Literature DB >> 22195227

Evaluating measures of redundancy in clinical texts.

Rui Zhang1, Serguei Pakhomov, Bridget T McInnes, Genevieve B Melton.   

Abstract

Although information redundancy has been reported as an important problem for clinicians when using electronic health records and clinical reports, measuring redundancy in clinical text has not been extensively investigated. We evaluated several automated techniques to quantify the redundancy in clinical documents using an expert-derived reference standard consisting of outpatient clinical documents. The technique that resulted in the best correlation (82%) with human ratings consisted a modified dynamic programming alignment algorithm over a sliding window augmented with a) lexical normalization and b) stopword removal. When this method was applied to the overall outpatient record, we found that overall information redundancy in clinical notes increased over time and that mean document redundancy scores for individual patient documents appear to have cyclical patterns corresponding to clinical events. These results show that outpatient documents have large amounts of redundant information and that development of effective redundancy measures warrants additional investigation.

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Year:  2011        PMID: 22195227      PMCID: PMC3243221     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  13 in total

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Journal:  AMIA Annu Symp Proc       Date:  2003

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Journal:  Methods Inf Med       Date:  2009       Impact factor: 2.176

3.  Quantifying clinical narrative redundancy in an electronic health record.

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4.  Semantic Similarity and Relatedness between Clinical Terms: An Experimental Study.

Authors:  Serguei Pakhomov; Bridget McInnes; Terrence Adam; Ying Liu; Ted Pedersen; Genevieve B Melton
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

5.  UMLS-Interface and UMLS-Similarity : open source software for measuring paths and semantic similarity.

Authors:  Bridget T McInnes; Ted Pedersen; Serguei V S Pakhomov
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

6.  Healthcare IT usability and suitability for clinical needs: challenges of design, workflow, and contractual relations.

Authors:  Ross Koppel; David A Kreda
Journal:  Stud Health Technol Inform       Date:  2010

7.  Lexical methods for managing variation in biomedical terminologies.

Authors:  A T McCray; S Srinivasan; A C Browne
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1994

8.  Inter-patient distance metrics using SNOMED CT defining relationships.

Authors:  Genevieve B Melton; Simon Parsons; Frances P Morrison; Adam S Rothschild; Marianthi Markatou; George Hripcsak
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Authors:  Mounir Errami; Jonathan D Wren; Justin M Hicks; Harold R Garner
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10.  PubMed related articles: a probabilistic topic-based model for content similarity.

Authors:  Jimmy Lin; W John Wilbur
Journal:  BMC Bioinformatics       Date:  2007-10-30       Impact factor: 3.169

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  27 in total

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Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

2.  Automated assessment of medical training evaluation text.

Authors:  Rui Zhang; Serguei Pakhomov; Sophia Gladding; Michael Aylward; Emily Borman-Shoap; Genevieve B Melton
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

3.  Syntactic dependency parsers for biomedical-NLP.

Authors:  Raphael Cohen; Michael Elhadad
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

4.  Impact of a prototype visualization tool for new information in EHR clinical documents.

Authors:  O Farri; A Rahman; K A Monsen; R Zhang; S V Pakhomov; D S Pieczkiewicz; S M Speedie; G B Melton
Journal:  Appl Clin Inform       Date:  2012-10-31       Impact factor: 2.342

5.  What's in a Summary? Laying the Groundwork for Advances in Hospital-Course Summarization.

Authors:  Griffin Adams; Emily Alsentzer; Mert Ketenci; Jason Zucker; Noémie Elhadad
Journal:  Proc Conf       Date:  2021-06

6.  Using language models to identify relevant new information in inpatient clinical notes.

Authors:  Rui Zhang; Serguei V Pakhomov; Janet T Lee; Genevieve B Melton
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

7.  Mining Medication Use Patterns from Clinical Notes for Breast Cancer Patients Through a Two-Stage Topic Modeling Approach.

Authors:  Kimberley Es Kondratieff; J Thomas Brown; Marily Barron; Jeremy L Warner; Zhijun Yin
Journal:  AMIA Annu Symp Proc       Date:  2022-05-23

8.  Assessment of Data Quality Variability across Two EHR Systems through a Case Study of Post-Surgical Complications.

Authors:  Sunyang Fu; Andrew Wen; Gavin M Schaeferle; Patrick M Wilson; Gabriel Demuth; Xiaoyang Ruan; Sijia Liu; Curtis Storlie; Hongfang Liu
Journal:  AMIA Annu Symp Proc       Date:  2022-05-23

9.  Redundancy in electronic health record corpora: analysis, impact on text mining performance and mitigation strategies.

Authors:  Raphael Cohen; Michael Elhadad; Noémie Elhadad
Journal:  BMC Bioinformatics       Date:  2013-01-16       Impact factor: 3.307

10.  Length and Redundancy of Outpatient Progress Notes Across a Decade at an Academic Medical Center.

Authors:  Adam Rule; Steven Bedrick; Michael F Chiang; Michelle R Hribar
Journal:  JAMA Netw Open       Date:  2021-07-01
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