| Literature DB >> 22164239 |
Sajal Samanta1, Devawati Dutta, Angana Ghoshal, Sumi Mukhopadhyay, Bibhuti Saha, Shyam Sundar, Saulius Jarmalavicius, Michael Forgber, Chhabinath Mandal, Peter Walden, Chitra Mandal.
Abstract
Using a lectin, Achatinin-H, having preferential specificity for glycoproteins with terminalEntities:
Mesh:
Substances:
Year: 2011 PMID: 22164239 PMCID: PMC3229537 DOI: 10.1371/journal.pone.0028169
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Purification of 9-O-AcSGPs and identification of spectrin.
A representative SDS-PAGE (7.5%) profile of purified 9-O-AcSGPs from RBCVL. Lane M shows molecular weight standards. PMF spectra of tryptic fragments of two high molecular weight 9-O-AcSGPs were identified as α- (B) and β-spectrin (C) by MALDI-TOF MS. Each fragment is denoted by their m/z values and sequence range in human α- and β-spectrin.
Figure 2Purification and characterization of spectrin.
Purification of spectrin A representative SDS-PAGE (7.5%) profile of SpectrinN (2.0 µg, lane 1) and spectrinVL (2.0 µg, lane 2), purified from RBCN and RBCVL as described by Ungewickell et al [31]. Purified spectrinVL was further passed through an Achatinin-H-Sepharose 4B affinity column and 9-O-acetylated sialic acid containing spectrinVL (2.0 µg, lane 3) was purified as described in Materials and Methods. Lane M shows molecular weight standards. Presence of 9-O-AcSA as detected by Western blot analysis. Equal amounts (2 µg) of purified spectrinVL and spectrinN were transferred onto nitrocellulose membrane after SDS-PAGE (8.5%). The blots were incubated overnight at 4°C with Achatinin-H and processed as described in Materials and Methods. C. Equal amount (2 µg) of purified spectrinVL and spectrinN were separated both on 5 and 7.5% SDS-PAGE under similar conditions. Two dimensional (2D) gel electrophoresis of spectrin A representative 2D (pI range 4–7, 4–15% gradient) profile of purified spectrin (100 µg) from RBCVL after staining with Coomassie is shown.
Figure 3Identification of 60 kDa band.
The PMF spectra of tryptic fragments of 60 kDa glycoprotein. PMF spectra of tryptic fragments of 60 kDa were identified as N-terminal fragment of α-spectrin by MALDI-TOF MS. Each fragment is denoted by their m/z values and sequence range within the 955 amino acids of human α-spectrin (marked with yellow in Fig. S1). Confirmation of the sequence of the identified tryptic fragments by MALDI-TOF-TOF mass spectrometry. The MS/MS spectrum was analyzed with database-dependent MASCOT as well as database-independent Sequit! software systems yielding the same results. Two representative PSD spectra of the MS/MS analysis of the fragment (B) LQATYWYHR (m/z = 1237.6) and (C) HEDFEEAFTAQEEK (m/z = 1237.6) of α-spectrin and SGP-60. The N and C terminal fragment ions are denoted according to standard nomenclature and immonium ions displayed in single amino acid code.
The 24 tryptic fragments of 60 kDa band determined by MALDI-TOF-MS analysis.
| Mass [M+H]+ | Sequence range | Deviation from theoretical mass | Missed cleavage | Sequence |
| 1316.8079 | 17–27 | 0.14 | 0 | VLETAEEIQER |
| 1378.8979 | 49–59 | 0.19 | 0 | LEDSYHLQVFK |
| 1534.9679 | 49–60 | 0.17 | 1 | LEDSYHLQVFKR |
| 1374.8279 | 119–130 | 0.21 | 0 | FTMGHSAHEETK |
| 1452.9379 | 199–210 | 0.17 | 1 | KFEDFQVELVAK |
| 1324.8279 | 200–210 | 0.15 | 0 | FEDFQVELVAK |
| 1216.6979 | 239–248 | 0.13 | 0 | QNEVNAAWER |
| 1237.7579 | 366–374 | 0.14 | 0 | LQATYWYHR |
| 2240.4279 | 390–411 | 0.28 | 0 | TAAINADELPTDVAGGEVLLDR |
| 2532.3879 | 426–448 | 0.27 | 0 | FQSADETGQDLVNANHEASDEVR |
| 1339.7179 | 484–494 | 0.16 | 0 | DSEQVDSWMSR |
| 1355.7279 | 484–494 | 0.17 | 0 | DSEQVDSWMox.SR |
| 2476.5179 | 495–517 | 0.29 | 0 | QEAFLENEDLGNSLGSAEALLQK |
| 1709.9579 | 518–531 | 0.23 | 0 | HEDFEEAFTAQEEK |
| 2839.5879 | 678–701 | 0.21 | 1 | QKGTLHEANQQLQFENNAEDLQR |
| 2583.4879 | 680–701 | 0.27 | 0 | GTQLHEANQQLQFENNAEDLQR |
| 2604.5279 | 740–762 | 0.28 | 0 | QDQVDILTDLAAYFEEIGHPDSK |
| 1377.8679 | 837–848 | 0.12 | 0 | VILENIASHEPR |
| 1647.9479 | 859–873 | 0.20 | 0 | MVEEGHFAAEDVASR |
| 1663.9579 | 859–873 | 0.22 | 0 | Mox.VEEGHFAAEDVASR |
| 1191.7279 | 876–885 | 0.14 | 0 | SLNQNMESLR |
| 2447.4879 | 917–939 | 0.29 | 1 | EKEPIVDNTNYGADEEAAGALLK |
| 1968.2079 | 940–956 | 0.26 | 1 | KHEAFLLDLNSFGDSMox.K |
| 1840.0479 | 941–956 | 0.18 | 0 | HEAFLLDLNSFGDSMox.K |
The tryptic fragments matched the N-terminal portion of human erythrocytic α spectrin as compared to the protein sequences of the NCBI sequence database. The identification was confirmed by complete de novo sequencing of two fragments (shown in Figure 3 B–C). Mass [M+H]+ denotes the mono-isotopic masses of the fragment ions; sequence range refers to the alignment of the sequence of the denoted fragments with the α-spectrin reference sequence (gi: 119573202); deviation from theoretical mass is the mass difference between the measured mass and the mass calculated from the corresponding database sequence; missed cleavage refers to the missed trypsin cleavage sites in the identified fragment; sequence is the fragment sequence in one-letter code, Mox is oxidized methionine.
Figure 4Demonstration of N-and O-glycosylation.
Demonstration of N-and O-glycosylation of spectrin by enzyme deglycosylation. Equal amount (5 µg) of purified spectrinVL and spectrinN was treated with neuraminidase from Arthrobacter ureafaciens to remove the terminal sialic acids and subsequently desialylated spectrinVL and spectrinN was incubated separately with N-glycosidase F, O-glycosidase or a combination of N- and O-glycosidase as indicated. SpectrinVL/N before and after the respective enzyme treatments were analyzed by SDS-PAGE as described in Materials and Methods. Demonstration of sialylation, N- and O-glycosylation in 60 kDa fragment. Gel-eluted purified 60 kDa fragment (1.0 µg) was initially desialylated with Arthrobacter ureafaciens neuraminidase overnight at 37°C. Subsequently the desialylated 60 kDa fragment was treated separately with N-glycosidase F, O-glycosidase F or a combination of both and analyzed by SDS-PAGE (7.5%) along with the untreated protein as described in Materials and Methods. Gel was stained with silver staining method. Lane M shows molecular weight standards. Demonstration of N- and O-glycosylation by lectin binding with Fixed concentrations of 125I-spectrinVL/N were processed separately to demonstrate their binding with several Sepharose/agarose bound ConA, RCA, HPA, UEA, DBA and Jacalin lectins (25 µl bead volume) having different sugar-linkage specificity as described in Materials and Methods. Demonstration of N- and O-glycosylation by lectin binding with DIG-glycan. E. Equal amount (2.0 µg) of spectrinVL and spectrinN was dot blotted on NC-paper and analyzed by DIG-glycan and differentiation kit using several lectins (GNA, PNA, DSA) following manufacturer's protocol. F. Representative bar graph of densitometric scores of corresponding spots.
Figure 5Presence of Neu5Ac and Neu5,9Ac2 in spectrinVL by biochemical methods.
Enhanced sialylation demonstrated by IEF. Equal amounts (3.0 µg) of purified spectrinVL, 60 kDa band and spectrinN before and after removal of sialic acids were analyzed by IEF within a pH gradient of 3–10 and the respective bands visualized by silver staining. Lane M shows the pI markers. B–C. Enhanced sialylation in spectrin Equal amount (1.0 µg) of purified spectrinVL and spectrinN was analyzed by using DIG-glycan detection kits and total sialylation was compared based on the densitometric scores of spots (B). Representative bar graph of densitometric scores of corresponding spots (C). D–E. Detection of linkage-specific terminal sialic acids in spectrin Equal amount (2.0 µg) of spectrinVL and spectrinN was dot blotted on NC-paper and analyzed by DIG glycan and differentiation kit using SNA and MAA lectins following manufacturer's protocol (D). Densitometric scores of corresponding spots are shown as bar graph (E). F. Binding of To demonstrate the presence or absence of terminal sialic acids, a fixed concentrations of 125I-spectrinVL/N were analyzed by binding with Sepharose/agarose bound WGA, SNA, MAA, Achatinin-H (25 µl bead volume) having specificity towards linkage specific sialic acids as described in materials and methods. Bound radioactivity of 125I-spectrinVL/N was measured by Gamma-counter and represented as bar graphs. Detection of sialylated tryptic fragments in spectrin The α and β subunits of purified spectrinVL were digested separately by restricted amount of trypsin. Such controlled digested and extracted tryptic fragments were dried and redissolved and an aliquot was separated in SDS-PAGE (7.5%–15% gradient) (G). Subsequently the presence of sialic acids on resulting tryptic fragments was analyzed by binding with SNA-agarose and MAA-agarose separately and followed by electrophoresis on SDS-PAGE (7.5%–15% gradient) (H) as described in Materials and Methods. Lane M shows the molecular weight standerds.
Figure 6Presence of Neu5Ac and Neu5,9Ac2 in spectrinVL by analytical methods.
Thin layer chromatography (TLC). Glycosidically bound sialic acids of spectrinVL were subjected to acid hydrolysis, purified, separated on a TLC plate and detected by staining with orcinol/HCl spray reagent and baking at 180°C. Similarly processed free sialic acids released from BSM served as standard. Additionally, commercially available Neu5Ac was used as references. For comparison liberated sialic acids from purified spectrinN were similarly analyzed. Enhanced presence of Neu5Ac and Neu5,9Ac Glycosidically bound sialic acids released from spectrinVL by acid hydrolysis were derivatized with DMB and analyzed by fluorimetric HPLC before and after saponification as described in Materials and Methods. A representative chromatogram of the spectrinVL and spectrinN derived sialic acids showed the presence of fluorescent derivatives of free sialic acids. In parallel sialic acids of BSM similarly analyzed under identical conditions served as standard. Identification of sialic acids by MALDI-TOF MS. Fractions corresponding to peaks of Neu5Ac (C) and Neu5,9Ac2 (D) were collected after fluorimetric HPLC, spotted and analyzed by MALDI-TOF MS using DHBA matrix as described in Materials and Methods. Positive ion mode was used for mass-spectrometric analysis with 1000 laser shots per spot.
Potential glycosylation sites and solvent accessibility values of spectrinN.
| SpectrinN | Glycosylation sites | Accessible surface area [Å2] |
| α-spectrin | Asn-Lys-Thr [633–635] | 16.94 |
| Asn-Val-Thr [657–659] | 75.37 | |
| Asn-Thr-Ser [1625–1627] | 93.70 | |
| Asn-Leu-Ser [2077–2079] | 52.24 | |
| Thr-817 | 142.89 | |
| β-spectrin | Asn-Val-Thr [194–196] | 45.05 |
| Asn-Phe-Thr [197–199] | 21.97 |
N-glycosylation sites (Asn) are shown as the consensus sequence of three amino acids and O-glycosylation site (Thr) is shown as the single amino acid. Sequence numbering is done according to the human alpha spectrin , erythrocytic 1, isoform CRA_b (gi: 119573202, taken from NCBI protein sequence database).
Figure 7Space filling structural representation of GlcNAc in spectrinN.
Sugar moiety are colored by atoms (C = green, O = red, N = blue and H = white). The protein model is represented as conolly surface. A. N- glycosylation of α-spectrin is shown in yellow color at position Asn-1625. B. N- glycosylation of β-spectrin is shown in yellow color at position Asn-194. C. O- glycosylation of α-spectrin is shown in blue color at position Thr-817.
Figure 8Physicochemical study of structural modification of spectrinVL.
CD-spectra. Far-UV CD spectra of spectrinVL and spectrinN in phosphate buffer (20 mM, pH 7.0) indicating the molar residue ellipticity as a function of wavelength along with the buffer only. Binding of Various concentrations of 125I-spectrinVL/N were incubated with a constant amount of spectrin-depleted-IOVN followed by determination of specific binding as described in Materials and Methods.
Diagnostic features of patients with active visceral leishmaniasis (VL).
| Parameters | PatientVL (n = 30) | Normal (n = 30) |
|
| 20–40 | 20–40 |
|
| 32–40 | 50–60 |
|
| 4–6 | Not applicable |
|
| 1.0–2.5×106/µl | 4.0–6×106/µl |
|
| 3–4×103 | 5–10×103 |
|
| 4–5 | 10–12 |
|
| 4–5 | 1–3 |
|
| 7–10 | Not palpable |
|
| 3.5–4.2 | Negative |
|
| 0.95–1.38 | 0.19–0.24 |
|
| 85–90% | 0.08–0.12% |
|
| 0.85–1.2 | 0.19–0.24 |
|
| 1.1–1.8 | 0.21–0.28 |
|
| 77.05±3.6 | 57.42±3.49 |
4, >1 to 10 parasites per field.
Determined by flow cytometry using FITC-Achatinin-H [18].
Anti-9-O-AcSGP antibody was detected by using BSM as coating antigen as described elsewhere [30].
Parasite specific antibody was detected by using parasite lysate as coating antigen as described elsewhere [16].
Sialic acid content in serum was estimated by thiobarbituric acid method [54].