Literature DB >> 22183591

An efficient purification system for native minichromosome from Saccharomyces cerevisiae.

Ashwin Unnikrishnan1, Bungo Akiyoshi, Sue Biggins, Toshio Tsukiyama.   

Abstract

We have recently established a system for purifying minichromosomes in a native state from Saccharomyces cerevisiae. This system is extremely efficient, and a single-step purification yields samples with sufficient purity and quantity for mass spectrometry (MS) analysis of histones and non-histone proteins tightly associated with the minichromosome. The templates can also be used in various biochemical assays in vitro, such as transcription and recombination, and could be suitable for EM or other biophysical studies.

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Year:  2012        PMID: 22183591      PMCID: PMC3243952          DOI: 10.1007/978-1-61779-477-3_8

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  4 in total

1.  The organized chromatin domain of the repressed yeast a cell-specific gene STE6 contains two molecules of the corepressor Tup1p per nucleosome.

Authors:  C E Ducker; R T Simpson
Journal:  EMBO J       Date:  2000-02-01       Impact factor: 11.598

2.  Quantitative proteomic analysis of purified yeast kinetochores identifies a PP1 regulatory subunit.

Authors:  Bungo Akiyoshi; Christian R Nelson; Jeffrey A Ranish; Sue Biggins
Journal:  Genes Dev       Date:  2009-12-15       Impact factor: 11.361

3.  Nuclease digestion of circular TRP1ARS1 chromatin reveals positioned nucleosomes separated by nuclease-sensitive regions.

Authors:  F Thoma; L W Bergman; R T Simpson
Journal:  J Mol Biol       Date:  1984-08-25       Impact factor: 5.469

4.  Dynamic changes in histone acetylation regulate origins of DNA replication.

Authors:  Ashwin Unnikrishnan; Philip R Gafken; Toshio Tsukiyama
Journal:  Nat Struct Mol Biol       Date:  2010-03-14       Impact factor: 15.369

  4 in total
  10 in total

1.  Cilium transition zone proteome reveals compartmentalization and differential dynamics of ciliopathy complexes.

Authors:  Samuel Dean; Flavia Moreira-Leite; Vladimir Varga; Keith Gull
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-12       Impact factor: 11.205

2.  Kinetoplastid kinetochore proteins KKT2 and KKT3 have unique centromere localization domains.

Authors:  Gabriele Marcianò; Midori Ishii; Olga O Nerusheva; Bungo Akiyoshi
Journal:  J Cell Biol       Date:  2021-06-03       Impact factor: 10.539

3.  Retention of the Native Epigenome in Purified Mammalian Chromatin.

Authors:  Andreas H Ehrensberger; Don-Marc Franchini; Philip East; Roger George; Nik Matthews; Sarah L Maslen; Jesper Q Svejstrup
Journal:  PLoS One       Date:  2015-08-06       Impact factor: 3.240

Review 4.  Mec1/ATR, the Program Manager of Nucleic Acids Inc.

Authors:  Wenyi Feng
Journal:  Genes (Basel)       Date:  2016-12-28       Impact factor: 4.096

5.  Trypanosome outer kinetochore proteins suggest conservation of chromosome segregation machinery across eukaryotes.

Authors:  Simon D'Archivio; Bill Wickstead
Journal:  J Cell Biol       Date:  2016-12-29       Impact factor: 10.539

6.  Genome-wide reconstitution of chromatin transactions reveals that RSC preferentially disrupts H2AZ-containing nucleosomes.

Authors:  Aylin Cakiroglu; Cedric R Clapier; Andreas H Ehrensberger; Elodie Darbo; Bradley R Cairns; Nicholas M Luscombe; Jesper Q Svejstrup
Journal:  Genome Res       Date:  2019-05-16       Impact factor: 9.043

7.  Redirecting meiotic DNA break hotspot determinant proteins alters localized spatial control of DNA break formation and repair.

Authors:  Randy W Hyppa; Joshua D Cho; Mridula Nambiar; Gerald R Smith
Journal:  Nucleic Acids Res       Date:  2022-01-25       Impact factor: 16.971

8.  Rvb1/Rvb2 proteins couple transcription and translation during glucose starvation.

Authors:  Yang S Chen; Wanfu Hou; Sharon Tracy; Alex T Harvey; Vince Harjono; Fan Xu; James J Moresco; John R Yates; Brian M Zid
Journal:  Elife       Date:  2022-09-15       Impact factor: 8.713

9.  Discovery of unconventional kinetochores in kinetoplastids.

Authors:  Bungo Akiyoshi; Keith Gull
Journal:  Cell       Date:  2014-02-27       Impact factor: 41.582

10.  The Proteomic Landscape of Centromeric Chromatin Reveals an Essential Role for the Ctf19CCAN Complex in Meiotic Kinetochore Assembly.

Authors:  Weronika E Borek; Nadine Vincenten; Eris Duro; Vasso Makrantoni; Christos Spanos; Krishna K Sarangapani; Flavia de Lima Alves; David A Kelly; Charles L Asbury; Juri Rappsilber; Adele L Marston
Journal:  Curr Biol       Date:  2020-11-05       Impact factor: 10.834

  10 in total

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