Literature DB >> 22194581

The ribosome modulates nascent protein folding.

Christian M Kaiser1, Daniel H Goldman, John D Chodera, Ignacio Tinoco, Carlos Bustamante.   

Abstract

Proteins are synthesized by the ribosome and generally must fold to become functionally active. Although it is commonly assumed that the ribosome affects the folding process, this idea has been extremely difficult to demonstrate. We have developed an experimental system to investigate the folding of single ribosome-bound stalled nascent polypeptides with optical tweezers. In T4 lysozyme, synthesized in a reconstituted in vitro translation system, the ribosome slows the formation of stable tertiary interactions and the attainment of the native state relative to the free protein. Incomplete T4 lysozyme polypeptides misfold and aggregate when free in solution, but they remain folding-competent near the ribosomal surface. Altogether, our results suggest that the ribosome not only decodes the genetic information and synthesizes polypeptides, but also promotes efficient de novo attainment of the native state.

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Year:  2011        PMID: 22194581      PMCID: PMC4172366          DOI: 10.1126/science.1209740

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  48 in total

1.  The geometry of the ribosomal polypeptide exit tunnel.

Authors:  N R Voss; M Gerstein; T A Steitz; P B Moore
Journal:  J Mol Biol       Date:  2006-05-30       Impact factor: 5.469

2.  Theory, analysis, and interpretation of single-molecule force spectroscopy experiments.

Authors:  Olga K Dudko; Gerhard Hummer; Attila Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

3.  Electrostatic effects on funneled landscapes and structural diversity in denatured protein ensembles.

Authors:  Patrick Weinkam; Ekaterina V Pletneva; Harry B Gray; Jay R Winkler; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-30       Impact factor: 11.205

4.  Subdomain interactions as a determinant in the folding and stability of T4 lysozyme.

Authors:  M Llinás; S Marqusee
Journal:  Protein Sci       Date:  1998-01       Impact factor: 6.725

5.  Contact order, transition state placement and the refolding rates of single domain proteins.

Authors:  K W Plaxco; K T Simons; D Baker
Journal:  J Mol Biol       Date:  1998-04-10       Impact factor: 5.469

6.  Formation of randomly paired disulfide bonds in des-(121-124)-ribonuclease after reduction and reoxidation.

Authors:  H Taniuchi
Journal:  J Biol Chem       Date:  1970-10-25       Impact factor: 5.157

7.  Control of enzyme activity by an engineered disulfide bond.

Authors:  M Matsumura; B W Matthews
Journal:  Science       Date:  1989-02-10       Impact factor: 47.728

8.  The folding cooperativity of a protein is controlled by its chain topology.

Authors:  Elizabeth A Shank; Ciro Cecconi; Jesse W Dill; Susan Marqusee; Carlos Bustamante
Journal:  Nature       Date:  2010-05-23       Impact factor: 49.962

9.  Cotranslational folding promotes beta-helix formation and avoids aggregation in vivo.

Authors:  Michael S Evans; Ian M Sander; Patricia L Clark
Journal:  J Mol Biol       Date:  2008-07-22       Impact factor: 5.469

10.  The relationships between the isoelectric point and: length of proteins, taxonomy and ecology of organisms.

Authors:  Joanna Kiraga; Pawel Mackiewicz; Dorota Mackiewicz; Maria Kowalczuk; Przemysław Biecek; Natalia Polak; Kamila Smolarczyk; Miroslaw R Dudek; Stanislaw Cebrat
Journal:  BMC Genomics       Date:  2007-06-12       Impact factor: 3.969

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  116 in total

1.  Dynamic enzyme docking to the ribosome coordinates N-terminal processing with polypeptide folding.

Authors:  Arzu Sandikci; Felix Gloge; Michael Martinez; Matthias P Mayer; Rebecca Wade; Bernd Bukau; Günter Kramer
Journal:  Nat Struct Mol Biol       Date:  2013-06-16       Impact factor: 15.369

2.  Genetic code-guided protein synthesis and folding in Escherichia coli.

Authors:  Shaoliang Hu; Mingrong Wang; Guoping Cai; Mingyue He
Journal:  J Biol Chem       Date:  2013-09-03       Impact factor: 5.157

3.  A transformation for the mechanical fingerprints of complex biomolecular interactions.

Authors:  Yaojun Zhang; Olga K Dudko
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-23       Impact factor: 11.205

4.  Ribosome. Mechanical force releases nascent chain-mediated ribosome arrest in vitro and in vivo.

Authors:  Daniel H Goldman; Christian M Kaiser; Anthony Milin; Maurizio Righini; Ignacio Tinoco; Carlos Bustamante
Journal:  Science       Date:  2015-04-23       Impact factor: 47.728

Review 5.  Probing the mechanisms of translation with force.

Authors:  Christian M Kaiser; Ignacio Tinoco
Journal:  Chem Rev       Date:  2014-01-09       Impact factor: 60.622

Review 6.  The stop-and-go traffic regulating protein biogenesis: How translation kinetics controls proteostasis.

Authors:  Kevin C Stein; Judith Frydman
Journal:  J Biol Chem       Date:  2018-11-30       Impact factor: 5.157

7.  Quantitative determination of ribosome nascent chain stability.

Authors:  Avi J Samelson; Madeleine K Jensen; Randy A Soto; Jamie H D Cate; Susan Marqusee
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-07       Impact factor: 11.205

8.  An in vitro tag-and-modify protein sample generation method for single-molecule fluorescence resonance energy transfer.

Authors:  Kambiz M Hamadani; Jesse Howe; Madeleine K Jensen; Peng Wu; Jamie H D Cate; Susan Marqusee
Journal:  J Biol Chem       Date:  2017-07-28       Impact factor: 5.157

Review 9.  Comparing protein folding in vitro and in vivo: foldability meets the fitness challenge.

Authors:  Karan S Hingorani; Lila M Gierasch
Journal:  Curr Opin Struct Biol       Date:  2014-01-14       Impact factor: 6.809

10.  You got to know when to hold (or unfold) 'em….

Authors:  Daniel N Hebert; Kshama D Chandrasekhar; Lila M Gierasch
Journal:  Mol Cell       Date:  2012-10-12       Impact factor: 17.970

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