Literature DB >> 22206385

Temperature dependence of molecular interactions involved in defining stability of glutamine binding protein and its complex with L-glutamine.

Sara Pistolesi1, Nico Tjandra.   

Abstract

The temperature dependence of dynamic parameters derived from nuclear magnetic resonance (NMR) relaxation data is related to conformational entropy of the system under study. This provides information such as macromolecules stability and thermodynamics of ligand binding. We studied the temperature dependence of NMR order parameter of glutamine binding protein (GlnBP), a periplasmic binding protein (PBP) highly specific to L-glutamine associated with its ABC transporter, with the goal of elucidating the dynamical differences between the respective ligand bound and free forms. We found that the protein-ligand interaction, which is stabilized at higher temperature, has a striking effect on the stability of the hydrophobic core of the large domain of GlnBP. Moreover, in contrast to what was found for less specific PBPs, the decreasing backbone motion of the hinge region at increasing temperature supports the idea that the likelihood that GlnBP can adopt a ligand free closed conformation in solution diminishes at higher temperatures. Our results support the induced-fit model as mode of action for GlnBP. In addition, we found that the backbones of residues involved in a salt bridge do not necessarily become more rigid as the temperature rises as it was previously suggested [Vinther, J. M., et al. (2011) J. Am. Chem. Soc., 133, 271-278]. Our results show that for this to happen these residues have to also directly interact with a region of the protein that is becoming more rigid as the temperature increases.

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Year:  2012        PMID: 22206385      PMCID: PMC3513781          DOI: 10.1021/bi201494h

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  34 in total

1.  Structure, dynamics, and thermodynamics of the structural domain of troponin C in complex with the regulatory peptide 1-40 of troponin I.

Authors:  P Mercier; L Spyracopoulos; B D Sykes
Journal:  Biochemistry       Date:  2001-08-28       Impact factor: 3.162

2.  Temperature dependence of the internal dynamics of a calmodulin-peptide complex.

Authors:  Andrew L Lee; Kim A Sharp; James K Kranz; Xiang-Jin Song; A Joshua Wand
Journal:  Biochemistry       Date:  2002-11-19       Impact factor: 3.162

3.  Temperature dependence of domain motions of calmodulin probed by NMR relaxation at multiple fields.

Authors:  Shou-Lin Chang; Attila Szabo; Nico Tjandra
Journal:  J Am Chem Soc       Date:  2003-09-17       Impact factor: 15.419

4.  Temperature dependence of fast dynamics in proteins.

Authors:  Xiang-jin Song; Peter F Flynn; Kim A Sharp; A Joshua Wand
Journal:  Biophys J       Date:  2007-01-11       Impact factor: 4.033

5.  The structure of glutamine-binding protein complexed with glutamine at 1.94 A resolution: comparisons with other amino acid binding proteins.

Authors:  Y J Sun; J Rose; B C Wang; C D Hsiao
Journal:  J Mol Biol       Date:  1998-04-24       Impact factor: 5.469

6.  Concerted motion of a protein-peptide complex: backbone dynamics studies of an (15)N-labeled peptide derived from P(21)-activated kinase bound to Cdc42Hs.GMPPCP.

Authors:  D Gizachew; R E Oswald
Journal:  Biochemistry       Date:  2001-12-04       Impact factor: 3.162

7.  Crystals of glutamine-binding protein in various conformational states.

Authors:  C D Hsiao; Y J Sun; J Rose; P F Cottam; C Ho; B C Wang
Journal:  J Mol Biol       Date:  1994-07-01       Impact factor: 5.469

Review 8.  The crystal structure of glutamine-binding protein from Escherichia coli.

Authors:  C D Hsiao; Y J Sun; J Rose; B C Wang
Journal:  J Mol Biol       Date:  1996-09-20       Impact factor: 5.469

9.  The 1.9 A x-ray structure of a closed unliganded form of the periplasmic glucose/galactose receptor from Salmonella typhimurium.

Authors:  M M Flocco; S L Mowbray
Journal:  J Biol Chem       Date:  1994-03-25       Impact factor: 5.157

10.  Dynamics and entropy of a calmodulin-peptide complex studied by NMR and molecular dynamics.

Authors:  Ninad V Prabhu; Andrew L Lee; A Joshua Wand; Kim A Sharp
Journal:  Biochemistry       Date:  2003-01-21       Impact factor: 3.162

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  3 in total

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Authors:  Hamed Kooshapur; Junhe Ma; Nico Tjandra; Guillermo A Bermejo
Journal:  Angew Chem Int Ed Engl       Date:  2019-10-11       Impact factor: 15.336

2.  Dietary High Zinc Oxide Modulates the Microbiome of Ileum and Colon in Weaned Piglets.

Authors:  Ting Yu; Cui Zhu; Shicheng Chen; Lei Gao; Hang Lv; Ruowei Feng; Qingfeng Zhu; Jinsong Xu; Zhuang Chen; Zongyong Jiang
Journal:  Front Microbiol       Date:  2017-05-09       Impact factor: 5.640

3.  Ligand-bound glutamine binding protein assumes multiple metastable binding sites with different binding affinities.

Authors:  Lu Zhang; Shaowen Wu; Yitao Feng; Dan Wang; Xilin Jia; Zhijun Liu; Jianwei Liu; Wenning Wang
Journal:  Commun Biol       Date:  2020-08-03
  3 in total

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