Literature DB >> 22189874

Magnitude and origin of the attraction and directionality of the halogen bonds of the complexes of C6F5X and C6H5X (X = I, Br, Cl and F) with pyridine.

Seiji Tsuzuki1, Akihiro Wakisaka, Taizo Ono, Takaaki Sonoda.   

Abstract

The geometries and interaction energies of complexes of pyridine with C(6)F(5)X, C(6)H(5)X (X = I, Br, Cl, F and H) and R(F)I (R(F) = CF(3), C(2)F(5) and C(3)F(7)) have been studied by ab initio molecular orbital calculations. The CCSD(T) interaction energies (E(int)) for the C(6)F(5)X-pyridine (X = I, Br, Cl, F and H) complexes at the basis set limit were estimated to be -5.59, -4.06, -2.78, -0.19 and -4.37 kcal  mol(-1) , respectively, whereas the E(int) values for the C(6)H(5)X-pyridine (X = I, Br, Cl and H) complexes were estimated to be -3.27, -2.17, -1.23 and -1.78 kcal  mol(-1), respectively. Electrostatic interactions are the cause of the halogen dependence of the interaction energies and the enhancement of the attraction by the fluorine atoms in C(6)F(5)X. The values of E(int) estimated for the R(F)I-pyridine (R(F) = CF(3), C(2)F(5) and C(3)F(7)) complexes (-5.14, -5.38 and -5.44 kcal  mol(-1), respectively) are close to that for the C(6)F(5)I-pyridine complex. Electrostatic interactions are the major source of the attraction in the strong halogen bond although induction and dispersion interactions also contribute to the attraction. Short-range (charge-transfer) interactions do not contribute significantly to the attraction. The magnitude of the directionality of the halogen bond correlates with the magnitude of the attraction. Electrostatic interactions are mainly responsible for the directionality of the halogen bond. The directionality of halogen bonds involving iodine and bromine is high, whereas that of chlorine is low and that of fluorine is negligible. The directionality of the halogen bonds in the C(6)F(5)I- and C(2)F(5)I-pyridine complexes is higher than that in the hydrogen bonds in the water dimer and water-formaldehyde complex. The calculations suggest that the C-I and C-Br halogen bonds play an important role in controlling the structures of molecular assemblies, that the C-Cl bonds play a less important role and that C-F bonds have a negligible impact.
Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2011        PMID: 22189874     DOI: 10.1002/chem.201102562

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  12 in total

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3.  Benchmarking DFT methods with small basis sets for the calculation of halogen-bond strengths.

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6.  XBphos-Rh: a halogen-bond assembled supramolecular catalyst.

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7.  Studies of Halogen Bonding Induced by Pentafluorosulfanyl Aryl Iodides: A Potential Group of Halogen Bond Donors in a Rational Drug Design.

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8.  Combined diffraction and density functional theory calculations of halogen-bonded cocrystal monolayers.

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Journal:  Langmuir       Date:  2013-11-20       Impact factor: 3.882

9.  Structural Examination of Halogen-Bonded Co-Crystals of Tritopic Acceptors.

Authors:  Stefan N L Andree; Abhijeet S Sinha; Christer B Aakeröy
Journal:  Molecules       Date:  2018-01-13       Impact factor: 4.411

10.  Halogen-bonding-induced diverse aggregation of 4,5-diiodo-1,2,3-triazolium salts with different anions.

Authors:  Xingyu Xu; Shiqing Huang; Zengyu Zhang; Lei Cao; Xiaoyu Yan
Journal:  Beilstein J Org Chem       Date:  2020-01-13       Impact factor: 2.883

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