Literature DB >> 22198685

An explicit solution for progress curve analysis in systems characterized by endogenous substrate production.

Chetan T Goudar1.   

Abstract

The Lambert W function was used to explicitly relate substrate concentration S, to time t, and the kinetic parameters V (m), K (m), and R in the modified Michaelis-Menten equation that accounts for endogenous substrate production. The applicability of this explicit formulation for kinetic parameter estimation by progress curve analysis was demonstrated using a combination of synthetic and experimental substrate depletion data. Synthetic substrate depletion data were generated using S (0) values of 1, 2, and 3 μM and V (m), K (m), and R values of 1.0 μM h(-1), 1.0 μM, and 0.1 μM h(-1), respectively, and contained 5% normally distributed error. Experimental data were obtained from two previously published studies on hydrogen depletion in four experimental systems. In all instances, experimental data were well described by the explicit solution presented in this study. Differential equation solution and iterative S estimation are eliminated with the explicit solution approach, thereby simplifying progress curve analysis in systems characterized by endogenous substrate production.

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Year:  2011        PMID: 22198685     DOI: 10.1007/s00248-011-9996-3

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  8 in total

1.  Progress curve analysis for enzyme and microbial kinetic reactions using explicit solutions based on the Lambert W function.

Authors:  Chetan T Goudar; Steve K Harris; Michael J McInerney; Joseph M Suflita
Journal:  J Microbiol Methods       Date:  2004-12       Impact factor: 2.363

2.  Kinetics of propionate conversion in anaerobic continuously stirred tank reactors.

Authors:  H B Nielsen; Z Mladenovska; B K Ahring
Journal:  Environ Technol       Date:  2008-02       Impact factor: 3.247

3.  Simultaneous estimation ofV max, K m, and the rate of endogenous substrate production (R) from substrate depletion data.

Authors:  J A Robinson; W G Characklis
Journal:  Microb Ecol       Date:  1984-06       Impact factor: 4.552

4.  Kinetics of microbial dehalogenation of haloaromatic substrates in methanogenic environments.

Authors:  J M Suflita; J A Robinson; J M Tiedje
Journal:  Appl Environ Microbiol       Date:  1983-05       Impact factor: 4.792

5.  Kinetics of hydrogen consumption by rumen fluid, anaerobic digestor sludge, and sediment.

Authors:  J A Robinson; J M Tiedje
Journal:  Appl Environ Microbiol       Date:  1982-12       Impact factor: 4.792

6.  Parameter estimation using a direct solution of the integrated Michaelis-Menten equation.

Authors:  C T Goudar; J R Sonnad; R G Duggleby
Journal:  Biochim Biophys Acta       Date:  1999-01-11

7.  Accurate kinetic parameter estimation during progress curve analysis of systems with endogenous substrate production.

Authors:  Chetan T Goudar
Journal:  Biotechnol Bioeng       Date:  2011-04-25       Impact factor: 4.530

8.  Analysis of enzyme progress curves by nonlinear regression.

Authors:  R G Duggleby
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

  8 in total
  1 in total

1.  The tuberculosis necrotizing toxin is an NAD+ and NADP+ glycohydrolase with distinct enzymatic properties.

Authors:  Uday Tak; Jiri Vlach; Acely Garza-Garcia; Doreen William; Olga Danilchanka; Luiz Pedro Sório de Carvalho; Jamil S Saad; Michael Niederweis
Journal:  J Biol Chem       Date:  2018-12-28       Impact factor: 5.157

  1 in total

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