Literature DB >> 22199572

Poly[di-μ(2)-aqua-μ(5)-(pyridine-2,6-dicarboxyl-ato)-μ(3)-(pyridine-2,6-dicarboxyl-ato)-cobalt(II)disodium].

Alexander N Boyko, Irina A Golenya, Yulia A Izotova, Matti Haukka, Elena V Prisyazhnaya.   

Abstract

In the title compound, [CoNa(2)(C(7)H(3)NO(4))(2)(H(2)O)(2)](n), the Co(II) atom is coordinated by two pyridine N atoms and four carboxyl-ate O atoms from two doubly deprotonated pyridine-2,6-dicarboxyl-ate ligands in a distorted octa-hedral geometry. One Na(+) cation is coordinated by three carboxyl-ate O atoms and two water mol-ecules and the other is coordinated by five carboxyl-ate O atoms and two water mol-ecules in an irregular geometry. The bis-(pyridine-2,6-dicarboxyl-ato)cobalt complex units are connected by Na(+) cations and bridging water mol-ecules into a three-dimensional coordination network. O-H⋯O hydrogen bonds are formed between the water mol-ecules and the carboxyl-ate O atoms.

Entities:  

Year:  2011        PMID: 22199572      PMCID: PMC3238695          DOI: 10.1107/S1600536811048252

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrolytic decomposition of hydroxamate ligands upon complex formation, see: Dobosz et al. (1999 ▶); Świątek-Kozłowska et al. (2000 ▶). For related structures, see: Fritsky et al. (2001 ▶); Krämer & Fritsky (2000 ▶); Mokhir et al. (2002 ▶); Moroz et al. (2010 ▶); Sachse et al. (2008 ▶); Sliva et al. (1997 ▶); Wörl et al. (2005a ▶,b ▶). For the preparation of the ligand, see: Świątek-Kozłowska et al. (2002 ▶).

Experimental

Crystal data

[CoNa2(C7H3NO4)2(H2O)2] M = 471.15 Orthorhombic, a = 7.9540 (3) Å b = 13.2187 (3) Å c = 15.1475 (3) Å V = 1592.63 (8) Å3 Z = 4 Mo Kα radiation μ = 1.20 mm−1 T = 120 K 0.17 × 0.10 × 0.06 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.826, T max = 0.931 22979 measured reflections 3640 independent reflections 3388 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.054 S = 1.07 3640 reflections 264 parameters 1 restraint H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.32 e Å−3 Absolute structure: Flack (1983 ▶), 1749 Friedel pairs Flack parameter: 0.017 (10) Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811048252/hy2486sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811048252/hy2486Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CoNa2(C7H3NO4)2(H2O)2]F(000) = 948
Mr = 471.15Dx = 1.965 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 14413 reflections
a = 7.9540 (3) Åθ = 1.0–27.5°
b = 13.2187 (3) ŵ = 1.20 mm1
c = 15.1475 (3) ÅT = 120 K
V = 1592.63 (8) Å3Block, green-yellow
Z = 40.17 × 0.10 × 0.06 mm
Nonius KappaCCD diffractometer3640 independent reflections
Radiation source: fine-focus sealed tube3388 reflections with I > 2σ(I)
horizontally mounted graphite crystalRint = 0.037
Detector resolution: 9 pixels mm-1θmax = 27.5°, θmin = 3.1°
φ and ω scans with κ offseth = −10→10
Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997)k = −17→15
Tmin = 0.826, Tmax = 0.931l = −19→19
22979 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.023H-atom parameters constrained
wR(F2) = 0.054w = 1/[σ2(Fo2) + (0.0247P)2 + 0.349P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
3640 reflectionsΔρmax = 0.30 e Å3
264 parametersΔρmin = −0.32 e Å3
1 restraintAbsolute structure: Flack (1983), 1749 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.017 (10)
xyzUiso*/Ueq
Co1−0.05451 (3)−0.010675 (17)0.25557 (2)0.01076 (7)
Na1−0.07221 (11)0.28100 (6)0.49042 (5)0.01966 (19)
Na2−0.26548 (10)0.06445 (7)0.52208 (6)0.0212 (2)
O1−0.24152 (18)0.05370 (10)0.34732 (9)0.0146 (3)
O20.1115 (2)0.00400 (10)0.14651 (11)0.0163 (4)
O30.1244 (2)−0.00136 (10)0.36280 (10)0.0141 (3)
O4−0.21550 (19)−0.09844 (10)0.16519 (10)0.0158 (3)
O5−0.30854 (18)0.20122 (10)0.41058 (9)0.0162 (3)
O60.18157 (18)0.10750 (11)0.03583 (9)0.0183 (3)
O70.23230 (19)−0.09423 (11)0.47351 (9)0.0180 (3)
O8−0.2541 (2)−0.25677 (11)0.11508 (9)0.0188 (3)
O9−0.55522 (17)0.05090 (11)0.53885 (10)0.0160 (3)
H9A−0.59870.00120.51230.024*
H9B−0.61640.05610.58460.024*
O100.01645 (19)0.11758 (10)0.49835 (10)0.0164 (3)
H10A0.06290.08760.45410.025*
H10B0.07450.09490.54610.025*
N1−0.0691 (2)0.13931 (12)0.22358 (10)0.0109 (3)
N2−0.0236 (2)−0.15690 (12)0.29271 (11)0.0112 (3)
C1−0.1490 (2)0.20301 (14)0.27769 (12)0.0120 (4)
C2−0.2419 (2)0.14940 (15)0.35081 (13)0.0126 (4)
C3−0.1404 (2)0.30715 (14)0.26432 (15)0.0158 (4)
H3−0.19460.35270.30360.019*
C4−0.0503 (3)0.34270 (15)0.19181 (14)0.0153 (4)
H4−0.04290.41340.18120.018*
C50.0285 (3)0.27576 (16)0.13529 (14)0.0151 (4)
H50.08790.29920.08490.018*
C60.0182 (3)0.17334 (15)0.15435 (13)0.0121 (4)
C70.1110 (3)0.09008 (15)0.10677 (13)0.0136 (4)
C80.0704 (3)−0.17728 (16)0.36365 (13)0.0121 (4)
C90.1491 (3)−0.08438 (15)0.40480 (13)0.0136 (4)
C100.0974 (3)−0.27604 (15)0.39155 (14)0.0153 (4)
H100.1621−0.29000.44290.018*
C110.0270 (3)−0.35394 (15)0.34216 (13)0.0149 (4)
H110.0446−0.42220.35940.018*
C12−0.0685 (2)−0.33259 (14)0.26795 (15)0.0148 (4)
H12−0.1161−0.38540.23350.018*
C13−0.0928 (2)−0.23155 (14)0.24533 (14)0.0120 (4)
C14−0.1961 (3)−0.19475 (15)0.16881 (13)0.0131 (4)
U11U22U33U12U13U23
Co10.01387 (12)0.00901 (11)0.00941 (12)0.00019 (9)0.00036 (12)0.00034 (13)
Na10.0260 (5)0.0149 (4)0.0181 (4)−0.0034 (3)0.0049 (3)−0.0026 (3)
Na20.0140 (4)0.0243 (5)0.0251 (4)0.0016 (3)0.0007 (4)0.0109 (4)
O10.0164 (8)0.0128 (7)0.0147 (7)−0.0013 (6)0.0015 (6)0.0004 (6)
O20.0214 (9)0.0125 (8)0.0151 (9)0.0016 (6)0.0058 (7)0.0001 (6)
O30.0164 (9)0.0130 (8)0.0130 (9)−0.0006 (6)−0.0009 (7)−0.0006 (5)
O40.0194 (8)0.0142 (7)0.0137 (7)−0.0007 (6)−0.0030 (6)0.0014 (6)
O50.0180 (8)0.0181 (7)0.0124 (7)0.0024 (6)0.0024 (6)−0.0020 (6)
O60.0217 (8)0.0203 (8)0.0130 (7)−0.0022 (6)0.0057 (6)0.0004 (6)
O70.0194 (8)0.0201 (8)0.0145 (8)0.0017 (6)−0.0067 (6)−0.0003 (6)
O80.0254 (8)0.0168 (8)0.0141 (7)−0.0049 (6)−0.0050 (6)−0.0016 (6)
O90.0162 (7)0.0137 (7)0.0181 (7)−0.0016 (6)0.0037 (6)−0.0029 (6)
O100.0184 (8)0.0186 (7)0.0120 (7)0.0018 (6)−0.0001 (6)−0.0010 (6)
N10.0121 (9)0.0111 (8)0.0095 (7)0.0003 (7)−0.0010 (6)−0.0010 (6)
N20.0117 (8)0.0112 (8)0.0108 (8)0.0002 (7)0.0008 (6)0.0001 (6)
C10.0104 (9)0.0138 (9)0.0118 (10)0.0012 (8)−0.0021 (7)−0.0012 (7)
C20.0118 (10)0.0154 (10)0.0106 (9)0.0019 (8)−0.0016 (8)−0.0011 (8)
C30.0164 (9)0.0128 (8)0.0180 (11)0.0029 (7)−0.0012 (9)−0.0014 (9)
C40.0182 (11)0.0090 (9)0.0185 (10)0.0005 (8)−0.0042 (8)0.0049 (8)
C50.0162 (11)0.0169 (10)0.0123 (10)−0.0014 (8)−0.0024 (8)0.0045 (8)
C60.0115 (10)0.0136 (10)0.0114 (10)−0.0008 (8)−0.0011 (8)−0.0006 (8)
C70.0121 (10)0.0163 (10)0.0125 (10)−0.0029 (8)−0.0009 (8)−0.0016 (8)
C80.0105 (11)0.0145 (10)0.0111 (10)0.0005 (7)0.0029 (7)0.0008 (8)
C90.0112 (10)0.0160 (10)0.0137 (10)0.0021 (8)0.0023 (8)0.0001 (8)
C100.0152 (10)0.0158 (11)0.0150 (10)0.0030 (8)0.0025 (8)0.0040 (8)
C110.0165 (11)0.0116 (10)0.0167 (10)0.0039 (8)0.0025 (8)0.0040 (8)
C120.0167 (10)0.0115 (8)0.0163 (11)−0.0002 (7)0.0064 (8)−0.0033 (8)
C130.0124 (9)0.0128 (8)0.0108 (10)0.0001 (7)0.0029 (8)−0.0025 (8)
C140.0134 (10)0.0140 (9)0.0119 (9)−0.0006 (8)0.0038 (8)0.0036 (8)
Co1—N22.0281 (16)O9—H9A0.8440
Co1—N12.0443 (17)O9—H9B0.8492
Co1—O22.1235 (17)O10—H10A0.8618
Co1—O32.1631 (17)O10—H10B0.9091
Co1—O42.2044 (15)N1—C61.336 (3)
Co1—O12.2065 (14)N1—C11.336 (2)
Na1—O102.2757 (16)N2—C81.337 (3)
Na1—O9i2.3439 (16)N2—C131.339 (2)
Na1—O8ii2.3924 (16)C1—C31.393 (3)
Na1—O5i2.4324 (16)C1—C21.508 (3)
Na1—O52.4715 (16)C3—C41.393 (3)
Na2—O92.3254 (16)C3—H30.9500
Na2—O102.3772 (17)C4—C51.382 (3)
Na2—O6iii2.3780 (17)C4—H40.9500
Na2—O2iii2.4232 (18)C5—C61.387 (3)
Na2—O52.4978 (16)C5—H50.9500
Na2—O12.6579 (17)C6—C71.508 (3)
Na2—O8ii2.7557 (17)C8—C101.389 (3)
O1—C21.266 (2)C8—C91.513 (3)
O2—C71.287 (2)C10—C111.391 (3)
O3—C91.284 (2)C10—H100.9500
O4—C141.284 (2)C11—C121.386 (3)
O5—C21.253 (2)C11—H110.9500
O6—C71.234 (2)C12—C131.392 (3)
O7—C91.240 (2)C12—H120.9500
O8—C141.244 (2)C13—C141.502 (3)
N2—Co1—N1175.53 (7)C14—O8—Na2vi151.48 (14)
N2—Co1—O2103.15 (6)Na1vi—O8—Na2vi78.94 (5)
N1—Co1—O276.24 (6)Na2—O9—Na1v87.13 (5)
N2—Co1—O376.47 (6)Na2—O9—H9A114.5
N1—Co1—O399.21 (6)Na1v—O9—H9A124.4
O2—Co1—O399.78 (5)Na2—O9—H9B130.6
N2—Co1—O475.00 (6)Na1v—O9—H9B98.4
N1—Co1—O4109.28 (6)H9A—O9—H9B102.5
O2—Co1—O485.76 (6)Na1—O10—Na289.78 (6)
O3—Co1—O4151.46 (5)Na1—O10—H10A121.9
N2—Co1—O1105.94 (6)Na2—O10—H10A112.7
N1—Co1—O174.76 (6)Na1—O10—H10B120.8
O2—Co1—O1150.91 (5)Na2—O10—H10B105.1
O3—Co1—O187.05 (6)H10A—O10—H10B104.4
O4—Co1—O1101.68 (5)C6—N1—C1121.13 (17)
O10—Na1—O9i149.94 (7)C6—N1—Co1118.90 (13)
O10—Na1—O8ii86.51 (6)C1—N1—Co1119.52 (13)
O9i—Na1—O8ii89.09 (5)C8—N2—C13120.84 (17)
O10—Na1—O5i81.42 (6)C8—N2—Co1118.88 (14)
O9i—Na1—O5i90.82 (5)C13—N2—Co1120.26 (13)
O8ii—Na1—O5i155.57 (6)N1—C1—C3120.67 (17)
O10—Na1—O581.75 (5)N1—C1—C2112.81 (17)
O9i—Na1—O5126.98 (6)C3—C1—C2126.53 (17)
O8ii—Na1—O581.84 (5)O5—C2—O1125.27 (18)
O5i—Na1—O5116.98 (6)O5—C2—C1118.75 (17)
O9—Na2—O10166.94 (6)O1—C2—C1115.96 (17)
O9—Na2—O6iii101.24 (6)C1—C3—C4118.24 (18)
O10—Na2—O6iii91.77 (5)C1—C3—H3120.9
O9—Na2—O2iii112.79 (7)C4—C3—H3120.9
O10—Na2—O2iii75.58 (6)C5—C4—C3120.39 (19)
O6iii—Na2—O2iii55.47 (5)C5—C4—H4119.8
O9—Na2—O589.64 (6)C3—C4—H4119.8
O10—Na2—O579.24 (5)C4—C5—C6118.01 (19)
O6iii—Na2—O5142.14 (6)C4—C5—H5121.0
O2iii—Na2—O5149.95 (6)C6—C5—H5121.0
O9—Na2—O1100.12 (6)N1—C6—C5121.52 (19)
O10—Na2—O178.32 (5)N1—C6—C7112.57 (17)
O6iii—Na2—O190.91 (5)C5—C6—C7125.74 (19)
O2iii—Na2—O1135.93 (6)O6—C7—O2124.80 (19)
O5—Na2—O151.32 (4)O6—C7—C6120.17 (18)
O9—Na2—O8ii93.80 (6)O2—C7—C6115.02 (17)
O10—Na2—O8ii76.74 (5)N2—C8—C10121.37 (19)
O6iii—Na2—O8ii139.38 (6)N2—C8—C9113.53 (17)
O2iii—Na2—O8ii83.92 (6)C10—C8—C9125.01 (19)
O5—Na2—O8ii74.50 (5)O7—C9—O3125.97 (19)
O1—Na2—O8ii123.43 (5)O7—C9—C8118.77 (18)
C7iii—Na2—O8ii112.28 (6)O3—C9—C8115.24 (17)
C2—O1—Co1114.40 (12)C8—C10—C11118.04 (19)
C2—O1—Na284.54 (11)C8—C10—H10121.0
Co1—O1—Na2134.13 (6)C11—C10—H10121.0
C7—O2—Co1116.28 (13)C12—C11—C10120.42 (18)
C7—O2—Na2iv88.16 (12)C12—C11—H11119.8
Co1—O2—Na2iv152.28 (7)C10—C11—H11119.8
C9—O3—Co1115.10 (13)C11—C12—C13118.10 (19)
C14—O4—Co1115.19 (13)C11—C12—H12121.0
C2—O5—Na1v140.98 (13)C13—C12—H12121.0
C2—O5—Na1105.37 (12)N2—C13—C12121.21 (18)
Na1v—O5—Na1111.79 (6)N2—C13—C14113.58 (16)
C2—O5—Na292.00 (12)C12—C13—C14125.21 (18)
Na1v—O5—Na281.48 (5)O8—C14—O4125.53 (19)
Na1—O5—Na282.74 (5)O8—C14—C13119.63 (17)
C7—O6—Na2iv91.47 (12)O4—C14—C13114.84 (17)
C14—O8—Na1vi126.37 (13)
D—H···AD—HH···AD···AD—H···A
O9—H9A···O7vii0.841.942.742 (2)159
O9—H9B···O4viii0.851.902.717 (2)162
O10—H10A···O30.861.882.725 (2)166
O10—H10B···O4iii0.912.122.993 (2)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O9—H9A⋯O7i0.841.942.742 (2)159
O9—H9B⋯O4ii0.851.902.717 (2)162
O10—H10A⋯O30.861.882.725 (2)166
O10—H10B⋯O4iii0.912.122.993 (2)159

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  Synthesis, structure and magnetism of a new ferromagnetic hexanuclear nickel cluster with a dicubane-like core.

Authors:  Stefan Wörl; Hans Pritzkow; Igor O Fritsky; Roland Krämer
Journal:  Dalton Trans       Date:  2004-11-18       Impact factor: 4.390

2.  An allosteric synthetic catalyst: metal ions tune the activity of an artificial phosphodiesterase.

Authors:  I O Fritsky; R Ott; H Pritzkow; R Krämer
Journal:  Chemistry       Date:  2001-03-16       Impact factor: 5.236

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  One-pot synthesis of a new magnetically coupled heterometallic Cu(2)Mn(2) [2 x 2] molecular grid.

Authors:  Yurii S Moroz; Łukasz Szyrwiel; Serhiy Demeshko; Henryk Kozłowski; Franc Meyer; Igor O Fritsky
Journal:  Inorg Chem       Date:  2010-06-07       Impact factor: 5.165

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.