Literature DB >> 22199503

Tetra-aqua-bis-(2-methyl-1H-imidazole-κN)cobalt(II) naphthalene-1,5-disulfonate.

Yu Jin1.   

Abstract

In the title complex, [Co(C(4)H(6)N(2))(2)(H(2)O)(4)](C(10)H(6)O(6)S(2)), the cation and anion both reside on crystallographic inversion centers, such that the asymmetric unit comprises one half cation and one half anion. The central Co(II) ion is coordinated by four water mol-ecules and two 2-methyl-imidazole ligands, resulting in a trans-octa-hedral coordination geometry. The existence of strong N-H⋯O and O-H⋯O hydrogen-bonding inter-actions gives rise to a three-dimensional structure.

Entities:  

Year:  2011        PMID: 22199503      PMCID: PMC3238612          DOI: 10.1107/S160053681104548X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to ferroelectric metal-organic frameworks, see: Wu et al. (2011 ▶); Ye et al. (2006 ▶); Zhang et al. (2008 ▶, 2010) ▶; Fu et al. (2009 ▶).

Experimental

Crystal data

[Co(C4H6N2)2(H2O)4](C10H6O6S2) M = 581.48 Monoclinic, a = 8.0260 (16) Å b = 12.923 (3) Å c = 11.658 (2) Å β = 99.27 (3)° V = 1193.5 (4) Å3 Z = 2 Mo Kα radiation μ = 0.96 mm−1 T = 293 K 0.3 × 0.3 × 0.2 mm

Data collection

Rigaku Mercury CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.489, T max = 1.000 12041 measured reflections 2729 independent reflections 2558 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.073 S = 1.09 2729 reflections 177 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681104548X/fj2459sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681104548X/fj2459Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C4H6N2)2(H2O)4](C10H6O6S2)F(000) = 602
Mr = 581.48Dx = 1.618 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3450 reflections
a = 8.0260 (16) Åθ = 6.2–55.3°
b = 12.923 (3) ŵ = 0.96 mm1
c = 11.658 (2) ÅT = 293 K
β = 99.27 (3)°Block, pink
V = 1193.5 (4) Å30.3 × 0.3 × 0.2 mm
Z = 2
Rigaku Mercury CCD diffractometer2729 independent reflections
Radiation source: fine-focus sealed tube2558 reflections with I > 2σ(I)
graphiteRint = 0.031
ω scansθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)h = −10→10
Tmin = 0.489, Tmax = 1.000k = −16→16
12041 measured reflectionsl = −15→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.073w = 1/[σ2(Fo2) + (0.0283P)2 + 0.6244P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max = 0.001
2729 reflectionsΔρmax = 0.30 e Å3
177 parametersΔρmin = −0.27 e Å3
4 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0260 (17)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.0422 (2)0.82564 (13)0.59914 (16)0.0329 (4)
H1A1.03200.76420.63890.039*
C20.91065 (19)0.89391 (12)0.58123 (13)0.0237 (3)
C30.92275 (18)0.98928 (11)0.52102 (14)0.0221 (3)
C40.7893 (2)1.06210 (13)0.50084 (16)0.0304 (4)
H4C0.68861.04860.52780.036*
C50.8068 (2)1.15174 (14)0.44245 (18)0.0376 (4)
H5C0.71781.19860.42990.045*
C60.1443 (2)1.11040 (14)0.80184 (15)0.0351 (4)
H6B0.05981.16000.79840.042*
C70.2652 (3)1.10886 (16)0.73404 (17)0.0411 (4)
H7B0.27991.15590.67610.049*
C80.2985 (2)0.97570 (14)0.85354 (17)0.0349 (4)
C90.3757 (3)0.88003 (18)0.9091 (2)0.0561 (6)
H9A0.31240.85730.96770.084*
H9B0.49010.89400.94420.084*
H9C0.37460.82690.85150.084*
Co10.00001.00001.00000.02367 (11)
H40.217 (4)0.8773 (10)1.141 (2)0.074 (9)*
H50.233 (3)0.9781 (17)1.1808 (15)0.058 (8)*
H60.118 (3)1.169 (2)1.1307 (16)0.072 (9)*
H70.006 (2)1.2076 (11)1.0401 (18)0.039 (6)*
N10.3618 (2)1.02391 (14)0.76803 (14)0.0405 (4)
H1B0.44901.00440.73940.049*
N20.16477 (19)1.02694 (11)0.87765 (13)0.0310 (3)
O10.05471 (19)1.15356 (9)1.06915 (12)0.0378 (3)
O20.20133 (17)0.94019 (10)1.12236 (12)0.0356 (3)
O30.60123 (15)0.83245 (10)0.52393 (11)0.0341 (3)
O40.66384 (16)0.94058 (10)0.69426 (11)0.0378 (3)
O50.76184 (17)0.76414 (10)0.70195 (12)0.0396 (3)
S10.72008 (5)0.85486 (3)0.62836 (3)0.02460 (12)
U11U22U33U12U13U23
C10.0290 (8)0.0262 (8)0.0442 (10)0.0024 (7)0.0079 (7)0.0075 (7)
C20.0199 (7)0.0238 (7)0.0278 (8)−0.0024 (6)0.0052 (6)−0.0018 (6)
C30.0178 (7)0.0225 (7)0.0259 (7)−0.0013 (5)0.0031 (6)−0.0029 (6)
C40.0197 (7)0.0304 (8)0.0426 (9)0.0035 (6)0.0097 (7)0.0026 (7)
C50.0253 (8)0.0317 (9)0.0572 (12)0.0098 (7)0.0111 (8)0.0098 (8)
C60.0412 (10)0.0322 (9)0.0334 (9)−0.0028 (7)0.0111 (8)0.0004 (7)
C70.0494 (11)0.0433 (11)0.0333 (9)−0.0123 (9)0.0142 (8)−0.0024 (8)
C80.0334 (9)0.0347 (9)0.0394 (10)−0.0020 (7)0.0148 (8)−0.0073 (7)
C90.0531 (13)0.0455 (12)0.0764 (16)0.0166 (10)0.0304 (12)0.0034 (11)
Co10.02407 (17)0.02192 (17)0.02595 (17)0.00133 (11)0.00684 (12)0.00013 (11)
N10.0364 (9)0.0496 (9)0.0405 (9)−0.0068 (7)0.0215 (7)−0.0112 (7)
N20.0325 (8)0.0285 (7)0.0346 (8)−0.0008 (6)0.0134 (6)−0.0015 (6)
O10.0499 (8)0.0237 (6)0.0364 (7)0.0016 (5)−0.0035 (6)−0.0006 (5)
O20.0363 (7)0.0313 (7)0.0365 (7)0.0043 (5)−0.0022 (5)−0.0040 (5)
O30.0273 (6)0.0388 (7)0.0354 (7)−0.0091 (5)0.0028 (5)−0.0059 (5)
O40.0373 (7)0.0389 (7)0.0416 (7)−0.0062 (5)0.0197 (6)−0.0141 (6)
O50.0402 (7)0.0370 (7)0.0431 (7)−0.0047 (6)0.0115 (6)0.0119 (6)
S10.0228 (2)0.0253 (2)0.0269 (2)−0.00531 (14)0.00757 (15)−0.00294 (14)
C1—C21.366 (2)C8—C91.484 (3)
C1—C5i1.406 (2)C9—H9A0.9600
C1—H1A0.9300C9—H9B0.9600
C2—C31.429 (2)C9—H9C0.9600
C2—S11.7795 (16)Co1—O2ii2.1215 (14)
C3—C41.417 (2)Co1—O22.1215 (14)
C3—C3i1.432 (3)Co1—N22.1242 (15)
C4—C51.362 (2)Co1—N2ii2.1242 (15)
C4—H4C0.9300Co1—O1ii2.1603 (13)
C5—C1i1.406 (2)Co1—O12.1603 (13)
C5—H5C0.9300N1—H1B0.8600
C6—C71.347 (3)O1—H60.837 (10)
C6—N21.387 (2)O1—H70.843 (9)
C6—H6B0.9300O2—H40.845 (10)
C7—N11.365 (3)O2—H50.844 (10)
C7—H7B0.9300O3—S11.4498 (13)
C8—N21.329 (2)O4—S11.4605 (12)
C8—N11.343 (2)O5—S11.4596 (13)
C2—C1—C5i120.04 (16)O2—Co1—N291.27 (6)
C2—C1—H1A120.0O2ii—Co1—N2ii91.27 (6)
C5i—C1—H1A120.0O2—Co1—N2ii88.73 (6)
C1—C2—C3121.33 (14)N2—Co1—N2ii180.000 (1)
C1—C2—S1116.83 (12)O2ii—Co1—O1ii89.81 (5)
C3—C2—S1121.73 (11)O2—Co1—O1ii90.19 (5)
C4—C3—C2123.03 (14)N2—Co1—O1ii90.63 (6)
C4—C3—C3i119.19 (17)N2ii—Co1—O1ii89.37 (6)
C2—C3—C3i117.78 (17)O2ii—Co1—O190.19 (5)
C5—C4—C3120.77 (15)O2—Co1—O189.81 (5)
C5—C4—H4C119.6N2—Co1—O189.37 (6)
C3—C4—H4C119.6N2ii—Co1—O190.63 (6)
C4—C5—C1i120.88 (16)O1ii—Co1—O1180.0
C4—C5—H5C119.6C8—N1—C7108.86 (16)
C1i—C5—H5C119.6C8—N1—H1B125.6
C7—C6—N2109.89 (17)C7—N1—H1B125.6
C7—C6—H6B125.1C8—N2—C6105.61 (15)
N2—C6—H6B125.1C8—N2—Co1132.19 (13)
C6—C7—N1105.70 (17)C6—N2—Co1122.19 (12)
C6—C7—H7B127.2Co1—O1—H6127.2 (19)
N1—C7—H7B127.2Co1—O1—H7124.0 (15)
N2—C8—N1109.93 (17)H6—O1—H7109 (2)
N2—C8—C9128.11 (18)Co1—O2—H4126 (2)
N1—C8—C9121.95 (18)Co1—O2—H5115.3 (18)
C8—C9—H9A109.5H4—O2—H5110 (3)
C8—C9—H9B109.5O3—S1—O5113.01 (8)
H9A—C9—H9B109.5O3—S1—O4112.08 (8)
C8—C9—H9C109.5O5—S1—O4111.17 (8)
H9A—C9—H9C109.5O3—S1—C2106.22 (8)
H9B—C9—H9C109.5O5—S1—C2106.38 (8)
O2ii—Co1—O2180.0O4—S1—C2107.53 (7)
O2ii—Co1—N288.73 (6)
D—H···AD—HH···AD···AD—H···A
O2—H4···O5iii0.85 (1)1.97 (1)2.815 (2)174 (3)
O2—H5···O4iv0.84 (1)1.88 (1)2.7149 (19)171 (3)
O1—H6···O5iv0.84 (1)2.21 (1)3.026 (2)167 (3)
O1—H7···O3v0.84 (1)1.92 (1)2.7661 (18)179 (2)
N1—H1B···O40.862.062.906 (2)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H4⋯O5i0.85 (1)1.97 (1)2.815 (2)174 (3)
O2—H5⋯O4ii0.84 (1)1.88 (1)2.7149 (19)171 (3)
O1—H6⋯O5ii0.84 (1)2.21 (1)3.026 (2)167 (3)
O1—H7⋯O3iii0.84 (1)1.92 (1)2.7661 (18)179 (2)
N1—H1B⋯O40.862.062.906 (2)170

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  Discovery of new ferroelectrics: [H2dbco]2 x [Cl3] x [CuCl3(H2O)2] x H2O (dbco = 1,4-Diaza-bicyclo[2.2.2]octane).

Authors:  Wen Zhang; Heng-Yun Ye; Hong-Ling Cai; Jia-Zhen Ge; Ren-Gen Xiong; Songping D Huang
Journal:  J Am Chem Soc       Date:  2010-06-02       Impact factor: 15.419

2.  Ferroelectric metal-organic framework with a high dielectric constant.

Authors:  Qiong Ye; Yu-Mei Song; Guo-Xi Wang; Kai Chen; Da-Wei Fu; Philip Wai Hong Chan; Jin-Song Zhu; Songping D Huang; Ren-Gen Xiong
Journal:  J Am Chem Soc       Date:  2006-05-24       Impact factor: 15.419

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  3D framework containing Cu4Br4 cubane as connecting node with strong ferroelectricity.

Authors:  Wen Zhang; Ren-Gen Xiong; Songping D Huang
Journal:  J Am Chem Soc       Date:  2008-07-18       Impact factor: 15.419

  4 in total
  1 in total

1.  Bis(butan-1-aminium) naphthalene-1,5-disulfonate.

Authors:  Yu Jin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-02
  1 in total

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