Literature DB >> 22199475

Diaqua-bis-{5-carb-oxy-2-[(1H-1,2,4-triazol-1-yl)meth-yl]-1H-imidazole-4-carboxyl-ato}zinc.

Jing-Hao Hao1, Jian-Ling Wang.   

Abstract

In the title compound, [Zn(C(8)H(6)N(5)O(4))(2)(H(2)O)(2)], the six-coordinate Zn(II) ion, which is located on an inversion center, has a distorted octa-hedral configuration. Each 5-carb-oxy-2-[(1H-1,2,4-triazol-1-yl)meth-yl]-1H-imidazole-4-carboxyl-ate ligand chelates to the Zn(II) ion through a triazole N atom and a carboxyl-ate O atom in the equatorial plane. The coordination sphere is completed by two water mol-ecules in axial positions. There is an intra-molecular O-H⋯O hydrogen bond in the ligand. In the crystal, mol-ecules are linked via inter-molecular O-H⋯O, O-H⋯N and N-H⋯N hydrogen bonds, forming a three-dimensional structure.

Entities:  

Year:  2011        PMID: 22199475      PMCID: PMC3238584          DOI: 10.1107/S160053681104387X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the assembly of multi-functional ligands with metal ions in the construction of two- and three-dimensional structures with special properties such as electrical conductivity, magnetism, host–guest chemistry, and catalysis, see: Eddaoudi et al. (2001 ▶). For metal complexes with N-containing ligands, such as 4,4-bipyridine and triazoles, see: Chang et al. (2010 ▶). For triazole derivatives complexed to Ru to form anti­tumor metal complexes, see: Komeda et al. (2002 ▶). For a silver(I) complex with a ligand containing both a carboxyl­ate and a triazole group, see: Xie et al. (2009 ▶). For the isostructural manganese(II) complex of the same ligand, see: Ding & Tong (2010 ▶).

Experimental

Crystal data

[Zn(C8H6N5O4)2(H2O)2] M = 573.76 Monoclinic, a = 7.7020 (15) Å b = 14.678 (3) Å c = 9.2912 (19) Å β = 96.22 (3)° V = 1044.2 (4) Å3 Z = 2 Mo Kα radiation μ = 1.26 mm−1 T = 293 K 0.15 × 0.15 × 0.10 mm

Data collection

Rigaku Mercury CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2000 ▶) T min = 0.834, T max = 0.884 8121 measured reflections 2048 independent reflections 1783 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.095 S = 1.11 2048 reflections 177 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.28 e Å−3 Data collection: CrystalClear (Rigaku, 2000 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681104387X/su2331sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681104387X/su2331Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C8H6N5O4)2(H2O)2]F(000) = 584
Mr = 573.76Dx = 1.825 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2869 reflections
a = 7.7020 (15) Åθ = 2.2–30.8°
b = 14.678 (3) ŵ = 1.26 mm1
c = 9.2912 (19) ÅT = 293 K
β = 96.22 (3)°Blocky, colourless
V = 1044.2 (4) Å30.15 × 0.15 × 0.10 mm
Z = 2
Rigaku Mercury CCD diffractometer2048 independent reflections
Radiation source: fine-focus sealed tube1783 reflections with I > 2σ(I)
graphiteRint = 0.038
ω scansθmax = 26.0°, θmin = 2.6°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2000)h = −9→8
Tmin = 0.834, Tmax = 0.884k = −18→18
8121 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.095H atoms treated by a mixture of independent and constrained refinement
S = 1.11w = 1/[σ2(Fo2) + (0.0395P)2 + 0.6397P] where P = (Fo2 + 2Fc2)/3
2048 reflections(Δ/σ)max < 0.001
177 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4693 (4)0.6509 (2)0.7392 (3)0.0374 (8)
H10.52210.60680.68670.045*
C20.4094 (4)0.7314 (2)0.9126 (3)0.0335 (7)
H20.40720.75731.00370.040*
C30.1835 (4)0.8324 (2)0.7795 (3)0.0324 (7)
H3A0.14650.84560.87380.039*
H3B0.08160.81310.71640.039*
C40.2560 (4)0.91683 (19)0.7197 (3)0.0238 (6)
C50.4032 (4)1.03992 (19)0.6977 (3)0.0227 (6)
C60.5302 (4)1.1118 (2)0.7490 (3)0.0270 (6)
C70.3112 (4)1.02311 (19)0.5658 (3)0.0223 (6)
C80.2953 (4)1.0733 (2)0.4267 (3)0.0252 (6)
N10.3107 (3)0.75838 (17)0.7936 (3)0.0283 (6)
N20.3478 (3)0.70673 (18)0.6789 (3)0.0352 (6)
N30.5109 (3)0.66274 (18)0.8832 (3)0.0348 (6)
N40.3662 (3)0.97318 (16)0.7941 (2)0.0242 (5)
N50.2194 (3)0.94454 (16)0.5827 (2)0.0250 (5)
H5A0.15050.91780.51680.030*
O10.5950 (3)1.10733 (15)0.8783 (2)0.0345 (5)
O20.5641 (3)1.17290 (14)0.6601 (2)0.0338 (5)
O30.3923 (3)1.14527 (14)0.4209 (2)0.0350 (5)
H3C0.45371.15870.49960.042*
O40.1948 (3)1.04696 (16)0.3247 (2)0.0363 (5)
O50.2866 (4)1.0846 (2)1.0514 (3)0.0512 (8)
H5B0.266 (6)1.082 (3)1.127 (5)0.081 (18)*
H5C0.272 (6)1.133 (3)1.017 (5)0.080 (18)*
Zn10.50001.00001.00000.03113 (18)
U11U22U33U12U13U23
C10.0402 (19)0.0351 (19)0.0368 (19)0.0051 (15)0.0033 (15)−0.0006 (14)
C20.0437 (19)0.0294 (17)0.0254 (16)−0.0050 (14)−0.0058 (13)−0.0005 (13)
C30.0290 (16)0.0310 (17)0.0362 (18)−0.0006 (13)−0.0008 (13)0.0056 (13)
C40.0250 (14)0.0256 (15)0.0203 (14)0.0018 (12)0.0004 (11)0.0021 (11)
C50.0253 (15)0.0226 (14)0.0208 (14)0.0033 (12)0.0054 (11)0.0002 (11)
C60.0279 (16)0.0260 (16)0.0273 (16)0.0006 (12)0.0040 (12)−0.0058 (12)
C70.0236 (14)0.0243 (15)0.0189 (14)0.0034 (11)0.0020 (11)0.0014 (11)
C80.0278 (15)0.0261 (15)0.0222 (15)0.0066 (12)0.0050 (12)0.0020 (12)
N10.0325 (14)0.0270 (14)0.0250 (13)−0.0020 (11)0.0004 (10)0.0035 (10)
N20.0417 (15)0.0376 (16)0.0256 (14)0.0011 (13)−0.0005 (11)−0.0016 (11)
N30.0368 (15)0.0339 (15)0.0314 (14)0.0013 (12)−0.0060 (11)0.0046 (11)
N40.0283 (13)0.0260 (13)0.0181 (12)−0.0002 (10)0.0013 (10)0.0006 (9)
N50.0254 (12)0.0279 (14)0.0204 (12)0.0009 (10)−0.0038 (10)−0.0012 (10)
O10.0425 (13)0.0377 (13)0.0225 (11)−0.0097 (10)0.0000 (9)−0.0058 (9)
O20.0404 (12)0.0284 (12)0.0328 (12)−0.0072 (10)0.0050 (9)0.0021 (9)
O30.0446 (13)0.0335 (13)0.0268 (11)−0.0012 (10)0.0026 (10)0.0074 (9)
O40.0393 (13)0.0472 (14)0.0207 (11)0.0009 (10)−0.0044 (9)0.0056 (10)
O50.0620 (18)0.068 (2)0.0239 (14)0.0243 (15)0.0062 (12)0.0123 (13)
Zn10.0372 (3)0.0384 (3)0.0165 (3)−0.0026 (2)−0.0028 (2)0.0000 (2)
C1—N21.322 (4)C6—O21.265 (3)
C1—N31.353 (4)C7—N51.371 (4)
C1—H10.9300C7—C81.482 (4)
C2—N31.322 (4)C8—O41.220 (3)
C2—N11.332 (4)C8—O31.298 (3)
C2—H20.9300N1—N21.363 (3)
C3—N11.459 (4)N4—Zn12.110 (2)
C3—C41.491 (4)N5—H5A0.8600
C3—H3A0.9700O1—Zn12.115 (2)
C3—H3B0.9700O3—H3C0.8500
C4—N41.325 (4)O5—Zn12.154 (3)
C4—N51.337 (3)O5—H5B0.73 (5)
C5—C71.370 (4)O5—H5C0.78 (5)
C5—N41.377 (3)Zn1—N4i2.110 (2)
C5—C61.482 (4)Zn1—O1i2.115 (2)
C6—O11.252 (3)Zn1—O5i2.154 (3)
N2—C1—N3114.9 (3)N2—N1—C3122.6 (2)
N2—C1—H1122.6C1—N2—N1102.2 (2)
N3—C1—H1122.6C2—N3—C1102.7 (3)
N3—C2—N1110.6 (3)C4—N4—C5105.7 (2)
N3—C2—H2124.7C4—N4—Zn1144.30 (19)
N1—C2—H2124.7C5—N4—Zn1109.97 (18)
N1—C3—C4112.2 (2)C4—N5—C7107.9 (2)
N1—C3—H3A109.2C4—N5—H5A126.1
C4—C3—H3A109.2C7—N5—H5A126.1
N1—C3—H3B109.2C6—O1—Zn1115.28 (18)
C4—C3—H3B109.2C8—O3—H3C115.0
H3A—C3—H3B107.9Zn1—O5—H5B115 (4)
N4—C4—N5111.3 (2)Zn1—O5—H5C121 (4)
N4—C4—C3124.7 (2)H5B—O5—H5C114 (5)
N5—C4—C3124.0 (3)N4—Zn1—N4i180.000 (1)
C7—C5—N4109.3 (2)N4—Zn1—O1i100.52 (8)
C7—C5—C6132.5 (3)N4i—Zn1—O1i79.48 (8)
N4—C5—C6118.3 (2)N4—Zn1—O179.48 (8)
O1—C6—O2125.1 (3)N4i—Zn1—O1100.52 (8)
O1—C6—C5116.8 (3)O1i—Zn1—O1180.00 (8)
O2—C6—C5118.1 (3)N4—Zn1—O5i90.04 (10)
C5—C7—N5105.8 (2)N4i—Zn1—O5i89.96 (10)
C5—C7—C8132.6 (3)O1i—Zn1—O5i90.32 (11)
N5—C7—C8121.6 (2)O1—Zn1—O5i89.68 (11)
O4—C8—O3123.1 (3)N4—Zn1—O589.96 (10)
O4—C8—C7120.4 (3)N4i—Zn1—O590.04 (10)
O3—C8—C7116.6 (3)O1i—Zn1—O589.68 (11)
C2—N1—N2109.5 (3)O1—Zn1—O590.32 (11)
C2—N1—C3127.8 (3)O5i—Zn1—O5180.000 (1)
N1—C3—C4—N4−76.1 (4)C3—C4—N4—Zn1−3.2 (5)
N1—C3—C4—N5102.9 (3)C7—C5—N4—C41.0 (3)
C7—C5—C6—O1−178.8 (3)C6—C5—N4—C4−177.7 (2)
N4—C5—C6—O1−0.6 (4)C7—C5—N4—Zn1−178.12 (17)
C7—C5—C6—O21.6 (5)C6—C5—N4—Zn13.2 (3)
N4—C5—C6—O2179.9 (2)N4—C4—N5—C70.3 (3)
N4—C5—C7—N5−0.8 (3)C3—C4—N5—C7−178.8 (3)
C6—C5—C7—N5177.6 (3)C5—C7—N5—C40.3 (3)
N4—C5—C7—C8177.3 (3)C8—C7—N5—C4−178.0 (2)
C6—C5—C7—C8−4.3 (5)O2—C6—O1—Zn1177.0 (2)
C5—C7—C8—O4−175.5 (3)C5—C6—O1—Zn1−2.5 (3)
N5—C7—C8—O42.3 (4)C4—N4—Zn1—N4i−159 (100)
C5—C7—C8—O34.4 (5)C5—N4—Zn1—N4i20 (100)
N5—C7—C8—O3−177.8 (2)C4—N4—Zn1—O1i−1.8 (3)
N3—C2—N1—N2−0.6 (3)C5—N4—Zn1—O1i176.69 (17)
N3—C2—N1—C3−179.2 (3)C4—N4—Zn1—O1178.2 (3)
C4—C3—N1—C299.6 (3)C5—N4—Zn1—O1−3.31 (17)
C4—C3—N1—N2−78.8 (3)C4—N4—Zn1—O5i88.5 (3)
N3—C1—N2—N10.5 (4)C5—N4—Zn1—O5i−93.0 (2)
C2—N1—N2—C10.1 (3)C4—N4—Zn1—O5−91.5 (3)
C3—N1—N2—C1178.8 (3)C5—N4—Zn1—O587.0 (2)
N1—C2—N3—C10.9 (3)C6—O1—Zn1—N43.3 (2)
N2—C1—N3—C2−0.9 (4)C6—O1—Zn1—N4i−176.7 (2)
N5—C4—N4—C5−0.8 (3)C6—O1—Zn1—O1i−136 (100)
C3—C4—N4—C5178.3 (3)C6—O1—Zn1—O5i93.4 (2)
N5—C4—N4—Zn1177.7 (2)C6—O1—Zn1—O5−86.6 (2)
D—H···AD—HH···AD···AD—H···A
N5—H5A···N3ii0.861.952.801 (4)170
O3—H3C···O20.851.652.493 (3)173
O5—H5B···O4iii0.73 (5)2.04 (5)2.764 (4)168 (5)
O5—H5C···N2iv0.78 (5)2.23 (5)2.896 (4)143 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N5—H5A⋯N3i0.861.952.801 (4)170
O3—H3C⋯O20.851.652.493 (3)173
O5—H5B⋯O4ii0.73 (5)2.04 (5)2.764 (4)168 (5)
O5—H5C⋯N2iii0.78 (5)2.23 (5)2.896 (4)143 (5)

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Modular chemistry: secondary building units as a basis for the design of highly porous and robust metal-organic carboxylate frameworks.

Authors:  M Eddaoudi; D B Moler; H Li; B Chen; T M Reineke; M O'Keeffe; O M Yaghi
Journal:  Acc Chem Res       Date:  2001-04       Impact factor: 22.384

3.  A novel isomerization on interaction of antitumor-active azole-bridged dinuclear platinum(II) complexes with 9-ethylguanine. Platinum(II) atom migration from N2 to N3 on 1,2,3-triazole.

Authors:  Seiji Komeda; Martin Lutz; Anthony L Spek; Yasuyuki Yamanaka; Takaji Sato; Masahiko Chikuma; Jan Reedijk
Journal:  J Am Chem Soc       Date:  2002-05-01       Impact factor: 15.419

4.  Diaqua-bis{5-carboxy-2-[(1H-1,2,4-triazol-1-yl)-meth-yl]-1H-imidazole-4-carboxyl-ato}-manganese(II).

Authors:  De-Gang Ding; Yan Tong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-10
  4 in total

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