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Literature DB >> 22205517

Tracking genomic hydroxymethylation by the base.

Gilles Salbert, Michael Weber.

Abstract

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Year: 2011 PMID： 22205517 DOI： 10.1038/nmeth.1813

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

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11 in total

1. TET2 inactivation results in pleiotropic hematopoietic abnormalities in mouse and is a recurrent event during human lymphomagenesis.

Authors: Cyril Quivoron; Lucile Couronné; Véronique Della Valle; Cécile K Lopez; Isabelle Plo; Orianne Wagner-Ballon; Marcio Do Cruzeiro; Francois Delhommeau; Bertrand Arnulf; Marc-Henri Stern; Lucy Godley; Paule Opolon; Hervé Tilly; Eric Solary; Yannis Duffourd; Philippe Dessen; Hélène Merle-Beral; Florence Nguyen-Khac; Michaëla Fontenay; William Vainchenker; Christian Bastard; Thomas Mercher; Olivier A Bernard
Journal: Cancer Cell Date: 2011-06-30 Impact factor: 31.743

2. Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine.

Authors: Chun-Xiao Song; Tyson A Clark; Xing-Yu Lu; Andrey Kislyuk; Qing Dai; Stephen W Turner; Chuan He; Jonas Korlach
Journal: Nat Methods Date: 2011-11-20 Impact factor: 28.547

3. Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells.

Authors: William A Pastor; Utz J Pape; Yun Huang; Hope R Henderson; Ryan Lister; Myunggon Ko; Erin M McLoughlin; Yevgeny Brudno; Sahasransu Mahapatra; Philipp Kapranov; Mamta Tahiliani; George Q Daley; X Shirley Liu; Joseph R Ecker; Patrice M Milos; Suneet Agarwal; Anjana Rao
Journal: Nature Date: 2011-05-08 Impact factor: 49.962

4. Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine.

Authors: Chun-Xiao Song; Keith E Szulwach; Ye Fu; Qing Dai; Chengqi Yi; Xuekun Li; Yujing Li; Chih-Hsin Chen; Wen Zhang; Xing Jian; Jing Wang; Li Zhang; Timothy J Looney; Baichen Zhang; Lucy A Godley; Leslie M Hicks; Bruce T Lahn; Peng Jin; Chuan He
Journal: Nat Biotechnol Date: 2010-12-12 Impact factor: 54.908

5. The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes.

Authors: Tian-Peng Gu; Fan Guo; Hui Yang; Hai-Ping Wu; Gui-Fang Xu; Wei Liu; Zhi-Guo Xie; Linyu Shi; Xinyi He; Seung-gi Jin; Khursheed Iqbal; Yujiang Geno Shi; Zixin Deng; Piroska E Szabó; Gerd P Pfeifer; Jinsong Li; Guo-Liang Xu
Journal: Nature Date: 2011-09-04 Impact factor: 49.962

Tracking genomic hydroxymethylation by the base.

1. TET2 inactivation results in pleiotropic hematopoietic abnormalities in mouse and is a recurrent event during human lymphomagenesis.

2. Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine.

3. Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells.

4. Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine.

5. The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes.

6. The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing.

7. Direct detection of DNA methylation during single-molecule, real-time sequencing.

8. The presence of 5-hydroxymethylcytosine in animal deoxyribonucleic acid.

9. Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation.

10. The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain.

Review 1. DNA methylation methods: Global DNA methylation and methylomic analyses.