Literature DB >> 22199528

catena-Poly[[[(pyridine-κN)copper(II)]-μ-3-{1-[(2-amino-eth-yl)imino]-eth-yl}-6-methyl-2-oxo-2H-pyran-4-olato-κN,N,O:O] perchlorate].

Ali Ourari, Wassila Derafa, Sofiane Bouacida, Djouhra Aggoun.   

Abstract

In the title compound, {[Cu(C(10)H(13)N(2)O(3))(C(5)H(5)N)]ClO(4)}(n), the Cu(II) atom has an N(3)O(2) coordination sphere. The complex contains two different ligands, viz. a pyridine mol-ecule and a Schiff base mol-ecule, resulting from the condensation of ethyl-enodiamine with dehydro-acetic acid. The Cu(II) atom exhibits a square-pyramidal geometry: three of the four donors of the pyramid base belong to the Schiff base ligand (an N atom from the amine group, a second N atom from the imine group and the O atom of the pyran-one residue) and the fourth donor is the pyridine N atom. The coordination around the metal ion is completed by a longer axial bond to the pyran-one O atom of an adjacent Schiff base, so forming a one-dimensional polymer. The complex has a +1 charge that is compensated by a perchlorate ion. The crystal packing, which can be described as alternating chains of cations and tetra-hedral perchlorate anions along the a axis, is stabilized by inter-molecular N-H⋯O, C-H⋯O and C-H⋯N hydrogen-bonding interactions.

Entities:  

Year:  2011        PMID: 22199528      PMCID: PMC3238637          DOI: 10.1107/S1600536811046411

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of similar compounds: El-Abbassi et al. (1987 ▶); Fettouhi et al. (1996 ▶); El-Kihel et al. (1999 ▶); Tan & Kok-Peng Ang (1988 ▶); Djerrari et al. (2002 ▶); El-Kubaisi & Ismail (1994 ▶); Danilova et al. (2003 ▶); Munde et al. (2010 ▶). For their applications, see: Maiti et al. (1988 ▶); Mohan et al. (1981 ▶); Das & Livingstoone (1976 ▶); Moutet & Ali Ourari (1997 ▶); Ourari et al. (2008 ▶).

Experimental

Crystal data

[Cu(C10H13N2O3)(C5H5N)]ClO4 M = 451.32 Orthorhombic, a = 8.8090 (2) Å b = 19.9017 (4) Å c = 20.9053 (5) Å V = 3664.99 (14) Å3 Z = 8 Mo Kα radiation μ = 1.38 mm−1 T = 295 K 0.12 × 0.11 × 0.05 mm

Data collection

Nonius KappaCCD diffractometer 7008 measured reflections 3731 independent reflections 2619 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.121 S = 1.03 3731 reflections 246 parameters H-atom parameters constrained Δρmax = 0.45 e Å−3 Δρmin = −0.49 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SIR2002 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg & Berndt, 2001 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811046411/go2033sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811046411/go2033Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C10H13N2O3)(C5H5N)]ClO4Dx = 1.636 Mg m3
Mr = 451.32Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, PcabCell parameters from 4212 reflections
a = 8.8090 (2) Åθ = 1.0–26.4°
b = 19.9017 (4) ŵ = 1.38 mm1
c = 20.9053 (5) ÅT = 295 K
V = 3664.99 (14) Å3Plate, black
Z = 80.12 × 0.11 × 0.05 mm
F(000) = 1848
Nonius KappaCCD diffractometer2619 reflections with I > 2σ(I)
Radiation source: Enraf Nonius FR590Rint = 0.022
graphiteθmax = 26.4°, θmin = 3.1°
Detector resolution: 9 pixels mm-1h = 0→10
CCD rotation images, thick slices scansk = 0→24
7008 measured reflectionsl = 0→26
3731 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0723P)2 + 0.807P] where P = (Fo2 + 2Fc2)/3
3731 reflections(Δ/σ)max = 0.001
246 parametersΔρmax = 0.45 e Å3
0 restraintsΔρmin = −0.49 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2273 (4)0.02862 (16)0.45790 (16)0.0517 (8)
H10.17980.06580.43990.062*
C20.3060 (4)−0.01413 (18)0.41827 (18)0.0600 (9)
H20.311−0.00580.37460.072*
C30.3770 (4)−0.06940 (19)0.4441 (2)0.0600 (9)
H30.4319−0.09880.41830.072*
C40.3652 (4)−0.08009 (18)0.5081 (2)0.0630 (10)
H40.4119−0.11710.52680.076*
C50.2830 (4)−0.03545 (16)0.54523 (18)0.0560 (8)
H50.2742−0.04390.58880.067*
C60.1257 (4)0.09736 (17)0.71225 (16)0.0559 (9)
H6A0.18830.1370.71790.067*
H6B0.12580.07220.7520.067*
C7−0.0333 (4)0.11746 (18)0.69521 (16)0.0567 (9)
H7A−0.10030.07890.69750.068*
H7B−0.06990.15140.72470.068*
C8−0.2344 (4)0.22163 (17)0.65805 (17)0.0576 (9)
H8A−0.27620.18590.68340.086*
H8B−0.31390.24260.63380.086*
H8C−0.18790.25430.68560.086*
C9−0.1166 (3)0.19342 (14)0.61287 (14)0.0398 (6)
C10−0.1085 (3)0.21966 (14)0.54728 (14)0.0380 (6)
C11−0.1603 (3)0.28666 (15)0.53460 (15)0.0430 (7)
C12−0.1244 (4)0.26748 (18)0.42205 (14)0.0508 (8)
C13−0.1460 (6)0.3012 (2)0.3588 (2)0.0908 (15)
H13A−0.07970.33940.35590.136*
H13B−0.24950.31580.35490.136*
H13C−0.12280.27020.32510.136*
C14−0.0700 (4)0.20627 (18)0.43217 (15)0.0562 (9)
H14−0.04170.17980.39750.067*
C15−0.0541 (3)0.18023 (15)0.49603 (14)0.0423 (7)
N10.2158 (3)0.01933 (12)0.52137 (12)0.0432 (6)
N20.1869 (3)0.05540 (13)0.65998 (12)0.0532 (7)
H2A0.15820.01240.66550.064*
H2B0.2890.0570.66020.064*
N3−0.0300 (3)0.14435 (12)0.62977 (12)0.0429 (6)
O10.0066 (2)0.12212 (10)0.50150 (10)0.0491 (5)
O2−0.1684 (3)0.30769 (10)0.47159 (11)0.0541 (6)
O3−0.1950 (3)0.33001 (10)0.57362 (11)0.0519 (6)
O11−0.1778 (3)0.09728 (16)0.29504 (16)0.0869 (9)
O210.0241 (4)0.16739 (14)0.26635 (16)0.0868 (9)
O31−0.0210 (4)0.06891 (19)0.21098 (16)0.1067 (11)
O410.0701 (4)0.06507 (16)0.31535 (17)0.0910 (10)
Cl1−0.02517 (10)0.09943 (4)0.27165 (4)0.0553 (2)
Cu10.10791 (4)0.089862 (17)0.576431 (17)0.03931 (14)
U11U22U33U12U13U23
C10.057 (2)0.0475 (18)0.0504 (19)0.0085 (15)0.0026 (16)−0.0018 (15)
C20.065 (2)0.062 (2)0.053 (2)0.0106 (18)0.0082 (17)−0.0093 (16)
C30.054 (2)0.057 (2)0.069 (2)0.0124 (16)0.0062 (17)−0.0149 (19)
C40.063 (2)0.0489 (19)0.078 (3)0.0197 (16)−0.0030 (19)−0.0071 (18)
C50.064 (2)0.0480 (18)0.056 (2)0.0109 (16)−0.0041 (17)−0.0006 (16)
C60.075 (2)0.0528 (19)0.0397 (18)0.0080 (17)−0.0046 (16)0.0028 (14)
C70.070 (2)0.062 (2)0.0386 (18)0.0066 (17)0.0109 (16)0.0073 (16)
C80.065 (2)0.0550 (19)0.053 (2)0.0112 (17)0.0181 (17)0.0024 (16)
C90.0388 (15)0.0399 (15)0.0406 (16)−0.0040 (12)0.0029 (12)−0.0041 (12)
C100.0381 (15)0.0365 (14)0.0392 (15)0.0007 (12)−0.0003 (12)0.0003 (12)
C110.0422 (16)0.0434 (16)0.0434 (17)−0.0011 (13)0.0003 (13)0.0008 (13)
C120.062 (2)0.0546 (19)0.0354 (17)0.0125 (15)0.0016 (14)0.0023 (14)
C130.123 (4)0.094 (3)0.055 (3)0.040 (3)0.002 (2)0.021 (2)
C140.073 (2)0.061 (2)0.0352 (17)0.0186 (17)−0.0016 (15)−0.0023 (14)
C150.0423 (16)0.0458 (16)0.0387 (16)0.0055 (13)−0.0009 (12)−0.0036 (13)
N10.0465 (14)0.0377 (12)0.0456 (15)0.0032 (10)−0.0024 (11)−0.0017 (11)
N20.0679 (18)0.0489 (15)0.0428 (15)0.0100 (13)−0.0001 (13)0.0044 (12)
N30.0466 (15)0.0428 (13)0.0394 (14)0.0003 (11)0.0031 (11)0.0037 (11)
O10.0591 (13)0.0467 (12)0.0415 (12)0.0163 (10)−0.0048 (10)−0.0058 (9)
O20.0671 (14)0.0458 (12)0.0494 (13)0.0110 (11)0.0009 (11)0.0060 (10)
O30.0640 (14)0.0388 (11)0.0528 (13)0.0068 (10)0.0018 (11)−0.0062 (10)
O110.0555 (15)0.116 (2)0.089 (2)−0.0077 (16)0.0063 (16)0.0173 (18)
O210.093 (2)0.0626 (17)0.105 (2)−0.0126 (16)−0.0017 (18)0.0161 (16)
O310.109 (3)0.145 (3)0.067 (2)−0.022 (2)−0.0035 (19)−0.038 (2)
O410.088 (2)0.091 (2)0.094 (2)0.0057 (18)−0.0299 (18)0.0290 (18)
Cl10.0575 (5)0.0638 (5)0.0447 (5)−0.0077 (4)−0.0079 (4)0.0055 (4)
Cu10.0458 (2)0.0370 (2)0.0352 (2)0.00416 (15)0.00067 (15)0.00081 (14)
C1—N11.344 (4)C10—C111.434 (4)
C1—C21.375 (4)C11—O31.226 (4)
C1—H10.93C11—O21.384 (4)
C2—C31.376 (5)C12—C141.326 (5)
C2—H20.93C12—O21.365 (4)
C3—C41.358 (6)C12—C131.495 (5)
C3—H30.93C13—H13A0.96
C4—C51.385 (5)C13—H13B0.96
C4—H40.93C13—H13C0.96
C5—N11.337 (4)C14—C151.439 (4)
C5—H50.93C14—H140.93
C6—N21.477 (4)C15—O11.279 (4)
C6—C71.499 (5)N1—Cu12.049 (2)
C6—H6A0.97N2—Cu12.001 (3)
C6—H6B0.97N2—H2A0.9
C7—N31.469 (4)N2—H2B0.9
C7—H7A0.97N3—Cu11.974 (2)
C7—H7B0.97O1—Cu11.914 (2)
C8—C91.512 (4)O3—Cu1i2.358 (2)
C8—H8A0.96O11—Cl11.431 (3)
C8—H8B0.96O21—Cl11.425 (3)
C8—H8C0.96O31—Cl11.407 (3)
C9—N31.288 (4)O41—Cl11.417 (3)
C9—C101.469 (4)Cu1—O3ii2.358 (2)
C10—C151.412 (4)
N1—C1—C2123.2 (3)O2—C12—C13111.8 (3)
N1—C1—H1118.4C12—C13—H13A109.5
C2—C1—H1118.4C12—C13—H13B109.5
C1—C2—C3119.2 (4)H13A—C13—H13B109.5
C1—C2—H2120.4C12—C13—H13C109.5
C3—C2—H2120.4H13A—C13—H13C109.5
C4—C3—C2118.5 (3)H13B—C13—H13C109.5
C4—C3—H3120.8C12—C14—C15120.9 (3)
C2—C3—H3120.8C12—C14—H14119.5
C3—C4—C5119.5 (3)C15—C14—H14119.5
C3—C4—H4120.3O1—C15—C10125.2 (3)
C5—C4—H4120.3O1—C15—C14116.7 (3)
N1—C5—C4123.1 (3)C10—C15—C14118.1 (3)
N1—C5—H5118.5C5—N1—C1116.6 (3)
C4—C5—H5118.5C5—N1—Cu1123.7 (2)
N2—C6—C7108.4 (3)C1—N1—Cu1119.7 (2)
N2—C6—H6A110C6—N2—Cu1108.96 (19)
C7—C6—H6A110C6—N2—H2A109.9
N2—C6—H6B110Cu1—N2—H2A109.9
C7—C6—H6B110C6—N2—H2B109.9
H6A—C6—H6B108.4Cu1—N2—H2B109.9
N3—C7—C6107.5 (3)H2A—N2—H2B108.3
N3—C7—H7A110.2C9—N3—C7121.3 (3)
C6—C7—H7A110.2C9—N3—Cu1128.7 (2)
N3—C7—H7B110.2C7—N3—Cu1109.75 (19)
C6—C7—H7B110.2C15—O1—Cu1124.85 (19)
H7A—C7—H7B108.5C12—O2—C11122.0 (2)
C9—C8—H8A109.5C11—O3—Cu1i132.6 (2)
C9—C8—H8B109.5O31—Cl1—O41110.9 (2)
H8A—C8—H8B109.5O31—Cl1—O21109.4 (2)
C9—C8—H8C109.5O41—Cl1—O21109.14 (19)
H8A—C8—H8C109.5O31—Cl1—O11108.7 (2)
H8B—C8—H8C109.5O41—Cl1—O11108.8 (2)
N3—C9—C10119.8 (3)O21—Cl1—O11109.94 (19)
N3—C9—C8121.1 (3)O1—Cu1—N389.50 (9)
C10—C9—C8119.0 (3)O1—Cu1—N2172.52 (11)
C15—C10—C11119.0 (3)N3—Cu1—N284.80 (10)
C15—C10—C9121.8 (3)O1—Cu1—N189.20 (9)
C11—C10—C9119.2 (3)N3—Cu1—N1168.32 (10)
O3—C11—O2114.0 (3)N2—Cu1—N195.41 (10)
O3—C11—C10127.6 (3)O1—Cu1—O3ii95.50 (9)
O2—C11—C10118.3 (3)N3—Cu1—O3ii95.48 (9)
C14—C12—O2121.4 (3)N2—Cu1—O3ii89.86 (10)
C14—C12—C13126.9 (3)N1—Cu1—O3ii96.20 (9)
N1—C1—C2—C30.0 (5)C6—C7—N3—Cu139.9 (3)
C1—C2—C3—C40.8 (6)C10—C15—O1—Cu1−25.3 (4)
C2—C3—C4—C5−0.1 (6)C14—C15—O1—Cu1155.8 (2)
C3—C4—C5—N1−1.3 (6)C14—C12—O2—C11−0.7 (5)
N2—C6—C7—N3−49.7 (4)C13—C12—O2—C11179.3 (3)
N3—C9—C10—C1523.6 (4)O3—C11—O2—C12175.7 (3)
C8—C9—C10—C15−152.3 (3)C10—C11—O2—C12−2.1 (4)
N3—C9—C10—C11−157.8 (3)O2—C11—O3—Cu1i42.7 (4)
C8—C9—C10—C1126.3 (4)C10—C11—O3—Cu1i−139.8 (3)
C15—C10—C11—O3−171.4 (3)C15—O1—Cu1—N331.6 (3)
C9—C10—C11—O310.0 (5)C15—O1—Cu1—N1−160.0 (3)
C15—C10—C11—O26.1 (4)C15—O1—Cu1—O3ii−63.8 (3)
C9—C10—C11—O2−172.5 (2)C9—N3—Cu1—O1−16.1 (3)
O2—C12—C14—C15−0.6 (6)C7—N3—Cu1—O1158.9 (2)
C13—C12—C14—C15179.5 (4)C9—N3—Cu1—N2168.7 (3)
C11—C10—C15—O1173.9 (3)C7—N3—Cu1—N2−16.2 (2)
C9—C10—C15—O1−7.5 (5)C9—N3—Cu1—N1−99.8 (5)
C11—C10—C15—C14−7.2 (4)C7—N3—Cu1—N175.3 (6)
C9—C10—C15—C14171.3 (3)C9—N3—Cu1—O3ii79.4 (3)
C12—C14—C15—O1−176.5 (3)C7—N3—Cu1—O3ii−105.6 (2)
C12—C14—C15—C104.6 (5)C6—N2—Cu1—N3−11.2 (2)
C4—C5—N1—C12.0 (5)C6—N2—Cu1—N1−179.5 (2)
C4—C5—N1—Cu1−175.0 (3)C6—N2—Cu1—O3ii84.3 (2)
C2—C1—N1—C5−1.3 (5)C5—N1—Cu1—O1−162.4 (3)
C2—C1—N1—Cu1175.8 (3)C1—N1—Cu1—O120.7 (2)
C7—C6—N2—Cu136.0 (3)C5—N1—Cu1—N3−78.7 (6)
C10—C9—N3—C7179.1 (3)C1—N1—Cu1—N3104.4 (5)
C8—C9—N3—C7−5.1 (4)C5—N1—Cu1—N211.7 (3)
C10—C9—N3—Cu1−6.4 (4)C1—N1—Cu1—N2−165.2 (2)
C8—C9—N3—Cu1169.4 (2)C5—N1—Cu1—O3ii102.2 (3)
C6—C7—N3—C9−144.6 (3)C1—N1—Cu1—O3ii−74.7 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O11iii0.902.343.182 (4)156.
N2—H2A···O41iii0.902.573.338 (4)144.
N2—H2B···O31iv0.902.313.142 (4)153.
C1—H1···O10.932.292.842 (4)118.
C5—H5···N20.932.593.121 (4)117.
C8—H8B···O30.962.392.809 (4)106.
Table 1

Selected bond lengths (Å)

N1—Cu12.049 (2)
N2—Cu12.001 (3)
N3—Cu11.974 (2)
O1—Cu11.914 (2)
O3—Cu1i2.358 (2)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O11ii0.902.343.182 (4)156
N2—H2A⋯O41ii0.902.573.338 (4)144
N2—H2B⋯O31iii0.902.313.142 (4)153
C1—H1⋯O10.932.292.842 (4)118
C5—H5⋯N20.932.593.121 (4)117
C8—H8B⋯O30.962.392.809 (4)106

Symmetry codes: (ii) ; (iii) .

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