Literature DB >> 22199559

Undeca-carbonyl-μ(2)-methane-thiol-ato-μ(2)-[(pyridin-2-yl)methane-thiol-ato]-μ(4)-sulfido-tetra-iron(II)(2 Fe-Fe).

Yao-Cheng Shi, Liang Lai, Wen-Bin Shen, Li-Min Yuan.   

Abstract

The title compound, [Fe(4)(C(6)H(6)NS)(CH(3)S)S(CO)(11)], com-prises two butterfly-shaped sub-cluster cores, Fe(2)S(2)N and Fe(2)S(2), joined together by a spiro-type μ(4)-S atom. The (pyridin-2-yl)methane-thiol-ate ligand is attached to the Fe(2)(CO)(5) unit in a μ-κN:κ(2)S mode, and the methane-thiol-ate ligand is coordinated to the Fe(2)(CO)(6) unit in a μ-κ(2)S fashion.

Entities:  

Year:  2011        PMID: 22199559      PMCID: PMC3238668          DOI: 10.1107/S1600536811047751

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to iron–carbonyl clusters, see: Capon et al. (2009 ▶); Tard & Pickett (2009 ▶); Gloaguen & Rauchfuss (2009 ▶); DuBois & DuBois (2009 ▶). For the syntheses of μ4-S atom-containing Fe2(CO)6 butterfly-shaped complexes, see: Song (2005 ▶); Wang et al. (2000 ▶). For related structures, see: Song et al. (2000 ▶, 2002 ▶).

Experimental

Crystal data

[Fe4(C6H6NS)(CH3S)S(CO)11] M = 734.87 Monoclinic, a = 9.1253 (3) Å b = 28.9515 (15) Å c = 10.0376 (11) Å β = 98.3238 (12)° V = 2623.9 (3) Å3 Z = 4 Mo Kα radiation μ = 2.46 mm−1 T = 296 K 0.19 × 0.16 × 0.15 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.628, T max = 0.684 22650 measured reflections 6151 independent reflections 4914 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.093 S = 1.19 6151 reflections 335 parameters H-atom parameters constrained Δρmax = 0.45 e Å−3 Δρmin = −0.50 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT-Plus (Bruker, 2003 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXTL (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and WinGX (Farrugia, 1999 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811047751/tk5011sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811047751/tk5011Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Fe4(C6H6NS)(CH3S)S(CO)11]F(000) = 1456
Mr = 734.87Dx = 1.860 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4914 reflections
a = 9.1253 (3) Åθ = 2.2–27.9°
b = 28.9515 (15) ŵ = 2.46 mm1
c = 10.0376 (11) ÅT = 296 K
β = 98.3238 (12)°Block, red
V = 2623.9 (3) Å30.19 × 0.16 × 0.15 mm
Z = 4
Bruker SMART APEX CCD diffractometer6151 independent reflections
Radiation source: fine-focus sealed tube4914 reflections with I > 2σ(I)
graphiteRint = 0.032
ω and φ scansθmax = 27.8°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −11→11
Tmin = 0.628, Tmax = 0.684k = −36→37
22650 measured reflectionsl = −12→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093H-atom parameters constrained
S = 1.19w = 1/[σ2(Fo2) + (0.P)2 + 7.4281P] where P = (Fo2 + 2Fc2)/3
6151 reflections(Δ/σ)max < 0.001
335 parametersΔρmax = 0.45 e Å3
0 restraintsΔρmin = −0.50 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3087 (6)0.1314 (2)−0.0125 (5)0.0612 (15)
C20.1355 (7)0.1881 (2)0.1127 (5)0.0654 (16)
C30.1362 (6)0.0911 (2)0.1218 (5)0.0624 (15)
C40.6043 (5)0.09347 (17)0.4471 (5)0.0459 (11)
C50.3874 (5)0.04298 (17)0.3159 (5)0.0454 (11)
C60.2725 (5)0.23874 (17)0.4290 (5)0.0473 (11)
C70.4244 (6)0.17741 (18)0.6064 (5)0.0492 (12)
C80.1887 (6)0.20957 (17)0.6739 (5)0.0522 (12)
C90.0277 (5)0.1125 (2)0.6643 (5)0.0543 (13)
C100.2578 (6)0.07232 (18)0.5986 (5)0.0492 (12)
C11−0.0013 (6)0.06344 (19)0.4274 (6)0.0553 (13)
C12−0.1349 (6)0.1994 (2)0.5184 (6)0.0664 (16)
H12A−0.23170.18810.48370.100*
H12B−0.13300.23240.50890.100*
H12C−0.11160.19140.61190.100*
C130.6172 (6)0.16550 (17)0.1184 (6)0.0591 (15)
H13A0.58470.18280.03680.071*
H13B0.71060.17850.16010.071*
C140.6407 (5)0.11606 (17)0.0822 (5)0.0463 (11)
C150.7145 (6)0.1058 (2)−0.0263 (5)0.0627 (15)
H150.74580.1294−0.07820.075*
C160.7408 (6)0.0605 (2)−0.0560 (6)0.0666 (16)
H160.78930.0530−0.12840.080*
C170.6937 (6)0.0267 (2)0.0236 (6)0.0659 (16)
H170.7109−0.00430.00620.079*
C180.6214 (5)0.03872 (17)0.1287 (5)0.0510 (12)
H180.59200.01530.18230.061*
Fe10.25779 (7)0.13887 (2)0.14905 (6)0.04061 (16)
Fe20.46539 (6)0.09889 (2)0.30222 (6)0.03290 (14)
Fe30.24023 (7)0.18660 (2)0.52126 (6)0.03460 (15)
Fe40.11363 (7)0.10806 (2)0.51490 (6)0.03607 (15)
N10.5907 (4)0.08240 (13)0.1587 (4)0.0406 (9)
O10.3419 (5)0.1255 (2)−0.1178 (4)0.1053 (19)
O20.0599 (6)0.21896 (19)0.0902 (5)0.114 (2)
O30.0630 (6)0.05878 (19)0.1038 (5)0.1026 (17)
O40.6892 (4)0.08923 (15)0.5427 (4)0.0741 (12)
O50.3306 (5)0.00851 (13)0.3287 (5)0.0763 (12)
O60.2891 (5)0.27134 (13)0.3701 (4)0.0717 (12)
O70.5400 (4)0.17148 (16)0.6638 (4)0.0743 (12)
O80.1601 (5)0.22297 (15)0.7736 (4)0.0820 (13)
O9−0.0211 (5)0.11492 (18)0.7626 (4)0.0858 (14)
O100.3524 (5)0.05028 (16)0.6518 (4)0.0795 (13)
O11−0.0745 (5)0.03477 (16)0.3740 (5)0.0909 (15)
S10.48087 (14)0.17202 (4)0.23270 (12)0.0434 (3)
S20.26921 (11)0.13019 (3)0.37332 (9)0.0301 (2)
S30.00216 (12)0.17347 (4)0.42431 (12)0.0420 (3)
U11U22U33U12U13U23
C10.048 (3)0.090 (4)0.045 (3)0.015 (3)0.005 (2)0.003 (3)
C20.072 (4)0.078 (4)0.046 (3)0.029 (3)0.011 (3)0.010 (3)
C30.056 (3)0.082 (4)0.046 (3)0.003 (3)−0.002 (2)−0.012 (3)
C40.038 (2)0.048 (3)0.054 (3)0.002 (2)0.014 (2)0.006 (2)
C50.046 (3)0.042 (3)0.052 (3)0.006 (2)0.017 (2)−0.002 (2)
C60.051 (3)0.044 (3)0.049 (3)0.000 (2)0.015 (2)−0.005 (2)
C70.046 (3)0.055 (3)0.047 (3)−0.008 (2)0.009 (2)−0.010 (2)
C80.066 (3)0.043 (3)0.047 (3)0.009 (2)0.007 (2)−0.004 (2)
C90.043 (3)0.071 (4)0.051 (3)0.004 (3)0.016 (2)0.008 (3)
C100.051 (3)0.051 (3)0.049 (3)0.000 (2)0.019 (2)0.011 (2)
C110.049 (3)0.057 (3)0.060 (3)−0.005 (3)0.009 (2)0.007 (3)
C120.046 (3)0.077 (4)0.082 (4)0.021 (3)0.026 (3)0.002 (3)
C130.070 (4)0.046 (3)0.073 (4)0.000 (3)0.048 (3)0.009 (3)
C140.041 (2)0.052 (3)0.050 (3)−0.002 (2)0.020 (2)0.001 (2)
C150.068 (4)0.072 (4)0.057 (3)−0.010 (3)0.040 (3)−0.002 (3)
C160.064 (4)0.084 (4)0.060 (3)−0.011 (3)0.035 (3)−0.017 (3)
C170.060 (3)0.061 (4)0.084 (4)0.002 (3)0.035 (3)−0.023 (3)
C180.050 (3)0.045 (3)0.062 (3)0.012 (2)0.020 (2)0.002 (2)
Fe10.0455 (4)0.0488 (4)0.0281 (3)0.0108 (3)0.0070 (3)0.0025 (3)
Fe20.0319 (3)0.0332 (3)0.0354 (3)0.0025 (3)0.0108 (2)0.0028 (2)
Fe30.0368 (3)0.0362 (3)0.0321 (3)0.0000 (3)0.0092 (2)−0.0026 (3)
Fe40.0322 (3)0.0404 (4)0.0369 (3)−0.0024 (3)0.0095 (2)0.0050 (3)
N10.0370 (19)0.044 (2)0.043 (2)0.0056 (17)0.0139 (16)0.0025 (17)
O10.092 (3)0.195 (6)0.031 (2)0.030 (4)0.017 (2)−0.013 (3)
O20.141 (5)0.116 (4)0.082 (3)0.084 (4)0.005 (3)0.023 (3)
O30.099 (4)0.106 (4)0.097 (4)−0.039 (3)−0.005 (3)−0.024 (3)
O40.050 (2)0.095 (3)0.071 (3)0.008 (2)−0.015 (2)0.015 (2)
O50.089 (3)0.041 (2)0.106 (3)−0.012 (2)0.038 (3)−0.003 (2)
O60.100 (3)0.048 (2)0.072 (3)−0.001 (2)0.027 (2)0.014 (2)
O70.043 (2)0.100 (3)0.074 (3)−0.002 (2)−0.0098 (19)−0.012 (2)
O80.118 (4)0.085 (3)0.046 (2)0.024 (3)0.024 (2)−0.017 (2)
O90.075 (3)0.133 (4)0.058 (2)−0.004 (3)0.038 (2)0.008 (3)
O100.067 (3)0.093 (3)0.077 (3)0.027 (2)0.009 (2)0.041 (2)
O110.086 (3)0.078 (3)0.103 (4)−0.035 (3)−0.005 (3)−0.014 (3)
S10.0511 (7)0.0349 (6)0.0489 (7)−0.0006 (5)0.0225 (5)0.0025 (5)
S20.0304 (5)0.0326 (5)0.0282 (5)0.0010 (4)0.0069 (4)0.0013 (4)
S30.0349 (6)0.0500 (7)0.0420 (6)0.0060 (5)0.0083 (5)0.0020 (5)
C1—O11.153 (6)C13—C141.500 (7)
C1—Fe11.764 (5)C13—S11.820 (5)
C2—O21.132 (6)C13—H13A0.9700
C2—Fe11.814 (6)C13—H13B0.9700
C3—O31.150 (7)C14—N11.360 (6)
C3—Fe11.768 (6)C14—C151.393 (6)
C4—O41.150 (6)C15—C161.372 (8)
C4—Fe21.792 (5)C15—H150.9300
C5—O51.140 (6)C16—C171.372 (8)
C5—Fe21.781 (5)C16—H160.9300
C6—O61.135 (6)C17—C181.368 (7)
C6—Fe31.817 (5)C17—H170.9300
C7—O71.140 (6)C18—N11.339 (6)
C7—Fe31.791 (5)C18—H180.9300
C8—O81.138 (6)Fe1—Fe22.5394 (9)
C8—Fe31.795 (5)Fe1—S12.2968 (14)
C9—O91.142 (6)Fe1—S22.2525 (11)
C9—Fe41.794 (5)Fe2—S12.2401 (13)
C10—O101.142 (6)Fe2—N12.022 (3)
C10—Fe41.785 (5)Fe2—S22.2148 (11)
C11—O111.148 (6)Fe3—Fe42.5473 (9)
C11—Fe41.809 (6)Fe3—S22.2485 (12)
C12—S31.834 (5)Fe3—S32.2801 (13)
C12—H12A0.9600Fe4—S22.2428 (11)
C12—H12B0.9600Fe4—S32.2761 (13)
C12—H12C0.9600
O1—C1—Fe1178.5 (6)C4—Fe2—S2106.51 (15)
O2—C2—Fe1179.6 (7)N1—Fe2—S2153.28 (11)
O3—C3—Fe1176.7 (6)C5—Fe2—S1157.93 (16)
O4—C4—Fe2177.3 (5)C4—Fe2—S1105.45 (16)
O5—C5—Fe2175.5 (4)N1—Fe2—S186.20 (11)
O6—C6—Fe3178.3 (5)S2—Fe2—S178.70 (4)
O7—C7—Fe3178.1 (5)C5—Fe2—Fe1100.93 (16)
O8—C8—Fe3177.2 (5)C4—Fe2—Fe1155.39 (16)
O9—C9—Fe4177.0 (5)N1—Fe2—Fe197.22 (11)
O10—C10—Fe4178.4 (5)S2—Fe2—Fe156.06 (3)
O11—C11—Fe4178.7 (5)S1—Fe2—Fe157.03 (4)
S3—C12—H12A109.5C7—Fe3—C889.5 (2)
S3—C12—H12B109.5C7—Fe3—C699.0 (2)
H12A—C12—H12B109.5C8—Fe3—C6102.1 (2)
S3—C12—H12C109.5C7—Fe3—S290.87 (16)
H12A—C12—H12C109.5C8—Fe3—S2154.62 (17)
H12B—C12—H12C109.5C6—Fe3—S2102.91 (15)
C14—C13—S1112.8 (3)C7—Fe3—S3161.59 (17)
C14—C13—H13A109.0C8—Fe3—S394.30 (18)
S1—C13—H13A109.0C6—Fe3—S397.79 (16)
C14—C13—H13B109.0S2—Fe3—S378.05 (4)
S1—C13—H13B109.0C7—Fe3—Fe4105.66 (17)
H13A—C13—H13B107.8C8—Fe3—Fe4100.27 (17)
N1—C14—C15121.9 (5)C6—Fe3—Fe4146.63 (16)
N1—C14—C13118.4 (4)S2—Fe3—Fe455.34 (3)
C15—C14—C13119.7 (4)S3—Fe3—Fe455.93 (4)
C16—C15—C14119.6 (5)C10—Fe4—C991.7 (2)
C16—C15—H15120.2C10—Fe4—C1198.7 (2)
C14—C15—H15120.2C9—Fe4—C1199.4 (2)
C15—C16—C17118.4 (5)C10—Fe4—S288.43 (15)
C15—C16—H16120.8C9—Fe4—S2154.46 (19)
C17—C16—H16120.8C11—Fe4—S2105.78 (17)
C18—C17—C16119.5 (5)C10—Fe4—S3157.89 (17)
C18—C17—H17120.2C9—Fe4—S392.88 (18)
C16—C17—H17120.2C11—Fe4—S3101.88 (17)
N1—C18—C17123.7 (5)S2—Fe4—S378.25 (4)
N1—C18—H18118.2C10—Fe4—Fe3101.82 (17)
C17—C18—H18118.2C9—Fe4—Fe399.59 (18)
C1—Fe1—C390.3 (3)C11—Fe4—Fe3151.45 (17)
C1—Fe1—C298.5 (2)S2—Fe4—Fe355.55 (3)
C3—Fe1—C2103.2 (3)S3—Fe4—Fe356.08 (4)
C1—Fe1—S2157.68 (18)C18—N1—C14116.8 (4)
C3—Fe1—S290.26 (18)C18—N1—Fe2122.8 (3)
C2—Fe1—S2103.12 (17)C14—N1—Fe2120.3 (3)
C1—Fe1—S192.86 (19)C13—S1—Fe2100.25 (17)
C3—Fe1—S1152.38 (19)C13—S1—Fe1112.1 (2)
C2—Fe1—S1103.4 (2)Fe2—S1—Fe168.06 (4)
S2—Fe1—S176.76 (4)Fe2—S2—Fe4134.64 (5)
C1—Fe1—Fe2103.19 (17)Fe2—S2—Fe3133.46 (5)
C3—Fe1—Fe297.69 (19)Fe2—S2—Fe169.28 (4)
C2—Fe1—Fe2149.67 (19)Fe4—S2—Fe369.11 (4)
S2—Fe1—Fe254.66 (3)Fe4—S2—Fe1136.32 (5)
S1—Fe1—Fe254.91 (4)Fe3—S2—Fe1125.89 (5)
C5—Fe2—C495.8 (2)C12—S3—Fe4115.7 (2)
C5—Fe2—N196.52 (18)C12—S3—Fe3113.0 (2)
C4—Fe2—N198.67 (18)Fe4—S3—Fe367.98 (4)
C5—Fe2—S289.81 (15)
Table 1

Selected bond lengths (Å)

Fe1—Fe22.5394 (9)
Fe1—S12.2968 (14)
Fe1—S22.2525 (11)
Fe2—S12.2401 (13)
Fe2—N12.022 (3)
Fe2—S22.2148 (11)
Fe3—Fe42.5473 (9)
Fe3—S22.2485 (12)
Fe3—S32.2801 (13)
Fe4—S22.2428 (11)
Fe4—S32.2761 (13)
  7 in total

1.  Investigations on butterfly Fe/S cluster S-centered anions (mu-S-)2Fe2(CO)6, (mu-S-)(mu-RS)Fe2(CO)6, and related species.

Authors:  Li-Cheng Song
Journal:  Acc Chem Res       Date:  2005-01       Impact factor: 22.384

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Structural and functional analogues of the active sites of the [Fe]-, [NiFe]-, and [FeFe]-hydrogenases.

Authors:  Cédric Tard; Christopher J Pickett
Journal:  Chem Rev       Date:  2009-06       Impact factor: 60.622

4.  The first example of macrocycles containing butterfly transition metal cluster cores via novel tandem reactions.

Authors:  Li-Cheng Song; Hong-Tao Fan; Qing-Mei Hu
Journal:  J Am Chem Soc       Date:  2002-05-01       Impact factor: 15.419

Review 5.  The roles of the first and second coordination spheres in the design of molecular catalysts for H2 production and oxidation.

Authors:  M Rakowski DuBois; Daniel L DuBois
Journal:  Chem Soc Rev       Date:  2008-11-06       Impact factor: 54.564

Review 6.  Small molecule mimics of hydrogenases: hydrides and redox.

Authors:  Frédéric Gloaguen; Thomas B Rauchfuss
Journal:  Chem Soc Rev       Date:  2008-10-31       Impact factor: 54.564

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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