Literature DB >> 22195076

The SHARPn project on secondary use of Electronic Medical Record data: progress, plans, and possibilities.

Christopher G Chute1, Jyotishman Pathak, Guergana K Savova, Kent R Bailey, Marshall I Schor, Lacey A Hart, Calvin E Beebe, Stanley M Huff.   

Abstract

SHARPn is a collaboration among 16 academic and industry partners committed to the production and distribution of high-quality software artifacts that support the secondary use of EMR data. Areas of emphasis are data normalization, natural language processing, high-throughput phenotyping, and data quality metrics. Our work avails the industrial scalability afforded by the Unstructured Information Management Architecture (UIMA) from IBM Watson Research labs, the same framework which underpins the Watson Jeopardy demonstration. This descriptive paper outlines our present work and achievements, and presages our trajectory for the remainder of the funding period. The project is one of the four Strategic Health IT Advanced Research Projects (SHARP) projects funded by the Office of the National Coordinator in 2010.

Mesh：

Year:  2011        PMID： 22195076      PMCID： PMC3243296     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN： 1559-4076


  6 in total

1.  Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.

Authors:  Guergana K Savova; James J Masanz; Philip V Ogren; Jiaping Zheng; Sunghwan Sohn; Karin C Kipper-Schuler; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

2.  Mayo clinic smoking status classification system: extensions and improvements.

Authors:  Sunghwan Sohn; Guergana K Savova
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

3.  LexGrid: a framework for representing, storing, and querying biomedical terminologies from simple to sublime.

Authors:  Jyotishman Pathak; Harold R Solbrig; James D Buntrock; Thomas M Johnson; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2009-03-04       Impact factor: 4.497

4.  Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease.

Authors:  Iftikhar J Kullo; Jin Fan; Jyotishman Pathak; Guergana K Savova; Zeenat Ali; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

5.  The eMERGE Network: a consortium of biorepositories linked to electronic medical records data for conducting genomic studies.

Authors:  Catherine A McCarty; Rex L Chisholm; Christopher G Chute; Iftikhar J Kullo; Gail P Jarvik; Eric B Larson; Rongling Li; Daniel R Masys; Marylyn D Ritchie; Dan M Roden; Jeffery P Struewing; Wendy A Wolf
Journal:  BMC Med Genomics       Date:  2011-01-26       Impact factor: 3.063

6.  A framework for comprehensive health terminology systems in the United States: development guidelines, criteria for selection, and public policy implications. ANSI Healthcare Informatics Standards Board Vocabulary Working Group and the Computer-Based Patient Records Institute Working Group on Codes and Structures.

Authors:  C G Chute; S P Cohn; J R Campbell
Journal:  J Am Med Inform Assoc       Date:  1998 Nov-Dec       Impact factor: 4.497
  6 in total
  27 in total

1.  Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution.

Authors:  Guoqian Jiang; Richard C Kiefer; Luke V Rasmussen; Harold R Solbrig; Huan Mo; Jennifer A Pacheco; Jie Xu; Enid Montague; William K Thompson; Joshua C Denny; Christopher G Chute; Jyotishman Pathak
Journal:  J Biomed Inform       Date:  2016-07-05       Impact factor: 6.317

Review 2.  Intelligent use and clinical benefits of electronic health records in rheumatoid arthritis.

Authors:  Robert J Carroll; Anne E Eyler; Joshua C Denny
Journal:  Expert Rev Clin Immunol       Date:  2015-02-08       Impact factor: 4.473

3.  Defining a comprehensive verotype using electronic health records for personalized medicine.

Authors:  Mary Regina Boland; George Hripcsak; Yufeng Shen; Wendy K Chung; Chunhua Weng
Journal:  J Am Med Inform Assoc       Date:  2013-09-03       Impact factor: 4.497

4.  Evaluation of Semantic Web Technologies for Storing Computable Definitions of Electronic Health Records Phenotyping Algorithms.

Authors:  Václav Papež; Spiros Denaxas; Harry Hemingway
Journal:  AMIA Annu Symp Proc       Date:  2018-04-16

5.  Causal Phenotyping for Susceptibility to Cardiotoxicity from Antineoplastic Breast Cancer Medications.

Authors:  Deyu Sun; Gyorgy J Simon; Steven Skube; Anne H Blaes; Genevieve B Melton; Rui Zhang
Journal:  AMIA Annu Symp Proc       Date:  2018-04-16

6.  Influenza detection from emergency department reports using natural language processing and Bayesian network classifiers.

Authors:  Ye Ye; Fuchiang Rich Tsui; Michael Wagner; Jeremy U Espino; Qi Li
Journal:  J Am Med Inform Assoc       Date:  2014-01-09       Impact factor: 4.497

7.  Standardizing Heterogeneous Annotation Corpora Using HL7 FHIR for Facilitating their Reuse and Integration in Clinical NLP.

Authors:  Na Hong; Andrew Wen; Majid Rastegar Mojarad; Sunghwan Sohn; Hongfang Liu; Guoqian Jiang
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

8.  Preprocessing structured clinical data for predictive modeling and decision support. A roadmap to tackle the challenges.

Authors:  José Carlos Ferrão; Mónica Duarte Oliveira; Filipe Janela; Henrique M G Martins
Journal:  Appl Clin Inform       Date:  2016-12-07       Impact factor: 2.342

9.  Clinical research informatics and electronic health record data.

Authors:  R L Richesson; M M Horvath; S A Rusincovitch
Journal:  Yearb Med Inform       Date:  2014-08-15

10.  Combining infobuttons and semantic web rules for identifying patterns and delivering highly-personalized education materials.

Authors:  Nathan C Hulse; Jie Long; Cui Tao
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16
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