Literature DB >> 22209425

A genomic survey shows that the haloarchaeal type tyrosyl tRNA synthetase is not a synapomorphy of opisthokonts.

John D L Shadwick1, Iñaki Ruiz-Trillo.   

Abstract

The haloarchaeal-type tyrosyl tRNA synthetase (tyrRS) have previously been proposed to be a molecular synapomorphy of the opisthokonts. To re-evaluate this we have performed a taxon-wide genomic survey of tyrRS in eukaryotes and prokaryotes. Our phylogenetic trees group eukaryotes with archaea, with all opisthokonts sharing the haloarchaeal-type tyrRS. However, this type of tyrRS is not exclusive to opisthokonts, since it also encoded by two amoebozoans. Whether this is a consequence of lateral gene transfer or lineage sorting remains unsolved, but in any case haloarchaeal-type tyrRS is not a synapomorphy of opisthokonts. This demonstrates that molecular markers should be re-evaluated once a better taxon sampling becomes available.
Copyright © 2011 Elsevier GmbH. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 22209425      PMCID: PMC4342543          DOI: 10.1016/j.ejop.2011.10.003

Source DB:  PubMed          Journal:  Eur J Protistol        ISSN: 0932-4739            Impact factor:   3.020


  21 in total

1.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

Authors:  J Castresana
Journal:  Mol Biol Evol       Date:  2000-04       Impact factor: 16.240

2.  The closest unicellular relatives of animals.

Authors:  B F Lang; C O'Kelly; T Nerad; M W Gray; G Burger
Journal:  Curr Biol       Date:  2002-10-15       Impact factor: 10.834

3.  MrBayes 3: Bayesian phylogenetic inference under mixed models.

Authors:  Fredrik Ronquist; John P Huelsenbeck
Journal:  Bioinformatics       Date:  2003-08-12       Impact factor: 6.937

4.  Ancient origin of the integrin-mediated adhesion and signaling machinery.

Authors:  Arnau Sebé-Pedrós; Andrew J Roger; Franz B Lang; Nicole King; Iñaki Ruiz-Trillo
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-17       Impact factor: 11.205

5.  Capsaspora owczarzaki is an independent opisthokont lineage.

Authors:  Iñaki Ruiz-Trillo; Yuji Inagaki; Lesley A Davis; Sigmund Sperstad; Bjarne Landfald; Andrew J Roger
Journal:  Curr Biol       Date:  2004-11-23       Impact factor: 10.834

6.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

Review 7.  Ancient gene transfer as a tool in phylogenetic reconstruction.

Authors:  Jinling Huang; Johann Peter Gogarten
Journal:  Methods Mol Biol       Date:  2009

8.  Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins.

Authors:  S L Baldauf; J D Palmer
Journal:  Proc Natl Acad Sci U S A       Date:  1993-12-15       Impact factor: 11.205

9.  Phylogeny of the "forgotten" cellular slime mold, Fonticula alba, reveals a key evolutionary branch within Opisthokonta.

Authors:  Matthew W Brown; Frederick W Spiegel; Jeffrey D Silberman
Journal:  Mol Biol Evol       Date:  2009-08-19       Impact factor: 16.240

10.  A phylogenomic investigation into the origin of metazoa.

Authors:  Iñaki Ruiz-Trillo; Andrew J Roger; Gertraud Burger; Michael W Gray; B Franz Lang
Journal:  Mol Biol Evol       Date:  2008-01-09       Impact factor: 16.240

View more
  3 in total

1.  Recent events dominate interdomain lateral gene transfers between prokaryotes and eukaryotes and, with the exception of endosymbiotic gene transfers, few ancient transfer events persist.

Authors:  Laura A Katz
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-09-26       Impact factor: 6.237

2.  Molecular phylogeny of unikonts: new insights into the position of apusomonads and ancyromonads and the internal relationships of opisthokonts.

Authors:  Jordi Paps; Luis A Medina-Chacón; Wyth Marshall; Hiroshi Suga; Iñaki Ruiz-Trillo
Journal:  Protist       Date:  2012-10-18

3.  Evolution and classification of myosins, a paneukaryotic whole-genome approach.

Authors:  Arnau Sebé-Pedrós; Xavier Grau-Bové; Thomas A Richards; Iñaki Ruiz-Trillo
Journal:  Genome Biol Evol       Date:  2014-02       Impact factor: 3.416

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.