Literature DB >> 22157006

Structural and mechanistic insights into the interaction of cytochrome P4503A4 with bromoergocryptine, a type I ligand.

Irina F Sevrioukova1, Thomas L Poulos.   

Abstract

Cytochrome P4503A4 (CYP3A4), a major human drug-metabolizing enzyme, is responsible for the oxidation and clearance of the majority of administered drugs. One of the CYP3A4 substrates is bromoergocryptine (BEC), a dopamine receptor agonist prescribed for the inhibition of prolactin secretion and treatment of Parkinson disease, type 2 diabetes, and several other pathological conditions. Here we present a 2.15 Å crystal structure of the CYP3A4-BEC complex in which the drug, a type I heme ligand, is bound in a productive mode. The manner of BEC binding is consistent with the in vivo metabolite analysis and identifies the 8' and 9' carbons of the proline ring as the primary sites of oxidation. The crystal structure predicts the importance of Arg(212) and Thr(224) for binding of the tripeptide and lysergic moieties of BEC, respectively, which we confirmed experimentally. Our data support a three-step BEC binding model according to which the drug binds first at a peripheral site without perturbing the heme spectrum and then translocates into the active site cavity, where formation of a hydrogen bond between Thr(224) and the N1 atom of the lysergic moiety is followed by a slower conformational readjustment of the tripeptide group modulated by Arg(212).

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Year:  2011        PMID: 22157006      PMCID: PMC3271004          DOI: 10.1074/jbc.M111.317081

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  31 in total

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Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

Review 2.  Twenty years of biochemistry of human P450s: purification, expression, mechanism, and relevance to drugs.

Authors:  F P Guengerich; N A Hosea; A Parikh; L C Bell-Parikh; W W Johnson; E M Gillam; T Shimada
Journal:  Drug Metab Dispos       Date:  1998-12       Impact factor: 3.922

3.  LIGSITE: automatic and efficient detection of potential small molecule-binding sites in proteins.

Authors:  M Hendlich; F Rippmann; G Barnickel
Journal:  J Mol Graph Model       Date:  1997-12       Impact factor: 2.518

4.  Alanine-scanning mutagenesis of a putative substrate recognition site in human cytochrome P450 3A4. Role of residues 210 and 211 in flavonoid activation and substrate specificity.

Authors:  G R Harlow; J R Halpert
Journal:  J Biol Chem       Date:  1997-02-28       Impact factor: 5.157

5.  Thermodynamic studies of substrate binding and spin transitions in human cytochrome P-450 3A4 expressed in yeast microsomes.

Authors:  J P Renaud; D R Davydov; K P Heirwegh; D Mansuy; G H Hui Bon Hoa
Journal:  Biochem J       Date:  1996-11-01       Impact factor: 3.857

6.  Defining CYP3A4 structural responses to substrate binding. Raman spectroscopic studies of a nanodisc-incorporated mammalian cytochrome P450.

Authors:  Piotr J Mak; Ilia G Denisov; Yelena V Grinkova; Stephen G Sligar; James R Kincaid
Journal:  J Am Chem Soc       Date:  2011-01-05       Impact factor: 15.419

Review 7.  Structures of cytochrome P450 3A4.

Authors:  Emily E Scott; James R Halpert
Journal:  Trends Biochem Sci       Date:  2005-01       Impact factor: 13.807

8.  Resolution of multiple substrate binding sites in cytochrome P450 3A4: the stoichiometry of the enzyme-substrate complexes probed by FRET and Job's titration.

Authors:  Harshica Fernando; James R Halpert; Dmitri R Davydov
Journal:  Biochemistry       Date:  2006-04-04       Impact factor: 3.162

9.  Structure and mechanism of the complex between cytochrome P4503A4 and ritonavir.

Authors:  Irina F Sevrioukova; Thomas L Poulos
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-11       Impact factor: 11.205

10.  High affinity of ergopeptides for cytochromes P450 3A. Importance of their peptide moiety for P450 recognition and hydroxylation of bromocriptine.

Authors:  M A Peyronneau; M Delaforge; R Riviere; J P Renaud; D Mansuy
Journal:  Eur J Biochem       Date:  1994-08-01
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  44 in total

1.  Oxidation of dihydrotestosterone by human cytochromes P450 19A1 and 3A4.

Authors:  Qian Cheng; Christal D Sohl; Francis K Yoshimoto; F Peter Guengerich
Journal:  J Biol Chem       Date:  2012-07-07       Impact factor: 5.157

2.  Steroid bioconjugation to a CYP3A4 allosteric site and its effect on substrate binding and coupling efficiency.

Authors:  Vanja Polic; Irina F Sevrioukova; Karine Auclair
Journal:  Arch Biochem Biophys       Date:  2018-06-26       Impact factor: 4.013

3.  Human mitochondrial cytochrome P450 27C1 is localized in skin and preferentially desaturates trans-retinol to 3,4-dehydroretinol.

Authors:  Kevin M Johnson; Thanh T N Phan; Matthew E Albertolle; F Peter Guengerich
Journal:  J Biol Chem       Date:  2017-07-12       Impact factor: 5.157

Review 4.  Current Approaches for Investigating and Predicting Cytochrome P450 3A4-Ligand Interactions.

Authors:  Irina F Sevrioukova; Thomas L Poulos
Journal:  Adv Exp Med Biol       Date:  2015       Impact factor: 2.622

Review 5.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

Review 6.  Nanodiscs in Membrane Biochemistry and Biophysics.

Authors:  Ilia G Denisov; Stephen G Sligar
Journal:  Chem Rev       Date:  2017-02-08       Impact factor: 60.622

7.  Use of Phenoxyaniline Analogues To Generate Biochemical Insights into the Interactio n of Polybrominated Diphenyl Ether with CYP2B Enzymes.

Authors:  Chao Chen; Jingbao Liu; James R Halpert; P Ross Wilderman
Journal:  Biochemistry       Date:  2017-12-19       Impact factor: 3.162

8.  Conformational selection is present in ligand binding to cytochrome P450 19A1 lipoprotein nanodiscs.

Authors:  Francisco Zárate-Pérez; John C Hackett
Journal:  J Inorg Biochem       Date:  2020-05-21       Impact factor: 4.155

9.  Conformational adaptation of human cytochrome P450 2B6 and rabbit cytochrome P450 2B4 revealed upon binding multiple amlodipine molecules.

Authors:  Manish B Shah; P Ross Wilderman; Jaime Pascual; Qinghai Zhang; C David Stout; James R Halpert
Journal:  Biochemistry       Date:  2012-09-04       Impact factor: 3.162

10.  Stereoselective formation and metabolism of 4-hydroxy-retinoic Acid enantiomers by cytochrome p450 enzymes.

Authors:  Jakob A Shimshoni; Arthur G Roberts; Michele Scian; Ariel R Topletz; Sean A Blankert; James R Halpert; Wendel L Nelson; Nina Isoherranen
Journal:  J Biol Chem       Date:  2012-10-15       Impact factor: 5.157

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