Literature DB >> 2216410

Phylogenetic tree of tRNAs using a simple algorithm.

M A Soto1, J Toha.   

Abstract

A simple method for phylogenetic tree construction is described. In this method each node is calculated considering the distance between the elements and the difference between these elements and an average element, allowing the selection of the most probable node. Two examples of tRNA phylogenies (E. coli set and Phe family) are analyzed, giving both reliable trees. Data from these dendrograms give support to the idea of an early cloverleaf arising.

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Year:  1990        PMID： 2216410     DOI： 10.1007/bf01808277

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN： 0169-6149            Impact factor:   1.950


  9 in total

1.  Changes in the amino acid code.

Authors:  T H Jukes
Journal:  Adv Space Res       Date:  1983       Impact factor: 2.152

2.  How old is the genetic code? Statistical geometry of tRNA provides an answer.

Authors:  M Eigen; B F Lindemann; M Tietze; R Winkler-Oswatitsch; A Dress; A von Haeseler
Journal:  Science       Date:  1989-05-12       Impact factor: 47.728

3.  Genetic system of chloroplasts.

Authors:  H Ozeki; K Ohyama; H Inokuchi; H Fukuzawa; T Kohchi; T Sano; K Nakahigashi; K Umesono
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1987

4.  Evolution of anticodons: variations in the genetic code.

Authors:  T H Jukes; S Osawa; A Muto; N Lehman
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1987

5.  The phylogeny of tRNA sequences provides evidence for ambiguity reduction in the origin of the genetic code.

Authors:  W M Fitch; K Upper
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1987

6.  Evolution of E. coli tRNA(Ile): evidence of derivation from other tRNAs.

Authors:  M P Staves; D P Bloch; J C Lacey
Journal:  Z Naturforsch C J Biosci       Date:  1987 Jan-Feb

7.  On the phylogeny of t-RNA's.

Authors:  R J Cedergren; J R Cordeau; P Robillard
Journal:  J Theor Biol       Date:  1972-11       Impact factor: 2.691

8.  Compilation of tRNA sequences.

Authors:  M Sprinzl; J Moll; F Meissner; T Hartmann
Journal:  Nucleic Acids Res       Date:  1985       Impact factor: 16.971

9.  Archetypical features in tRNA families.

Authors:  K Nicoghosian; M Bigras; D Sankoff; R Cedergren
Journal:  J Mol Evol       Date:  1987       Impact factor: 2.395
  9 in total
  1 in total

1.  Studying the evolutionary relationships and phylogenetic trees of 21 groups of tRNA sequences based on complex networks.

Authors:  Fangping Wei; Bowen Chen
Journal:  J Biol Phys       Date:  2011-09-30       Impact factor: 1.365
  1 in total

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