Literature DB >> 22204431

Natural and engineered cystine knot miniproteins for diagnostic and therapeutic applications.

Harald Kolmar1.   

Abstract

Cystine knot miniproteins define a class of peptides in the size range of approximately 28-35 amino acid residues that often combine high chemical and biological stability with high potency and selectivity. They share a common structural motif that is defined by three intramolecular disulfide bonds that gives rise to a very stable scaffold. Members of this family cover a broad spectrum of natural bioactivities ranging from antimicrobial and antiviral activities to selective blockage or activation of ion channels, cell surface receptors and extracelluar proteases. In recent years, the spectrum of natural bioactivities of this class of miniproteins was further expanded by application of protein design and directed evolution technologies. Miniproteins have been developed that inhibit platelet aggregation, block asthma-related proteases, act as growth factor mimics or address human tumor targets. Recent reports on miniproteins binding to cancer specific targets indicate that these biomolecules due to their particularly high in vivo stability, high target affinity, good tissue distribution, and fast body clearance are very promising agents that can be endowed with important beneficial features for imaging and therapeutic applications. With the first cystine-knot miniprotein already marketed as an analgesic, more candidates can be expected to find their way into the clinic for diagnostic and therapeutic applications over next years.

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Year:  2011        PMID: 22204431     DOI: 10.2174/138161211798999465

Source DB:  PubMed          Journal:  Curr Pharm Des        ISSN: 1381-6128            Impact factor:   3.116


  14 in total

1.  Protein production in Yarrowia lipolytica via fusion to the secreted lipase Lip2p.

Authors:  Thomas Hofmeyer; Siyavuya Ishmael Bulani; Julius Grzeschik; Simon Krah; Bernhard Glotzbach; Christina Uth; Olga Avrutina; Michael Brecht; Hans Ulrich Göringer; Petrus van Zyl; Harald Kolmar
Journal:  Mol Biotechnol       Date:  2014-01       Impact factor: 2.695

2.  Structural venomics reveals evolution of a complex venom by duplication and diversification of an ancient peptide-encoding gene.

Authors:  Sandy S Pineda; Yanni K-Y Chin; Eivind A B Undheim; Sebastian Senff; Mehdi Mobli; Claire Dauly; Pierre Escoubas; Graham M Nicholson; Quentin Kaas; Shaodong Guo; Volker Herzig; John S Mattick; Glenn F King
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-12       Impact factor: 11.205

3.  Engineered knottin peptide enables noninvasive optical imaging of intracranial medulloblastoma.

Authors:  Sarah J Moore; Melanie G Hayden Gephart; Jamie M Bergen; YouRong S Su; Helen Rayburn; Matthew P Scott; Jennifer R Cochran
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-15       Impact factor: 11.205

4.  Cytosolic expression, solution structures, and molecular dynamics simulation of genetically encodable disulfide-rich de novo designed peptides.

Authors:  Garry W Buchko; Surya V S R K Pulavarti; Victor Ovchinnikov; Elizabeth A Shaw; Stephen A Rettie; Peter J Myler; Martin Karplus; Thomas Szyperski; David Baker; Christopher D Bahl
Journal:  Protein Sci       Date:  2018-09       Impact factor: 6.725

5.  A workflow for in silico design of hIL-10 and ebvIL-10 inhibitors using well-known miniprotein scaffolds.

Authors:  Salvador Dueñas; Sergio A Aguila; Genaro Pimienta
Journal:  J Mol Model       Date:  2017-03-14       Impact factor: 1.810

6.  Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10.

Authors:  Andriy Kryshtafovych; John Moult; Patrick Bales; J Fernando Bazan; Marco Biasini; Alex Burgin; Chen Chen; Frank V Cochran; Timothy K Craig; Rhiju Das; Deborah Fass; Carmela Garcia-Doval; Osnat Herzberg; Donald Lorimer; Hartmut Luecke; Xiaolei Ma; Daniel C Nelson; Mark J van Raaij; Forest Rohwer; Anca Segall; Victor Seguritan; Kornelius Zeth; Torsten Schwede
Journal:  Proteins       Date:  2014-02

7.  Structural insights and biomedical potential of IgNAR scaffolds from sharks.

Authors:  Stefan Zielonka; Martin Empting; Julius Grzeschik; Doreen Könning; Caroline J Barelle; Harald Kolmar
Journal:  MAbs       Date:  2015       Impact factor: 5.857

8.  Engineering agatoxin, a cystine-knot peptide from spider venom, as a molecular probe for in vivo tumor imaging.

Authors:  Sarah J Moore; Cheuk Lun Leung; Heidi K Norton; Jennifer R Cochran
Journal:  PLoS One       Date:  2013-04-03       Impact factor: 3.240

9.  A Bioengineered Peptide that Localizes to and Illuminates Medulloblastoma: A New Tool with Potential for Fluorescence-Guided Surgical Resection.

Authors:  Shelley E Ackerman; Christy M Wilson; Suzana A Kahn; James R Kintzing; Darren A Jindal; Samuel H Cheshier; Gerald A Grant; Jennifer R Cochran
Journal:  Cureus       Date:  2014-09-17

10.  Screening, large-scale production and structure-based classification of cystine-dense peptides.

Authors:  Colin E Correnti; Mesfin M Gewe; Christopher Mehlin; Ashok D Bandaranayake; William A Johnsen; Peter B Rupert; Mi-Youn Brusniak; Midori Clarke; Skyler E Burke; Willem De Van Der Schueren; Kristina Pilat; Shanon M Turnbaugh; Damon May; Alex Watson; Man Kid Chan; Christopher D Bahl; James M Olson; Roland K Strong
Journal:  Nat Struct Mol Biol       Date:  2018-02-26       Impact factor: 18.361

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