Literature DB >> 22178974

Growth and localization of polyhydroxybutyrate granules in Ralstonia eutropha.

Morgan Beeby1, Mimi Cho, JoAnne Stubbe, Grant J Jensen.   

Abstract

The bacterium Ralstonia eutropha forms cytoplasmic granules of polyhydroxybutyrate that are a source of biodegradable thermoplastic. While much is known about the biochemistry of polyhydroxybutyrate production, the cell biology of granule formation and growth remains unclear. Previous studies have suggested that granules form either in the inner membrane, on a central scaffold, or in the cytoplasm. Here we used electron cryotomography to monitor granule genesis and development in 3 dimensions (3-D) in a near-native, "frozen-hydrated" state in intact Ralstonia eutropha cells. Neither nascent granules within the cell membrane nor scaffolds were seen. Instead, granules of all sizes resided toward the center of the cytoplasm along the length of the cell and exhibited a discontinuous surface layer more consistent with a partial protein coating than either a lipid mono- or bilayer. Putatively fusing granules were also seen, suggesting that small granules are continually generated and then grow and merge. Together, these observations support a model of biogenesis wherein granules form in the cytoplasm coated not by phospholipid but by protein. Previous thin-section electron microscopy (EM), fluorescence microscopy, and atomic force microscopy (AFM) results to the contrary may reflect both differences in nucleoid condensation and specimen preparation-induced artifacts.

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Year:  2011        PMID: 22178974      PMCID: PMC3294789          DOI: 10.1128/JB.06125-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  52 in total

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Authors:  Siska Hermawan; Dieter Jendrossek
Journal:  FEMS Microbiol Lett       Date:  2007-01       Impact factor: 2.742

3.  Detection and characterization of protein aggregates by fluorescence microscopy.

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4.  The structure of FtsZ filaments in vivo suggests a force-generating role in cell division.

Authors:  Zhuo Li; Michael J Trimble; Yves V Brun; Grant J Jensen
Journal:  EMBO J       Date:  2007-10-18       Impact factor: 11.598

5.  The inherent property of polyhydroxyalkanoate synthase to form spherical PHA granules at the cell poles: the core region is required for polar localization.

Authors:  Verena Peters; Dorit Becher; Bernd H A Rehm
Journal:  J Biotechnol       Date:  2007-03-12       Impact factor: 3.307

Review 6.  Polar explorations Recent insights into the polarity of bacterial proteins.

Authors:  Sonia L Bardy; Janine R Maddock
Journal:  Curr Opin Microbiol       Date:  2007-11-19       Impact factor: 7.934

7.  Markov random field based automatic image alignment for electron tomography.

Authors:  Fernando Amat; Farshid Moussavi; Luis R Comolli; Gal Elidan; Kenneth H Downing; Mark Horowitz
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8.  PhaP is involved in the formation of a network on the surface of polyhydroxyalkanoate inclusions in Cupriavidus necator H16.

Authors:  Douglas Dennis; Vicki Sein; Edgar Martinez; Brian Augustine
Journal:  J Bacteriol       Date:  2007-11-02       Impact factor: 3.490

9.  Binding of the major phasin, PhaP1, from Ralstonia eutropha H16 to poly(3-hydroxybutyrate) granules.

Authors:  Liv Neumann; Francesco Spinozzi; Raffaele Sinibaldi; Franco Rustichelli; Markus Pötter; Alexander Steinbüchel
Journal:  J Bacteriol       Date:  2008-01-25       Impact factor: 3.490

Review 10.  Synthesis, storage and degradation of neutral lipids in yeast.

Authors:  Tibor Czabany; Karin Athenstaedt; Günther Daum
Journal:  Biochim Biophys Acta       Date:  2006-07-13
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  21 in total

1.  Proteomic phenotyping of Novosphingobium nitrogenifigens reveals a robust capacity for simultaneous nitrogen fixation, polyhydroxyalkanoate production, and resistance to reactive oxygen species.

Authors:  Anne-Marie Smit; Timothy J Strabala; Lifeng Peng; Pisana Rawson; Gareth Lloyd-Jones; T William Jordan
Journal:  Appl Environ Microbiol       Date:  2012-05-11       Impact factor: 4.792

2.  Development of a transferable bimolecular fluorescence complementation system for the investigation of interactions between poly(3-hydroxybutyrate) granule-associated proteins in Gram-negative bacteria.

Authors:  Daniel Pfeiffer; Dieter Jendrossek
Journal:  Appl Environ Microbiol       Date:  2013-02-22       Impact factor: 4.792

3.  Comparative proteome analysis reveals four novel polyhydroxybutyrate (PHB) granule-associated proteins in Ralstonia eutropha H16.

Authors:  Anna Sznajder; Daniel Pfeiffer; Dieter Jendrossek
Journal:  Appl Environ Microbiol       Date:  2014-12-29       Impact factor: 4.792

4.  Purification of polyhydroxybutyrate synthase from its native organism, Ralstonia eutropha: implications for the initiation and elongation of polymer formation in vivo.

Authors:  Mimi Cho; Christopher J Brigham; Anthony J Sinskey; JoAnne Stubbe
Journal:  Biochemistry       Date:  2012-03-07       Impact factor: 3.162

Review 5.  A new view into prokaryotic cell biology from electron cryotomography.

Authors:  Catherine M Oikonomou; Yi-Wei Chang; Grant J Jensen
Journal:  Nat Rev Microbiol       Date:  2016-02-29       Impact factor: 60.633

6.  Poly-3-Hydroxybutyrate Functionalization with BioF-Tagged Recombinant Proteins.

Authors:  Daniel Bello-Gil; Beatriz Maestro; Jennifer Fonseca; Nina Dinjaski; M Auxiliadora Prieto; Jesús M Sanz
Journal:  Appl Environ Microbiol       Date:  2018-01-31       Impact factor: 4.792

7.  Preparing samples from whole cells using focused-ion-beam milling for cryo-electron tomography.

Authors:  Felix R Wagner; Reika Watanabe; Ruud Schampers; Digvijay Singh; Hans Persoon; Miroslava Schaffer; Peter Fruhstorfer; Jürgen Plitzko; Elizabeth Villa
Journal:  Nat Protoc       Date:  2020-05-13       Impact factor: 13.491

8.  PhaM is the physiological activator of poly(3-hydroxybutyrate) (PHB) synthase (PhaC1) in Ralstonia eutropha.

Authors:  Daniel Pfeiffer; Dieter Jendrossek
Journal:  Appl Environ Microbiol       Date:  2013-11-08       Impact factor: 4.792

9.  Formation of polyphosphate by polyphosphate kinases and its relationship to poly(3-hydroxybutyrate) accumulation in Ralstonia eutropha strain H16.

Authors:  Tony Tumlirsch; Anna Sznajder; Dieter Jendrossek
Journal:  Appl Environ Microbiol       Date:  2015-09-25       Impact factor: 4.792

10.  Localization of poly(3-hydroxybutyrate) (PHB) granule-associated proteins during PHB granule formation and identification of two new phasins, PhaP6 and PhaP7, in Ralstonia eutropha H16.

Authors:  Daniel Pfeiffer; Dieter Jendrossek
Journal:  J Bacteriol       Date:  2012-08-24       Impact factor: 3.490

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