Literature DB >> 21580253

fac-(2-Amido-ethyl-κC,O)aqua-tri-chlorido-tin(IV) 1,4,7,10,13,16-hexa-oxacyclo-octa-decane (2/1).

Solange M S V Wardell, William T A Harrison, Edward R T Tiekink, Geraldo M de Lima, James L Wardell.   

Abstract

The asymmetric unit of the title compound, [Sn(C(n class="Chemical">3)H(6)NO)Cl(3)(H(2)O)](2)·C(12)H(24)O(6), comprises a six-coordinate tin complex and a 18-crown-6 mol-ecule, the latter disposed about a centre of inversion. The tin atom is coordinated by three Cl atoms, that define a facial arrangement, a chelating C-,O- ligand, and a water mol-ecule. The resulting CCl(3)O(2) donor set defines a distorted octa-hedral geometry. The tin-bound aqua ligand forms O-H⋯O hydrogen bonds to the centrosymmetric 18-crown-6 mol-ecule, resulting in a tri-mol-ecular aggregate. These assemble into a supra-molecular chain along the a axis being connected by N-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21580253      PMCID: PMC2983741          DOI: 10.1107/S1600536810005908

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to amido­ethyl tin compounds, see: Hutton & Oakes (1976 ▶). For the use of organon class="Chemical">tin compounds as PVC stabilisers, see: Lanigen & Weinberg (1976 ▶). For the crystal structures of amido­ethyl­tin compounds, see: Harrison et al. (1979 ▶); Tiekink et al. (2006 ▶). For the crystal structures of alkyl­oxycarbonyl­ethyl­tin compounds, see: de Lima et al. (2009 ▶); Milne et al. (2005 ▶). For a review on tincrown ether compounds, see: Cusack & Smith (1990 ▶). For related structures of organotin(IV) and tin(IV) halide complexes with crown ethers, see: Cusack et al. (1983 ▶); Amini et al. (1984 ▶, 2002 ▶); Russo et al. (1984 ▶); Valle et al. (1984 ▶, 1985 ▶); Rivarola et al. (1986 ▶); Bott et al. (1987 ▶); Mitra et al. (1993 ▶); Yap et al. (1996 ▶); Wolff et al. (2009 ▶).

Experimental

Crystal data

[Sn(C3H6NO)Cl3(H2O)]2·C12H24O6 M = 894.64 Monoclinic, a = 10.1260 (2) Å b = 10.0893 (3) Å c = 15.8229 (4) Å β = 105.814 (2)° V = 1555.35 (7) Å3 Z = 2 Mo Kα radiation μ = 2.17 mm−1 T = 120 K 0.20 × 0.18 × 0.02 mm

Data collection

Nonius KappaCCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.638, T max = 0.746 19526 measured reflections 3555 independent reflections 2981 reflections with I > 2σ(I) R int = 0.062

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.090 S = 1.12 3555 reflections 184 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.81 e Å−3 Δρmin = −1.31 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DEn class="Chemical">NZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks general, I. DOI: 10.1107/S1600536810005908/lh2997sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810005908/lh2997Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Sn(C3H6NO)Cl3(H2O)]2·C12H24O6F(000) = 888
Mr = 894.64Dx = 1.910 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 9442 reflections
a = 10.1260 (2) Åθ = 2.9–27.5°
b = 10.0893 (3) ŵ = 2.17 mm1
c = 15.8229 (4) ÅT = 120 K
β = 105.814 (2)°Prism, colourless
V = 1555.35 (7) Å30.20 × 0.18 × 0.02 mm
Z = 2
Nonius KappaCCD area-detector diffractometer3555 independent reflections
Radiation source: Enraf Nonius FR591 rotating anode2981 reflections with I > 2σ(I)
10 cm confocal mirrorsRint = 0.062
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 3.0°
φ and ω scansh = −13→12
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −13→13
Tmin = 0.638, Tmax = 0.746l = −20→20
19526 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H atoms treated by a mixture of independent and constrained refinement
S = 1.12w = 1/[σ2(Fo2) + (0.0486P)2] where P = (Fo2 + 2Fc2)/3
3555 reflections(Δ/σ)max = 0.002
184 parametersΔρmax = 0.81 e Å3
6 restraintsΔρmin = −1.31 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Sn0.78251 (2)0.23444 (2)0.571426 (15)0.01204 (10)
Cl10.77631 (9)0.37992 (9)0.68869 (6)0.0199 (2)
Cl20.64299 (9)0.07335 (9)0.62109 (6)0.0231 (2)
Cl30.99961 (8)0.13617 (9)0.65225 (6)0.0200 (2)
O10.5890 (2)0.3331 (2)0.49675 (15)0.0146 (5)
O1W0.8950 (2)0.4054 (2)0.53264 (16)0.0139 (5)
H1W0.859 (3)0.436 (4)0.4824 (12)0.021*
H2W0.922 (4)0.471 (2)0.565 (2)0.021*
N10.4259 (3)0.3257 (3)0.3687 (2)0.0217 (7)
H1N0.377 (3)0.386 (3)0.387 (2)0.033*
H2N0.396 (4)0.290 (4)0.3164 (14)0.033*
C10.7646 (3)0.1561 (3)0.4426 (2)0.0155 (7)
H1A0.82720.20380.41480.019*
H1B0.78940.06100.44650.019*
C20.6165 (3)0.1739 (4)0.3884 (2)0.0191 (8)
H2A0.61540.19250.32670.023*
H2B0.56630.08990.38900.023*
C30.5422 (3)0.2844 (3)0.4209 (2)0.0157 (7)
O21.0228 (2)0.6214 (2)0.63876 (15)0.0146 (5)
O30.7765 (2)0.6756 (2)0.51861 (15)0.0146 (5)
O40.7319 (2)0.4951 (2)0.37156 (15)0.0140 (5)
C40.9395 (4)0.7297 (3)0.6529 (3)0.0172 (8)
H4A0.99850.80110.68610.021*
H4B0.87740.69930.68770.021*
C50.8571 (4)0.7812 (3)0.5659 (3)0.0175 (8)
H5A0.79670.85410.57450.021*
H5B0.91900.81610.53230.021*
C60.7026 (3)0.7148 (4)0.4323 (2)0.0165 (7)
H6A0.76590.75370.40120.020*
H6B0.63260.78200.43490.020*
C70.6351 (3)0.5932 (3)0.3852 (2)0.0156 (7)
H7A0.57720.55250.41950.019*
H7B0.57410.61960.32740.019*
C81.1285 (3)0.5885 (3)0.7162 (2)0.0148 (7)
H8A1.08760.56760.76480.018*
H8B1.19170.66460.73420.018*
C90.7943 (3)0.5295 (3)0.3033 (2)0.0149 (7)
H9A0.85780.60500.32230.018*
H9B0.72270.55620.24980.018*
U11U22U33U12U13U23
Sn0.01329 (15)0.01173 (14)0.01132 (15)−0.00019 (8)0.00373 (10)0.00053 (9)
Cl10.0273 (5)0.0190 (5)0.0138 (5)0.0020 (4)0.0062 (4)−0.0027 (3)
Cl20.0223 (4)0.0194 (5)0.0303 (5)−0.0025 (4)0.0118 (4)0.0071 (4)
Cl30.0157 (4)0.0195 (5)0.0227 (5)0.0027 (3)0.0018 (4)0.0049 (4)
O10.0164 (12)0.0174 (13)0.0101 (12)0.0007 (10)0.0036 (10)−0.0028 (10)
O1W0.0189 (12)0.0094 (12)0.0121 (13)0.0002 (10)0.0023 (10)0.0026 (10)
N10.0165 (15)0.0297 (19)0.0176 (17)0.0027 (14)0.0023 (13)−0.0074 (14)
C10.0176 (17)0.0149 (18)0.0152 (18)0.0015 (14)0.0062 (14)−0.0013 (14)
C20.0167 (18)0.024 (2)0.017 (2)−0.0039 (15)0.0054 (15)−0.0063 (16)
C30.0115 (16)0.0186 (18)0.0194 (19)−0.0020 (14)0.0084 (14)0.0025 (15)
O20.0135 (11)0.0160 (12)0.0129 (13)0.0015 (9)0.0011 (9)−0.0024 (9)
O30.0142 (12)0.0128 (12)0.0154 (13)0.0005 (10)0.0017 (10)−0.0002 (10)
O40.0149 (11)0.0138 (12)0.0135 (12)0.0011 (9)0.0044 (9)0.0023 (9)
C40.0170 (18)0.0160 (18)0.0194 (19)−0.0013 (14)0.0060 (15)−0.0088 (14)
C50.0166 (18)0.0110 (17)0.025 (2)−0.0019 (14)0.0050 (15)−0.0037 (15)
C60.0166 (18)0.0162 (18)0.017 (2)0.0029 (14)0.0051 (15)0.0022 (14)
C70.0129 (16)0.0199 (18)0.0147 (18)0.0032 (14)0.0052 (14)0.0029 (14)
C80.0176 (17)0.0154 (17)0.0110 (17)0.0003 (14)0.0029 (14)−0.0008 (14)
C90.0155 (17)0.0174 (18)0.0128 (18)−0.0002 (14)0.0058 (14)0.0035 (14)
Sn—C12.147 (3)O3—C61.423 (4)
Sn—O12.228 (2)O3—C51.424 (4)
Sn—O1W2.243 (2)O4—C91.434 (4)
Sn—Cl12.3800 (9)O4—C71.450 (4)
Sn—Cl22.4208 (9)C4—C51.496 (5)
Sn—Cl32.4329 (9)C4—H4A0.9900
O1—C31.263 (4)C4—H4B0.9900
O1W—H1W0.84 (2)C5—H5A0.9900
O1W—H2W0.84 (3)C5—H5B0.9900
N1—C31.309 (5)C6—C71.500 (5)
N1—H1N0.88 (3)C6—H6A0.9900
N1—H2N0.88 (3)C6—H6B0.9900
C1—C21.522 (5)C7—H7A0.9900
C1—H1A0.9900C7—H7B0.9900
C1—H1B0.9900C8—C9i1.502 (5)
C2—C31.512 (5)C8—H8A0.9900
C2—H2A0.9900C8—H8B0.9900
C2—H2B0.9900C9—C8i1.502 (5)
O2—C81.429 (4)C9—H9A0.9900
O2—C41.435 (4)C9—H9B0.9900
C1—Sn—O180.00 (11)C6—O3—C5111.8 (3)
C1—Sn—O1W86.63 (11)C9—O4—C7113.6 (2)
O1—Sn—O1W87.14 (8)O2—C4—C5108.9 (3)
C1—Sn—Cl1162.49 (10)O2—C4—H4A109.9
O1—Sn—Cl186.08 (6)C5—C4—H4A109.9
O1W—Sn—Cl182.09 (6)O2—C4—H4B109.9
C1—Sn—Cl298.92 (10)C5—C4—H4B109.9
O1—Sn—Cl288.03 (6)H4A—C4—H4B108.3
O1W—Sn—Cl2171.91 (6)O3—C5—C4108.7 (3)
Cl1—Sn—Cl291.10 (3)O3—C5—H5A110.0
C1—Sn—Cl3100.34 (10)C4—C5—H5A110.0
O1—Sn—Cl3177.30 (6)O3—C5—H5B110.0
O1W—Sn—Cl390.20 (6)C4—C5—H5B110.0
Cl1—Sn—Cl393.07 (3)H5A—C5—H5B108.3
Cl2—Sn—Cl394.55 (3)O3—C6—C7107.4 (3)
C3—O1—Sn112.2 (2)O3—C6—H6A110.2
Sn—O1W—H1W115 (3)C7—C6—H6A110.2
Sn—O1W—H2W123 (3)O3—C6—H6B110.2
H1W—O1W—H2W106 (4)C7—C6—H6B110.2
C3—N1—H1N120 (2)H6A—C6—H6B108.5
C3—N1—H2N119 (2)O4—C7—C6113.4 (3)
H1N—N1—H2N120.6 (19)O4—C7—H7A108.9
C2—C1—Sn107.9 (2)C6—C7—H7A108.9
C2—C1—H1A110.1O4—C7—H7B108.9
Sn—C1—H1A110.1C6—C7—H7B108.9
C2—C1—H1B110.1H7A—C7—H7B107.7
Sn—C1—H1B110.1O2—C8—C9i108.6 (3)
H1A—C1—H1B108.4O2—C8—H8A110.0
C3—C2—C1113.6 (3)C9i—C8—H8A110.0
C3—C2—H2A108.9O2—C8—H8B110.0
C1—C2—H2A108.9C9i—C8—H8B110.0
C3—C2—H2B108.9H8A—C8—H8B108.4
C1—C2—H2B108.9O4—C9—C8i108.9 (3)
H2A—C2—H2B107.7O4—C9—H9A109.9
O1—C3—N1121.1 (3)C8i—C9—H9A109.9
O1—C3—C2121.2 (3)O4—C9—H9B109.9
N1—C3—C2117.7 (3)C8i—C9—H9B109.9
C8—O2—C4112.2 (3)H9A—C9—H9B108.3
C1—Sn—O1—C312.0 (2)Sn—O1—C3—C2−1.3 (4)
O1W—Sn—O1—C399.0 (2)C1—C2—C3—O1−15.9 (5)
Cl1—Sn—O1—C3−178.7 (2)C1—C2—C3—N1165.8 (3)
Cl2—Sn—O1—C3−87.5 (2)C8—O2—C4—C5165.3 (3)
O1—Sn—C1—C2−18.7 (2)C6—O3—C5—C4−175.7 (3)
O1W—Sn—C1—C2−106.4 (2)O2—C4—C5—O357.7 (4)
Cl1—Sn—C1—C2−56.6 (4)C5—O3—C6—C7173.4 (3)
Cl2—Sn—C1—C267.6 (2)C9—O4—C7—C6−75.0 (4)
Cl3—Sn—C1—C2164.0 (2)O3—C6—C7—O4−65.3 (3)
Sn—C1—C2—C324.0 (4)C4—O2—C8—C9i177.2 (3)
Sn—O1—C3—N1177.0 (3)C7—O4—C9—C8i−169.7 (3)
D—H···AD—HH···AD···AD—H···A
O1w—H1w···O40.84 (2)1.96 (2)2.784 (3)166 (3)
O1w—H2w···O20.84 (3)2.01 (3)2.839 (3)169 (4)
N1—H1n···O3ii0.88 (3)2.51 (3)3.061 (4)121 (2)
N1—H2n···Cl1iii0.88 (3)2.68 (3)3.516 (3)161 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1w—H1w⋯O40.84 (2)1.96 (2)2.784 (3)166 (3)
O1w—H2w⋯O20.84 (3)2.01 (3)2.839 (3)169 (4)
N1—H1n⋯O3i0.88 (3)2.51 (3)3.061 (4)121 (2)
N1—H2n⋯Cl1ii0.88 (3)2.68 (3)3.516 (3)161 (3)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Sn3I8 x 2 (18-crown-6): a mixed-valent tin-crown-ether complex.

Authors:  Michael Wolff; Thomas Harmening; Rainer Pöttgen; Claus Feldmann
Journal:  Inorg Chem       Date:  2009-04-06       Impact factor: 5.165

  2 in total
  3 in total

1.  fac-Aqua-(2-carboxy-ethyl-κC,O)trichlorido-tin(IV)-1,4,7,10,13-penta-oxacyclo-penta-deca-ne-water (1/1/2).

Authors:  Edward R T Tiekink; James L Wardell; Solange M S V Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-10

2.  (2-Carbamoylethyl-κC,O)triiodidotin(IV).

Authors:  Geraldo M de Lima; Edward R T Tiekink; James L Wardell; Solange M S V Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-12

3.  fac-(2-Amido-ethyl-κC,O)trichlorido(urea-κO)tin(IV).

Authors:  R Alan Howie; Geraldo M de Lima; Edward R T Tiekink; James L Wardell; Solange M S V Wardell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.