9)
I3—Sn1—I298.106 (14)I5—Sn2—I697.373 (13)
I1—Sn1—I296.853 (14)I4—Sn2—I695.120 (13)
C3—O1—Sn1112.5 (3)C6—O2—Sn2111.5 (3)
C3—N1—H1N109.5C6—N2—H3N109.5
C3—N1—H2N109.5C6—N2—H4N109.5
H1N—N1—H2N109.5H3N—N2—H4N109.5
C2—C1—Sn1111.0 (4)C5—C4—Sn2110.1 (3)
C2—C1—H1A109.4C5—C4—H4A109.6
Sn1—C1—H1A109.4Sn2—C4—H4A109.6
C2—C1—H1B109.4C5—C4—H4B109.6
Sn1—C1—H1B109.4Sn2—C4—H4B109.6
H1A—C1—H1B108.0H4A—C4—H4B108.1
C3—C2—C1111.7 (4)C6—C5—C4111.5 (4)
C3—C2—H2A109.3C6—C5—H5A109.3
C1—C2—H2A109.3C4—C5—H5A109.3
C3—C2—H2B109.3C6—C5—H5B109.3
C1—C2—H2B109.3C4—C5—H5B109.3
H2A—C2—H2B107.9H5A—C5—H5B108.0
O1—C3—N1121.5 (5)O2—C6—N2121.2 (5)
O1—C3—C2120.3 (4)O2—C6—C5120.6 (4)
N1—C3—C2118.2 (5)N2—C6—C5118.2 (5)
C1—Sn1—O1—C36.4 (4)C4—Sn2—O2—C65.8 (3)
I3—Sn1—O1—C3−121.4 (3)I5—Sn2—O2—C6−124.7 (3)
I1—Sn1—O1—C3132.4 (3)I4—Sn2—O2—C6126.8 (3)
O1—Sn1—C1—C2−19.9 (3)O2—Sn2—C4—C5−20.4 (3)
I3—Sn1—C1—C257.1 (4)I5—Sn2—C4—C558.6 (4)
I1—Sn1—C1—C2−92.5 (4)I4—Sn2—C4—C5−97.0 (3)
I2—Sn1—C1—C2163.6 (3)I6—Sn2—C4—C5163.6 (3)
Sn1—C1—C2—C331.0 (6)Sn2—C4—C5—C632.4 (5)
Sn1—O1—C3—N1−172.4 (4)Sn2—O2—C6—N2−169.0 (4)
Sn1—O1—C3—C29.8 (6)Sn2—O2—C6—C511.7 (6)
C1—C2—C3—O1−27.7 (7)C4—C5—C6—O2−30.2 (7)
C1—C2—C3—N1154.4 (5)C4—C5—C6—N2150.5 (5)
D—H···AD—HH···AD···AD—H···A
N1—H1n···O20.882.293.085 (7)150
N2—H3n···O10.882.263.018 (7)145
N2—H4n···I10.883.063.784 (6)141
Table 1

Selected bond lengths (Å)

Sn1—C12.146 (5)
Sn1—O12.347 (3)
Sn1—I12.6953 (4)
Sn1—I22.7796 (4)
Sn1—I32.6904 (4)
Sn2—C42.147 (5)
Sn2—O22.330 (3)
Sn2—I42.6987 (4)
Sn2—I52.6880 (4)
Sn2—I62.8060 (4)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1n⋯O20.882.293.085 (7)150
N2—H3n⋯O10.882.263.018 (7)145
N2—H4n⋯I10.883.063.784 (6)141
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  fac-(2-Amido-ethyl-κC,O)aqua-tri-chlorido-tin(IV) 1,4,7,10,13,16-hexa-oxacyclo-octa-decane (2/1).

Authors:  Solange M S V Wardell; William T A Harrison; Edward R T Tiekink; Geraldo M de Lima; James L Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-20

3.  fac-(2-Amido-ethyl-κC,O)trichlorido(urea-κO)tin(IV).

Authors:  R Alan Howie; Geraldo M de Lima; Edward R T Tiekink; James L Wardell; Solange M S V Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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