Literature DB >> 22199534

Poly[[hexa-aqua-(μ(2)-oxalato-κO,O:O,O)bis-(μ(3)-pyridine-2,4-dicarboxyl-ato-κN,O:O:O)dilanthanum(III)] monohydrate].

Fwu Ming Shen, Shie Fu Lush.   

Abstract

In the polymeric title compound, {[La(2)(C(7)H(3)NO(4))(2)(C(2)O(4))(H(2)O)(6)]·H(2)O}(n), the La(3+) cation is nine-coordinated in a distorted LaNO(8) tricapped trigonal-prismatic geometry formed by three pyridinedicarboxylate anions, one oxalate anion and three water mol-ecules. The oxalate anion is located on an inversion center. The oxalate and pyridine-dicarboxyl-ate anions bridge the La(3+) cations, forming a two-dimensional polymeric complex parallel to (010). Inter-molecular O-H⋯O hydrogen bonding and weak C-H⋯O hydrogen bonding is present in the crystal structure and π-π stacking [centroid-centroid distance = 3.571 (3) Å] is observed between parallel pyridine rings of adjacent mol-ecules. The uncoordinated water molecule shows an occupancy of 0.5.

Entities:  

Year:  2011        PMID: 22199534      PMCID: PMC3238643          DOI: 10.1107/S160053681104668X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Aghabozorg et al. (2011 ▶); Li et al. (2007 ▶); Wang et al. (2009 ▶).

Experimental

Crystal data

[La2(C7H3NO4)2(C2O4)(H2O)6]·H2O M = 822.16 Triclinic, a = 6.4614 (8) Å b = 6.6844 (8) Å c = 14.0796 (17) Å α = 89.735 (2)° β = 85.266 (2)° γ = 73.135 (2)° V = 579.85 (12) Å3 Z = 1 Mo Kα radiation μ = 3.73 mm−1 T = 295 K 0.30 × 0.10 × 0.10 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.686, T max = 0.950 5023 measured reflections 2046 independent reflections 1795 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.093 S = 1.09 2046 reflections 175 parameters H-atom parameters constrained Δρmax = 2.14 e Å−3 Δρmin = −2.13 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681104668X/xu5376sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681104668X/xu5376Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[La2(C7H3NO4)2(C2O4)(H2O)6]·H2OZ = 1
Mr = 822.16F(000) = 396
Triclinic, P1Dx = 2.355 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.4614 (8) ÅCell parameters from 3390 reflections
b = 6.6844 (8) Åθ = 2.5–25.0°
c = 14.0796 (17) ŵ = 3.73 mm1
α = 89.735 (2)°T = 295 K
β = 85.266 (2)°Columnar, brown
γ = 73.135 (2)°0.30 × 0.10 × 0.10 mm
V = 579.85 (12) Å3
Bruker SMART 1000 CCD area-detector diffractometer2046 independent reflections
Radiation source: fine-focus sealed tube1795 reflections with I > 2σ(I)
graphiteRint = 0.035
Detector resolution: 9 pixels mm-1θmax = 25.0°, θmin = 1.5°
φ and ω scansh = −7→7
Absorption correction: multi-scan (SADABS; Bruker, 2001)k = −7→7
Tmin = 0.686, Tmax = 0.950l = −16→16
5023 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0639P)2] where P = (Fo2 + 2Fc2)/3
2046 reflections(Δ/σ)max = 0.001
175 parametersΔρmax = 2.14 e Å3
0 restraintsΔρmin = −2.13 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
La10.36051 (5)0.32815 (5)0.80389 (2)0.0265 (1)
O10.7674 (8)0.3427 (7)0.2806 (3)0.0392 (16)
O21.0913 (8)0.2154 (8)0.3384 (3)0.0525 (19)
O31.0788 (7)0.2730 (8)0.6993 (3)0.0396 (16)
O40.7592 (7)0.3177 (9)0.7799 (3)0.0521 (18)
O50.5103 (8)0.2478 (6)0.9657 (3)0.0423 (14)
O60.5841 (9)0.3677 (7)1.1030 (3)0.0485 (18)
O7−0.0071 (10)0.5171 (10)0.8990 (5)0.0863 (19)
O80.5618 (9)−0.0608 (7)0.7835 (4)0.0542 (19)
O90.1731 (10)0.0871 (10)0.9025 (5)0.0863 (19)
N10.5725 (7)0.2598 (7)0.6261 (3)0.0249 (14)
C10.7769 (9)0.2729 (9)0.6137 (4)0.0257 (17)
C20.5722 (10)0.2408 (9)0.4559 (4)0.0294 (17)
C30.7801 (9)0.2612 (8)0.4439 (4)0.0260 (17)
C40.8843 (9)0.2739 (9)0.5250 (4)0.0285 (17)
C50.4771 (9)0.2395 (9)0.5474 (4)0.0291 (17)
C60.8914 (10)0.2739 (9)0.3464 (4)0.0301 (17)
C70.8804 (10)0.2893 (10)0.7040 (4)0.0341 (19)
C80.5274 (10)0.3885 (9)1.0197 (4)0.0288 (17)
O10−0.1015 (18)−0.0885 (16)0.9137 (11)0.072 (5)0.500
H2A0.498100.228200.403400.0350*
H4A1.025700.283000.519600.0340*
H5A0.338500.223400.554700.0350*
H7A−0.084700.477400.862700.0800*
H7B−0.052500.647200.899000.0800*
H8A0.67010−0.118900.747000.0800*
H8B0.55880−0.189600.813400.0800*
H9A0.29540−0.013200.890800.0800*
H9B0.074500.052800.875800.0800*
H10A−0.22390−0.019800.899100.0800*0.500
H10B−0.11240−0.068700.973600.0800*0.500
U11U22U33U12U13U23
La10.0283 (2)0.0378 (2)0.0187 (2)−0.0182 (2)−0.0020 (1)0.0042 (1)
O10.043 (3)0.047 (3)0.025 (2)−0.009 (2)−0.004 (2)0.0078 (19)
O20.033 (3)0.074 (4)0.039 (3)−0.001 (2)0.009 (2)0.014 (2)
O30.028 (2)0.060 (3)0.038 (3)−0.022 (2)−0.0100 (19)0.002 (2)
O40.037 (3)0.112 (4)0.023 (2)−0.046 (3)−0.005 (2)0.007 (2)
O50.067 (3)0.029 (2)0.032 (2)−0.013 (2)−0.015 (2)0.0013 (19)
O60.079 (4)0.038 (2)0.036 (3)−0.022 (2)−0.030 (3)0.013 (2)
O70.059 (3)0.072 (3)0.113 (4)−0.008 (2)0.037 (3)0.026 (3)
O80.071 (4)0.034 (3)0.053 (3)−0.016 (2)0.023 (3)0.001 (2)
O90.059 (3)0.072 (3)0.113 (4)−0.008 (2)0.037 (3)0.026 (3)
N10.020 (2)0.029 (2)0.027 (3)−0.0093 (19)−0.0018 (19)0.002 (2)
C10.018 (3)0.029 (3)0.031 (3)−0.008 (2)−0.003 (2)0.006 (2)
C20.030 (3)0.037 (3)0.023 (3)−0.011 (3)−0.009 (2)0.002 (2)
C30.025 (3)0.027 (3)0.024 (3)−0.005 (2)−0.001 (2)0.004 (2)
C40.019 (3)0.039 (3)0.027 (3)−0.008 (2)−0.002 (2)0.008 (3)
C50.023 (3)0.036 (3)0.030 (3)−0.011 (2)−0.004 (2)0.003 (2)
C60.033 (3)0.032 (3)0.023 (3)−0.007 (3)0.001 (2)0.000 (2)
C70.030 (3)0.046 (4)0.033 (3)−0.021 (3)−0.006 (3)0.011 (3)
C80.032 (3)0.030 (3)0.022 (3)−0.006 (2)0.000 (2)0.003 (2)
O100.044 (6)0.044 (6)0.135 (12)−0.014 (5)−0.036 (7)0.007 (7)
La1—N12.726 (4)O8—H8B0.9600
La1—O1i2.454 (4)O9—H9B0.8500
La1—O3ii2.541 (5)O9—H9A0.8800
La1—O42.551 (5)O10—H10A0.8300
La1—O52.543 (4)O10—H10B0.8500
La1—O6iii2.550 (5)N1—C51.338 (7)
La1—O72.604 (7)N1—C11.346 (8)
La1—O82.553 (5)C1—C41.379 (8)
La1—O92.612 (7)C1—C71.503 (8)
O1—C61.271 (8)C2—C31.386 (9)
O2—C61.232 (9)C2—C51.382 (8)
O3—C71.251 (8)C3—C61.510 (8)
O4—C71.253 (7)C3—C41.388 (8)
O5—C81.247 (7)C8—C8iii1.541 (8)
O6—C81.253 (7)C2—H2A0.9300
O7—H7B0.8300C4—H4A0.9300
O7—H7A0.8400C5—H5A0.9300
O8—H8A0.8300
O4—La1—O573.91 (15)La1—O5—C8121.8 (4)
O4—La1—O7143.20 (19)La1iii—O6—C8121.6 (4)
O4—La1—O876.08 (19)La1—O7—H7B119.00
O4—La1—O9130.46 (19)H7A—O7—H7B105.00
O4—La1—N160.09 (14)La1—O7—H7A96.00
O3ii—La1—O4136.05 (14)La1—O8—H8A129.00
O1i—La1—O494.15 (17)H8A—O8—H8B93.00
O4—La1—O6iii71.03 (17)La1—O8—H8B138.00
O5—La1—O785.94 (19)La1—O9—H9A87.00
O5—La1—O878.78 (15)H9A—O9—H9B108.00
O5—La1—O968.31 (19)La1—O9—H9B116.00
O5—La1—N1129.55 (15)H10A—O10—H10B102.00
O3ii—La1—O5143.58 (15)La1—N1—C5123.7 (4)
O1i—La1—O5131.93 (14)La1—N1—C1118.9 (3)
O5—La1—O6iii62.98 (13)C1—N1—C5116.8 (5)
O7—La1—O8130.39 (19)N1—C1—C4122.9 (5)
O7—La1—O964.2 (2)N1—C1—C7115.1 (5)
O7—La1—N1143.97 (18)C4—C1—C7121.9 (6)
O3ii—La1—O776.45 (18)C3—C2—C5118.7 (5)
O1i—La1—O776.62 (19)C2—C3—C6122.0 (5)
O6iii—La1—O772.42 (19)C4—C3—C6120.1 (5)
O8—La1—O966.27 (19)C2—C3—C4117.9 (5)
O8—La1—N171.47 (16)C1—C4—C3119.6 (6)
O3ii—La1—O888.67 (17)N1—C5—C2123.9 (6)
O1i—La1—O8144.45 (16)O1—C6—O2126.8 (6)
O6iii—La1—O8134.78 (18)O2—C6—C3117.2 (5)
O9—La1—N1128.72 (18)O1—C6—C3116.1 (6)
O3ii—La1—O975.33 (18)O4—C7—C1116.7 (6)
O1i—La1—O9135.03 (19)O3—C7—C1119.0 (5)
O6iii—La1—O9115.40 (18)O3—C7—O4124.3 (6)
O3ii—La1—N176.02 (14)O5—C8—O6126.8 (5)
O1i—La1—N174.06 (14)O5—C8—C8iii116.9 (5)
O6iii—La1—N1114.76 (15)O6—C8—C8iii116.4 (5)
O1i—La1—O3ii74.77 (16)C5—C2—H2A121.00
O3ii—La1—O6iii136.50 (17)C3—C2—H2A121.00
O1i—La1—O6iii69.06 (15)C1—C4—H4A120.00
La1i—O1—C6137.1 (4)C3—C4—H4A120.00
La1iv—O3—C7139.6 (4)N1—C5—H5A118.00
La1—O4—C7128.4 (4)C2—C5—H5A118.00
O5—La1—O4—C7158.8 (6)N1—La1—O1i—C6i73.1 (6)
O7—La1—O4—C7−141.7 (5)O4—La1—O6iii—C8iii−86.9 (5)
O8—La1—O4—C776.7 (6)O5—La1—O6iii—C8iii−5.7 (5)
O9—La1—O4—C7117.6 (6)O7—La1—O6iii—C8iii88.8 (5)
N1—La1—O4—C70.3 (5)O8—La1—O6iii—C8iii−41.2 (6)
O3ii—La1—O4—C73.7 (7)O9—La1—O6iii—C8iii39.8 (6)
O1i—La1—O4—C7−68.6 (6)N1—La1—O6iii—C8iii−129.2 (5)
O6iii—La1—O4—C7−134.8 (6)La1i—O1—C6—C3102.3 (6)
O4—La1—O5—C882.1 (5)La1i—O1—C6—O2−78.5 (8)
O7—La1—O5—C8−66.7 (5)La1iv—O3—C7—O4−11.4 (11)
O8—La1—O5—C8160.7 (5)La1iv—O3—C7—C1169.0 (4)
O9—La1—O5—C8−130.5 (5)La1—O4—C7—C14.4 (9)
N1—La1—O5—C8106.5 (5)La1—O4—C7—O3−175.2 (5)
O3ii—La1—O5—C8−127.3 (5)La1—O5—C8—O6174.5 (5)
O1i—La1—O5—C81.2 (6)La1—O5—C8—C8iii−5.3 (8)
O6iii—La1—O5—C85.6 (5)La1iii—O6—C8—O5174.7 (5)
O4—La1—N1—C1−5.7 (4)La1iii—O6—C8—C8iii−5.5 (8)
O4—La1—N1—C5−177.0 (5)C5—N1—C1—C42.4 (8)
O5—La1—N1—C1−32.9 (5)La1—N1—C1—C79.8 (6)
O5—La1—N1—C5155.9 (4)C1—N1—C5—C2−3.0 (8)
O7—La1—N1—C1135.5 (4)C5—N1—C1—C7−178.3 (5)
O7—La1—N1—C5−35.7 (6)La1—N1—C5—C2168.4 (4)
O8—La1—N1—C1−90.0 (4)La1—N1—C1—C4−169.4 (4)
O8—La1—N1—C598.8 (4)N1—C1—C7—O3170.2 (6)
O9—La1—N1—C1−125.6 (4)N1—C1—C7—O4−9.4 (8)
O9—La1—N1—C563.2 (5)C4—C1—C7—O3−10.5 (9)
O3ii—La1—N1—C1176.7 (4)C4—C1—C7—O4169.9 (6)
O3ii—La1—N1—C55.4 (4)N1—C1—C4—C30.1 (9)
O1i—La1—N1—C198.8 (4)C7—C1—C4—C3−179.1 (5)
O1i—La1—N1—C5−72.4 (4)C5—C2—C3—C41.6 (8)
O6iii—La1—N1—C141.6 (4)C3—C2—C5—N11.0 (9)
O6iii—La1—N1—C5−129.7 (4)C5—C2—C3—C6−177.2 (5)
O4—La1—O3ii—C7ii−173.4 (6)C2—C3—C6—O125.5 (8)
O5—La1—O3ii—C7ii49.4 (8)C6—C3—C4—C1176.7 (5)
O7—La1—O3ii—C7ii−13.9 (7)C4—C3—C6—O227.4 (8)
O8—La1—O3ii—C7ii118.3 (7)C2—C3—C6—O2−153.9 (6)
O9—La1—O3ii—C7ii52.5 (7)C4—C3—C6—O1−153.3 (5)
N1—La1—O3ii—C7ii−170.5 (7)C2—C3—C4—C1−2.1 (8)
O4—La1—O1i—C6i130.4 (6)O5—C8—C8iii—O5iii−180.0 (6)
O5—La1—O1i—C6i−157.6 (6)O5—C8—C8iii—O6iii−0.2 (9)
O7—La1—O1i—C6i−85.8 (6)O6—C8—C8iii—O5iii0.2 (9)
O8—La1—O1i—C6i58.6 (7)O6—C8—C8iii—O6iii180.0 (6)
O9—La1—O1i—C6i−56.3 (7)
D—H···AD—HH···AD···AD—H···A
O7—H7A···O4ii0.842.082.911 (8)168
O7—H7B···O10v0.831.712.533 (12)168
O8—H8A···O2vi0.831.832.660 (7)173
O8—H8B···O6vii0.962.032.914 (7)153
O9—H9A···O6vii0.882.272.987 (8)138
O9—H9B···O100.851.732.390 (14)133
O10—H10A···O5ii0.832.242.885 (12)135
O10—H10A···O8ii0.832.292.924 (15)133
O10—H10B···O9viii0.851.772.591 (17)163
C5—H5A···O3ii0.932.493.164 (7)130
Table 1

Selected bond lengths (Å)

La1—N12.726 (4)
La1—O1i2.454 (4)
La1—O3ii2.541 (5)
La1—O42.551 (5)
La1—O52.543 (4)
La1—O6iii2.550 (5)
La1—O72.604 (7)
La1—O82.553 (5)
La1—O92.612 (7)

Symmetry codes: (i) ; (ii) ; (iii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O7—H7A⋯O4ii0.842.082.911 (8)168
O7—H7B⋯O10iv0.831.712.533 (12)168
O8—H8A⋯O2v0.831.832.660 (7)173
O8—H8B⋯O6vi0.962.032.914 (7)153
O9—H9A⋯O6vi0.882.272.987 (8)138
O9—H9B⋯O100.851.732.390 (14)133
O10—H10A⋯O5ii0.832.242.885 (12)135
O10—H10A⋯O8ii0.832.292.924 (15)133
O10—H10B⋯O9vii0.851.772.591 (17)163
C5—H5A⋯O3ii0.932.493.164 (7)130

Symmetry codes: (ii) ; (iv) ; (v) ; (vi) ; (vii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  catena-Poly[diammonium [diaqua-bis(pyridine-2,4-dicarboxyl-ato-κN,O)cuprate(II)] [[diaqua-copper(II)]-μ-pyridine-2,4-dicarboxyl-ato-κN,O:O-[tetra-aqua-cadmium(II)]-μ-pyridine-2,4-dicarboxyl-ato-κO:N,O] hexa-hydrate].

Authors:  Guan-Hua Wang; Zhi-Gang Li; Heng-Qing Jia; Ning-Hai Hu; Jing-Wei Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-14

3.  Bis(1-methyl-4-oxoimidazolidin-2-iminium) diaqua-bis-(pyridine-2,4-dicarboxyl-ato-κN,O)zincate(II) dihydrate.

Authors:  Hossein Aghabozorg; Fatemeh Jafarbak; Masoud Mirzaei; Behrouz Notash
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-12

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  Poly[[hexa-aqua-(μ(2)-oxalato-κO,O:O,O)bis(μ(3)-pyridine-2,4-dicarboxyl-ato-κN,O:O:O)dicerium(III)] monohydrate].

Authors:  Fwu Ming Shen; Shie Fu Lush
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-07
  1 in total

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