Literature DB >> 22203704

Hierarchical scale-based multiobject recognition of 3-D anatomical structures.

Ulas Bagci1, Xinjian Chen, Jayaram K Udupa.   

Abstract

Segmentation of anatomical structures from medical images is a challenging problem, which depends on the accurate recognition (localization) of anatomical structures prior to delineation. This study generalizes anatomy segmentation problem via attacking two major challenges: 1) automatically locating anatomical structures without doing search or optimization, and 2) automatically delineating the anatomical structures based on the located model assembly. For 1), we propose intensity weighted ball-scale object extraction concept to build a hierarchical transfer function from image space to object (shape) space such that anatomical structures in 3-D medical images can be recognized without the need to perform search or optimization. For 2), we integrate the graph-cut (GC) segmentation algorithm with prior shape model. This integrated segmentation framework is evaluated on clinical 3-D images consisting of a set of 20 abdominal CT scans. In addition, we use a set of 11 foot MR images to test the generalizability of our method to the different imaging modalities as well as robustness and accuracy of the proposed methodology. Since MR image intensities do not possess a tissue specific numeric meaning, we also explore the effects of intensity nonstandardness on anatomical object recognition. Experimental results indicate that: 1) effective recognition can make the delineation more accurate; 2) incorporating a large number of anatomical structures via a model assembly in the shape model improves the recognition and delineation accuracy dramatically; 3) ball-scale yields useful information about the relationship between the objects and the image; 4) intensity variation among scenes in an ensemble degrades object recognition performance.

Mesh:

Year:  2011        PMID: 22203704     DOI: 10.1109/TMI.2011.2180920

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  20 in total

1.  Abdominal multi-organ segmentation from CT images using conditional shape-location and unsupervised intensity priors.

Authors:  Toshiyuki Okada; Marius George Linguraru; Masatoshi Hori; Ronald M Summers; Noriyuki Tomiyama; Yoshinobu Sato
Journal:  Med Image Anal       Date:  2015-07-04       Impact factor: 8.545

2.  Joint solution for PET image segmentation, denoising, and partial volume correction.

Authors:  Ziyue Xu; Mingchen Gao; Georgios Z Papadakis; Brian Luna; Sanjay Jain; Daniel J Mollura; Ulas Bagci
Journal:  Med Image Anal       Date:  2018-03-28       Impact factor: 8.545

3.  Efficient multi-atlas abdominal segmentation on clinically acquired CT with SIMPLE context learning.

Authors:  Zhoubing Xu; Ryan P Burke; Christopher P Lee; Rebeccah B Baucom; Benjamin K Poulose; Richard G Abramson; Bennett A Landman
Journal:  Med Image Anal       Date:  2015-05-21       Impact factor: 8.545

4.  A generic approach to pathological lung segmentation.

Authors:  Awais Mansoor; Ulas Bagci; Ziyue Xu; Brent Foster; Kenneth N Olivier; Jason M Elinoff; Anthony F Suffredini; Jayaram K Udupa; Daniel J Mollura
Journal:  IEEE Trans Med Imaging       Date:  2014-07-08       Impact factor: 10.048

Review 5.  Segmentation and Image Analysis of Abnormal Lungs at CT: Current Approaches, Challenges, and Future Trends.

Authors:  Awais Mansoor; Ulas Bagci; Brent Foster; Ziyue Xu; Georgios Z Papadakis; Les R Folio; Jayaram K Udupa; Daniel J Mollura
Journal:  Radiographics       Date:  2015 Jul-Aug       Impact factor: 5.333

Review 6.  A review on segmentation of positron emission tomography images.

Authors:  Brent Foster; Ulas Bagci; Awais Mansoor; Ziyue Xu; Daniel J Mollura
Journal:  Comput Biol Med       Date:  2014-04-28       Impact factor: 4.589

7.  Automatic detection and quantification of tree-in-bud (TIB) opacities from CT scans.

Authors:  Ulas Bagci; Jianhua Yao; Albert Wu; Jesus Caban; Tara N Palmore; Anthony F Suffredini; Omer Aras; Daniel J Mollura
Journal:  IEEE Trans Biomed Eng       Date:  2012-03-14       Impact factor: 4.538

8.  Optical Flow Methods for Lung Nodule Segmentation on LIDC-IDRI Images.

Authors:  R Jenkin Suji; Sarita Singh Bhadouria; Joydip Dhar; W Wilfred Godfrey
Journal:  J Digit Imaging       Date:  2020-10       Impact factor: 4.056

9.  Joint segmentation of anatomical and functional images: applications in quantification of lesions from PET, PET-CT, MRI-PET, and MRI-PET-CT images.

Authors:  Ulas Bagci; Jayaram K Udupa; Neil Mendhiratta; Brent Foster; Ziyue Xu; Jianhua Yao; Xinjian Chen; Daniel J Mollura
Journal:  Med Image Anal       Date:  2013-05-23       Impact factor: 8.545

10.  Segmentation of PET images for computer-aided functional quantification of tuberculosis in small animal models.

Authors:  Brent Foster; Ulas Bagci; Bappaditya Dey; Brian Luna; William Bishai; Sanjay Jain; Daniel J Mollura
Journal:  IEEE Trans Biomed Eng       Date:  2013-11-05       Impact factor: 4.538

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