Literature DB >> 22158942

A general theoretical model for electron transfer reactions in complex systems.

Andrea Amadei1, Isabella Daidone, Massimiliano Aschi.   

Abstract

In this paper we present a general theoretical-computational model for treating electron transfer reactions in complex atomic-molecular systems. The underlying idea of the approach, based on unbiased first-principles calculations at the atomistic level, utilizes the definition and the construction of the Diabatic Perturbed states of the involved reactive partners (i.e. the quantum centres in our perturbation approach) as provided by the interaction with their environment, including their mutual interaction. In this way we reconstruct the true Adiabatic states of the reactive partners characterizing the electron transfer process as the fluctuation of the electronic density due to the fluctuating perturbation. Results obtained by using a combination of Molecular Dynamics simulation and the Perturbed Matrix Method on a prototypical intramolecular electron transfer (from 2-(9,9'-dimethyl)fluorene to the 2-naphthalene group separated by a steroidal 5-α-androstane skeleton) well illustrate the accuracy of the method in reproducing both the thermodynamics and the kinetics of the process.

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Year:  2011        PMID: 22158942     DOI: 10.1039/c1cp22309g

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  6 in total

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Authors:  Andrea Amadei; Massimiliano Aschi
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4.  Dynamics of Scabin toxin. A proposal for the binding mode of the DNA substrate.

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Journal:  PLoS One       Date:  2018-03-15       Impact factor: 3.240

5.  A quantitative connection of experimental and simulated folding landscapes by vibrational spectroscopy.

Authors:  Caitlin M Davis; Laura Zanetti-Polzi; Martin Gruebele; Andrea Amadei; R Brian Dyer; Isabella Daidone
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6.  Tuning Proton Transfer Thermodynamics in SARS-Cov-2 Main Protease: Implications for Catalysis and Inhibitor Design.

Authors:  Laura Zanetti-Polzi; Micholas Dean Smith; Chris Chipot; James C Gumbart; Diane L Lynch; Anna Pavlova; Jeremy C Smith; Isabella Daidone
Journal:  ChemRxiv       Date:  2020-11-06
  6 in total

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