Literature DB >> 22199725

N-(2,6-Dichloro-phen-yl)-5-methyl-1,2-oxazole-4-carboxamide monohydrate.

De-Cai Wang1, Liang-Cheng Huang, Hua-Quan Liu, Yu-Ran Peng, Jun-Song Song.   

Abstract

In the title compound, C(11)H(8)Cl(2)N(2)O(2)·H(2)O, the dihedral angle between the benzene and isoxazole rings is 59.10 (7)°. In the crystal, the components are linked by N-H⋯O and O-H⋯O hydrogen bonds into a three-dimensional network. The crystal structure is further stabilized by π-π stacking inter-actions [centroid-centroid distance = 3.804 (2) Å].

Entities:  

Year:  2011        PMID: 22199725      PMCID: PMC3238872          DOI: 10.1107/S1600536811044734

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was synthesised as a new and potent immunomodulating leflunomide {systematic name: 5-methyl-N-[4-(trifluoro­meth­yl)phen­yl]-isoxazole-4-carboxamide} ana­log (Huang et al., 2003 ▶). For the application of leflunomide in the treatment of rheumatoid arthritis, see: Shaw et al. (2011 ▶); Schattenkirchner et al. (2000 ▶).

Experimental

Crystal data

C11H8Cl2N2O2·H2O M = 289.11 Orthorhombic, a = 12.047 (2) Å b = 8.2290 (16) Å c = 13.086 (3) Å V = 1297.3 (4) Å3 Z = 4 Mo Kα radiation μ = 0.50 mm−1 T = 293 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (SADABS; Sheldrick, 1996 ▶) T min = 0.864, T max = 0.952 2333 measured reflections 2333 independent reflections 1906 reflections with I > 2σ(I) 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.118 S = 1.00 2333 reflections 164 parameters 1 restraint H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: Flack (1983 ▶), 1107 Friedel pairs Flack parameter: 0.04 (9) Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo,1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811044734/gw2111sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044734/gw2111Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811044734/gw2111Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H8Cl2N2O2·H2ODx = 1.480 Mg m3
Mr = 289.11Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, Pna21Cell parameters from 25 reflections
a = 12.047 (2) Åθ = 9–13°
b = 8.2290 (16) ŵ = 0.50 mm1
c = 13.086 (3) ÅT = 293 K
V = 1297.3 (4) Å3Block, white
Z = 40.30 × 0.20 × 0.10 mm
F(000) = 592
Enraf–Nonius CAD-4 diffractometer1906 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.000
graphiteθmax = 25.4°, θmin = 3.0°
ω/2θ scansh = 0→14
Absorption correction: ψ scan (SADABS; Sheldrick, 1996)k = −9→0
Tmin = 0.864, Tmax = 0.952l = −15→15
2333 measured reflections3 standard reflections every 200 reflections
2333 independent reflections intensity decay: 1%
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.045w = 1/[σ2(Fo2) + (0.073P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.118(Δ/σ)max < 0.001
S = 1.00Δρmax = 0.19 e Å3
2333 reflectionsΔρmin = −0.18 e Å3
164 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.038 (3)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1107 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.04 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.34861 (10)−0.10973 (15)0.99733 (8)0.0766 (4)
N10.4813 (2)0.0638 (3)0.8429 (2)0.0426 (6)
H1A0.50090.12940.89070.051*
O10.5393 (2)−0.1120 (4)0.7213 (2)0.0572 (7)
C10.2951 (3)−0.0268 (5)0.8868 (3)0.0482 (9)
Cl20.40753 (8)0.20917 (15)0.64182 (8)0.0679 (3)
N20.8178 (3)0.0689 (5)0.9349 (3)0.0695 (10)
C20.1817 (3)−0.0353 (5)0.8670 (4)0.0654 (12)
H2B0.1340−0.08290.91420.078*
O20.85611 (19)−0.0172 (4)0.8485 (2)0.0633 (8)
C30.1411 (3)0.0275 (6)0.7769 (4)0.0689 (12)
H3A0.06540.02130.76310.083*
C40.2092 (3)0.0973 (5)0.7089 (4)0.0605 (10)
H4A0.18070.13690.64780.073*
C50.3222 (3)0.1113 (4)0.7288 (3)0.0479 (8)
C60.3673 (3)0.0494 (4)0.8180 (3)0.0405 (7)
C70.5598 (3)−0.0226 (4)0.7937 (2)0.0400 (7)
C80.6743 (3)−0.0017 (4)0.8333 (3)0.0447 (8)
C90.7686 (3)−0.0582 (4)0.7899 (3)0.0474 (8)
C100.7108 (3)0.0774 (5)0.9239 (3)0.0579 (10)
H10A0.66360.12910.96980.069*
C110.7943 (3)−0.1487 (6)0.6956 (3)0.0623 (11)
H11A0.8728−0.16790.69190.094*
H11B0.7712−0.08630.63740.094*
H11C0.7558−0.25080.69620.094*
OW0.9991 (2)0.2436 (4)1.02747 (19)0.0577 (7)
HWA0.98560.14411.03980.069*
HWB0.98820.30051.08070.069*
U11U22U33U12U13U23
Cl10.0827 (8)0.0957 (8)0.0513 (6)−0.0078 (6)0.0037 (5)0.0203 (6)
N10.0319 (13)0.0569 (17)0.0391 (14)0.0007 (12)−0.0025 (12)−0.0103 (13)
O10.0431 (13)0.0740 (18)0.0546 (16)0.0039 (13)−0.0028 (12)−0.0211 (14)
C10.045 (2)0.055 (2)0.0453 (19)0.0018 (16)0.0044 (16)0.0008 (17)
Cl20.0573 (6)0.0872 (7)0.0594 (6)−0.0051 (5)0.0004 (5)0.0229 (5)
N20.0433 (19)0.087 (3)0.078 (3)−0.0051 (17)−0.0078 (16)−0.007 (2)
C20.041 (2)0.069 (3)0.086 (3)−0.0103 (18)0.016 (2)−0.004 (2)
O20.0347 (14)0.080 (2)0.0756 (19)0.0004 (12)0.0016 (14)0.0016 (16)
C30.035 (2)0.077 (3)0.094 (4)−0.001 (2)−0.008 (2)−0.001 (3)
C40.039 (2)0.070 (3)0.073 (3)0.0044 (19)−0.0099 (19)0.005 (2)
C50.0416 (18)0.051 (2)0.051 (2)−0.0009 (16)−0.0008 (15)−0.0015 (17)
C60.0289 (15)0.0504 (18)0.0423 (17)0.0050 (13)−0.0009 (13)−0.0030 (14)
C70.0285 (16)0.0519 (19)0.0397 (18)0.0010 (14)0.0024 (13)0.0005 (16)
C80.0377 (17)0.0455 (19)0.051 (2)0.0009 (14)0.0019 (16)0.0037 (17)
C90.0363 (19)0.050 (2)0.055 (2)−0.0010 (16)0.0024 (16)0.0094 (17)
C100.038 (2)0.077 (3)0.059 (2)−0.0035 (18)−0.0050 (18)−0.007 (2)
C110.053 (2)0.071 (3)0.063 (2)0.0140 (19)0.010 (2)0.001 (2)
OW0.0544 (14)0.0756 (18)0.0430 (12)−0.0051 (13)0.0021 (12)−0.0017 (12)
Cl1—C11.724 (4)C3—H3A0.9300
N1—C71.347 (4)C4—C51.391 (5)
N1—C61.416 (4)C4—H4A0.9300
N1—H1A0.8600C5—C61.384 (5)
O1—C71.224 (4)C7—C81.483 (4)
C1—C21.392 (5)C8—C91.352 (5)
C1—C61.400 (5)C8—C101.423 (5)
Cl2—C51.733 (4)C9—C111.474 (5)
N2—C101.299 (5)C10—H10A0.9300
N2—O21.412 (5)C11—H11A0.9600
C2—C31.378 (6)C11—H11B0.9600
C2—H2B0.9300C11—H11C0.9600
O2—C91.347 (4)OW—HWA0.8500
C3—C41.340 (6)OW—HWB0.8499
C7—N1—C6121.8 (3)C5—C6—N1123.0 (3)
C7—N1—H1A119.1C1—C6—N1119.4 (3)
C6—N1—H1A119.1O1—C7—N1123.0 (3)
C2—C1—C6120.8 (4)O1—C7—C8121.9 (3)
C2—C1—Cl1120.2 (3)N1—C7—C8115.2 (3)
C6—C1—Cl1119.0 (3)C9—C8—C10104.4 (3)
C10—N2—O2105.2 (3)C9—C8—C7126.5 (3)
C3—C2—C1119.3 (4)C10—C8—C7129.2 (3)
C3—C2—H2B120.4O2—C9—C8109.4 (3)
C1—C2—H2B120.4O2—C9—C11116.0 (3)
C9—O2—N2109.0 (3)C8—C9—C11134.6 (4)
C4—C3—C2120.7 (4)N2—C10—C8112.0 (4)
C4—C3—H3A119.6N2—C10—H10A124.0
C2—C3—H3A119.6C8—C10—H10A124.0
C3—C4—C5120.7 (4)C9—C11—H11A109.5
C3—C4—H4A119.6C9—C11—H11B109.5
C5—C4—H4A119.6H11A—C11—H11B109.5
C6—C5—C4120.8 (4)C9—C11—H11C109.5
C6—C5—Cl2119.5 (3)H11A—C11—H11C109.5
C4—C5—Cl2119.7 (3)H11B—C11—H11C109.5
C5—C6—C1117.6 (3)HWA—OW—HWB110.3
C6—C1—C2—C32.1 (6)C7—N1—C6—C1109.6 (4)
Cl1—C1—C2—C3−178.1 (4)C6—N1—C7—O14.0 (5)
C10—N2—O2—C9−0.8 (4)C6—N1—C7—C8−176.2 (3)
C1—C2—C3—C4−0.5 (7)O1—C7—C8—C98.6 (6)
C2—C3—C4—C5−1.5 (7)N1—C7—C8—C9−171.2 (3)
C3—C4—C5—C61.8 (6)O1—C7—C8—C10−170.2 (4)
C3—C4—C5—Cl2−177.5 (4)N1—C7—C8—C109.9 (6)
C4—C5—C6—C1−0.2 (5)N2—O2—C9—C80.6 (4)
Cl2—C5—C6—C1179.1 (3)N2—O2—C9—C11179.7 (3)
C4—C5—C6—N1−178.5 (3)C10—C8—C9—O2−0.2 (4)
Cl2—C5—C6—N10.8 (5)C7—C8—C9—O2−179.2 (3)
C2—C1—C6—C5−1.8 (5)C10—C8—C9—C11−179.0 (4)
Cl1—C1—C6—C5178.5 (3)C7—C8—C9—C111.9 (7)
C2—C1—C6—N1176.6 (3)O2—N2—C10—C80.7 (5)
Cl1—C1—C6—N1−3.1 (5)C9—C8—C10—N2−0.3 (5)
C7—N1—C6—C5−72.1 (4)C7—C8—C10—N2178.7 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···OWi0.862.072.897 (4)161.
OW—HWB···O1ii0.852.002.839 (3)168.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯OWi0.862.072.897 (4)161
OW—HWB⋯O1ii0.852.002.839 (3)168

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  The use of leflunomide in the treatment of rheumatoid arthritis: an experimental and clinical review.

Authors:  M Schattenkirchner
Journal:  Immunopharmacology       Date:  2000-05

3.  Leflunomide analogues as potential antiinflammatory agents.

Authors:  Wen-Hsin Huang; Chiao-Li Yang; An-Rong Lee; Hui-Fen Chiu
Journal:  Chem Pharm Bull (Tokyo)       Date:  2003-03       Impact factor: 1.645

  3 in total
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1.  Crystal structure and Hirshfeld surface analysis of 4-(4-chloro-phen-yl)-5-methyl-3-{4-[(2-methyl-phen-yl)meth-oxy]phen-yl}-1,2-oxazole.

Authors:  Abdullah Aydin; Mehmet Akkurt; Sumeyye Turanli; Deniz Lengerli; Erden Banoglu; Nefise Dilek Ozcelik
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2021-03-05

2.  5-Methyl-N-(1,3-thia-zol-2-yl)isoxazole-4-carboxamide.

Authors:  De-Cai Wang; Xiang Sun; Peng Su; Ping-Kai Ou-Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-11
  2 in total

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