Literature DB >> 22199700

N-(4-Chloro-phen-yl)-3-nitro-pyridin-2-amine.

Aina Mardia Akhmad Aznan, Zainal Abidin Fairuz, Zanariah Abdullah, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C(11)H(8)ClN(3)O(2), the presence of intra-molecular N-H⋯O and C-H⋯N inter-actions help to establish an almost planar mol-ecule [dihedral angle between the pyridine and benzene rings = 9.89 (8)° and r.m.s. deviation for all 17 non-H atoms = 0.120 Å]. Supra-molecular tapes feature in the crystal packing whereby dimeric aggregates sustained by pairs of C-H⋯O inter-actions are connected by π-π inter-actions occurring between translationally related pyridine rings and between translationally related benzene rings along the b axis [centroid-centroid distance = length of b axis = 3.8032 (4) Å].

Entities:  

Year:  2011        PMID: 22199700      PMCID: PMC3238847          DOI: 10.1107/S1600536811045570

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of a related pyrimidine amine derivative, see: Aznan Akhmad et al. (2010 ▶).

Experimental

Crystal data

C11H8ClN3O2 M = 249.65 Monoclinic, a = 30.472 (3) Å b = 3.8032 (4) Å c = 21.300 (2) Å β = 123.153 (1)° V = 2066.7 (4) Å3 Z = 8 Mo Kα radiation μ = 0.36 mm−1 T = 100 K 0.40 × 0.15 × 0.05 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.869, T max = 0.982 8919 measured reflections 2347 independent reflections 1912 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.091 S = 1.00 2347 reflections 158 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811045570/hb6473sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811045570/hb6473Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811045570/hb6473Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H8ClN3O2F(000) = 1024
Mr = 249.65Dx = 1.605 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2586 reflections
a = 30.472 (3) Åθ = 2.3–28.0°
b = 3.8032 (4) ŵ = 0.36 mm1
c = 21.300 (2) ÅT = 100 K
β = 123.153 (1)°Prism, red-brown
V = 2066.7 (4) Å30.40 × 0.15 × 0.05 mm
Z = 8
Bruker SMART APEX CCD diffractometer2347 independent reflections
Radiation source: fine-focus sealed tube1912 reflections with I > 2σ(I)
graphiteRint = 0.042
ω scansθmax = 27.5°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −36→38
Tmin = 0.869, Tmax = 0.982k = −4→4
8919 measured reflectionsl = −27→27
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.091H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0483P)2 + 1.1995P] where P = (Fo2 + 2Fc2)/3
2347 reflections(Δ/σ)max = 0.001
158 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.22 e Å3
Refinement. Refinement of F^2^ against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > 2σ(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.223442 (15)0.15167 (11)0.28841 (2)0.01760 (13)
O10.00287 (5)1.1095 (3)0.32850 (6)0.0239 (3)
O2−0.01657 (5)1.3711 (4)0.40019 (7)0.0271 (3)
N10.09477 (5)0.8069 (4)0.38672 (8)0.0151 (3)
H1n0.0640 (8)0.866 (5)0.3481 (11)0.021 (5)*
N20.14771 (5)0.8205 (4)0.51652 (7)0.0155 (3)
N30.01356 (5)1.1930 (4)0.39171 (8)0.0180 (3)
C10.10203 (6)0.9037 (4)0.45291 (9)0.0141 (3)
C20.06265 (6)1.0832 (4)0.45711 (9)0.0148 (3)
C30.07133 (7)1.1672 (4)0.52649 (9)0.0175 (3)
H30.04521.28590.52960.021*
C40.11814 (7)1.0768 (4)0.59046 (9)0.0181 (4)
H40.12521.12990.63880.022*
C50.15475 (6)0.9047 (4)0.58188 (9)0.0172 (3)
H50.18720.84270.62610.021*
C60.12870 (6)0.6443 (4)0.36965 (9)0.0137 (3)
C70.18163 (6)0.5712 (4)0.42051 (9)0.0161 (3)
H70.19780.62490.47220.019*
C80.21055 (6)0.4195 (4)0.39510 (9)0.0163 (3)
H80.24670.37080.42940.020*
C90.18699 (6)0.3393 (4)0.32026 (9)0.0149 (3)
C100.13421 (6)0.4065 (4)0.26931 (9)0.0161 (3)
H100.11810.34780.21790.019*
C110.10550 (6)0.5593 (4)0.29426 (9)0.0158 (3)
H110.06940.60760.25960.019*
U11U22U33U12U13U23
Cl10.0176 (2)0.0184 (2)0.0213 (2)0.00078 (16)0.01348 (17)−0.00104 (16)
O10.0167 (6)0.0340 (8)0.0164 (6)0.0051 (5)0.0062 (5)−0.0024 (5)
O20.0182 (6)0.0350 (8)0.0279 (7)0.0118 (6)0.0125 (5)−0.0006 (6)
N10.0103 (7)0.0182 (7)0.0148 (6)0.0020 (6)0.0056 (6)−0.0004 (6)
N20.0130 (7)0.0168 (7)0.0157 (6)0.0005 (6)0.0071 (6)0.0011 (5)
N30.0148 (7)0.0186 (7)0.0213 (7)0.0018 (6)0.0103 (6)−0.0002 (6)
C10.0148 (8)0.0107 (8)0.0176 (7)−0.0025 (6)0.0094 (6)−0.0004 (6)
C20.0115 (8)0.0141 (8)0.0184 (8)−0.0007 (6)0.0079 (6)−0.0003 (6)
C30.0197 (8)0.0143 (8)0.0234 (8)0.0004 (7)0.0148 (7)0.0006 (6)
C40.0225 (9)0.0167 (8)0.0178 (8)−0.0018 (7)0.0128 (7)−0.0008 (6)
C50.0157 (8)0.0178 (9)0.0161 (7)−0.0009 (7)0.0073 (6)0.0013 (6)
C60.0145 (8)0.0104 (8)0.0178 (7)−0.0013 (6)0.0098 (6)0.0000 (6)
C70.0157 (8)0.0170 (8)0.0152 (7)−0.0004 (7)0.0082 (7)−0.0016 (6)
C80.0115 (8)0.0174 (8)0.0183 (8)0.0000 (6)0.0070 (6)−0.0001 (6)
C90.0168 (8)0.0114 (8)0.0206 (8)0.0000 (6)0.0129 (7)0.0004 (6)
C100.0163 (8)0.0158 (8)0.0149 (7)−0.0015 (6)0.0078 (6)−0.0006 (6)
C110.0129 (8)0.0148 (8)0.0169 (7)−0.0004 (6)0.0065 (6)0.0003 (6)
Cl1—C91.7400 (16)C4—C51.389 (2)
O1—N31.2408 (18)C4—H40.9500
O2—N31.2312 (18)C5—H50.9500
N1—C11.353 (2)C6—C111.393 (2)
N1—C61.412 (2)C6—C71.393 (2)
N1—H1n0.87 (2)C7—C81.387 (2)
N2—C51.327 (2)C7—H70.9500
N2—C11.346 (2)C8—C91.378 (2)
N3—C21.440 (2)C8—H80.9500
C1—C21.426 (2)C9—C101.386 (2)
C2—C31.389 (2)C10—C111.376 (2)
C3—C41.372 (2)C10—H100.9500
C3—H30.9500C11—H110.9500
C1—N1—C6131.43 (14)N2—C5—H5117.6
C1—N1—H1n113.1 (12)C4—C5—H5117.6
C6—N1—H1n115.4 (12)C11—C6—C7119.45 (15)
C5—N2—C1118.99 (14)C11—C6—N1114.64 (14)
O2—N3—O1121.71 (14)C7—C6—N1125.90 (14)
O2—N3—C2118.75 (13)C8—C7—C6119.47 (14)
O1—N3—C2119.54 (13)C8—C7—H7120.3
N2—C1—N1118.36 (14)C6—C7—H7120.3
N2—C1—C2119.48 (14)C9—C8—C7120.22 (15)
N1—C1—C2122.15 (14)C9—C8—H8119.9
C3—C2—C1120.01 (15)C7—C8—H8119.9
C3—C2—N3117.09 (14)C8—C9—C10120.84 (15)
C1—C2—N3122.88 (14)C8—C9—Cl1120.15 (13)
C4—C3—C2119.25 (15)C10—C9—Cl1119.02 (12)
C4—C3—H3120.4C11—C10—C9119.08 (15)
C2—C3—H3120.4C11—C10—H10120.5
C3—C4—C5117.45 (15)C9—C10—H10120.5
C3—C4—H4121.3C10—C11—C6120.93 (15)
C5—C4—H4121.3C10—C11—H11119.5
N2—C5—C4124.83 (15)C6—C11—H11119.5
C5—N2—C1—N1−178.05 (15)C1—N2—C5—C4−0.2 (3)
C5—N2—C1—C20.7 (2)C3—C4—C5—N2−0.2 (3)
C6—N1—C1—N2−4.5 (3)C1—N1—C6—C11175.03 (16)
C6—N1—C1—C2176.74 (16)C1—N1—C6—C7−6.0 (3)
N2—C1—C2—C3−0.7 (2)C11—C6—C7—C80.9 (2)
N1—C1—C2—C3177.97 (16)N1—C6—C7—C8−178.01 (15)
N2—C1—C2—N3177.63 (14)C6—C7—C8—C9−0.5 (3)
N1—C1—C2—N3−3.7 (3)C7—C8—C9—C10−0.3 (3)
O2—N3—C2—C34.2 (2)C7—C8—C9—Cl1179.57 (13)
O1—N3—C2—C3−176.53 (15)C8—C9—C10—C110.8 (2)
O2—N3—C2—C1−174.27 (15)Cl1—C9—C10—C11−179.10 (13)
O1—N3—C2—C15.0 (2)C9—C10—C11—C6−0.4 (3)
C1—C2—C3—C40.3 (3)C7—C6—C11—C10−0.4 (2)
N3—C2—C3—C4−178.19 (15)N1—C6—C11—C10178.60 (15)
C2—C3—C4—C50.2 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1n···O10.87 (2)1.91 (2)2.6280 (18)138.2 (17)
C7—H7···N20.952.312.909 (2)120
C3—H3···O2i0.952.483.340 (3)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1n⋯O10.87 (2)1.91 (2)2.6280 (18)138.2 (17)
C7—H7⋯N20.952.312.909 (2)120
C3—H3⋯O2i0.952.483.340 (3)152

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-(4-Methyl-phen-yl)-3-nitro-pyridin-2-amine.

Authors:  Mardia Aina Aznan Akhmad; Zanariah Abdullah; Zainal A Fairuz; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-25
  2 in total
  1 in total

1.  Crystal structure of a new monoclinic polymorph of N-(4-methyl-phen-yl)-3-nitro-pyridin-2-amine.

Authors:  Aina Mardia Akhmad Aznan; Zanariah Abdullah; Vannajan Sanghiran Lee; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-07-19
  1 in total

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