Literature DB >> 22156396

Draft genome sequence of Halomonas sp. strain HAL1, a moderately halophilic arsenite-oxidizing bacterium isolated from gold-mine soil.

Yanbing Lin1, Haoxin Fan, Xiuli Hao, Laurel Johnstone, Yao Hu, Gehong Wei, Hend A Alwathnani, Gejiao Wang, Christopher Rensing.   

Abstract

We report the draft genome sequence of arsenite-oxidizing Halomonas sp. strain HAL1, isolated from the soil of a gold mine. Genes encoding proteins involved in arsenic resistance and transformation, phosphate utilization and uptake, and betaine biosynthesis were identified. Their identification might help in understanding how arsenic and phosphate metabolism are intertwined.

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Year:  2012        PMID： 22156396      PMCID： PMC3256601          DOI： 10.1128/JB.06359-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

Review 1.  Bacterial osmoadaptation: the role of osmolytes in bacterial stress and virulence.

Authors:  Roy D Sleator; Colin Hill
Journal:  FEMS Microbiol Rev       Date:  2002-03       Impact factor: 16.408

2.  Molybdenum-containing arsenite oxidase of the chemolithoautotrophic arsenite oxidizer NT-26.

Authors:  Joanne M Santini; Rachel N vanden Hoven
Journal:  J Bacteriol       Date:  2004-03       Impact factor: 3.490

3.  A bacterium that can grow by using arsenic instead of phosphorus.

Authors:  Felisa Wolfe-Simon; Jodi Switzer Blum; Thomas R Kulp; Gwyneth W Gordon; Shelley E Hoeft; Jennifer Pett-Ridge; John F Stolz; Samuel M Webb; Peter K Weber; Paul C W Davies; Ariel D Anbar; Ronald S Oremland
Journal:  Science       Date:  2010-12-02       Impact factor: 47.728

4.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

5.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

6.  Arsenite oxidase aox genes from a metal-resistant beta-proteobacterium.

Authors:  Daniel Muller; Didier Lièvremont; Diliana Dancheva Simeonova; Jean-Claude Hubert; Marie-Claire Lett
Journal:  J Bacteriol       Date:  2003-01       Impact factor: 3.490

Review 7.  Osmoadaptation in bacteria.

Authors:  E A Galinski
Journal:  Adv Microb Physiol       Date:  1995       Impact factor: 3.517

8.  Life and death with arsenic. Arsenic life: an analysis of the recent report "A bacterium that can grow by using arsenic instead of phosphorus".

Authors:  Barry P Rosen; A Abdul Ajees; Timothy R McDermott
Journal:  Bioessays       Date:  2011-03-08       Impact factor: 4.345

9.  Halomonas boliviensis sp. nov., an alkalitolerant, moderate halophile isolated from soil around a Bolivian hypersaline lake.

Authors:  Jorge Quillaguamán; Rajni Hatti-Kaul; Bo Mattiasson; Maria Teresa Alvarez; Osvaldo Delgado
Journal:  Int J Syst Evol Microbiol       Date:  2004-05       Impact factor: 2.747

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  10 in total
  14 in total

1.  Draft genome sequence of Halomonas sp. strain KM-1, a moderately halophilic bacterium that produces the bioplastic poly(3-hydroxybutyrate).

Authors:  Yoshikazu Kawata; Kazunori Kawasaki; Yasushi Shigeri
Journal:  J Bacteriol       Date:  2012-05       Impact factor: 3.490

2.  Genome of halomonas strain GFAJ-1, a blueprint for fame or business as usual.

Authors:  Eun-Hae Kim; Christopher Rensing
Journal:  J Bacteriol       Date:  2012-01-20       Impact factor: 3.490

3.  Genome sequence of the moderately halotolerant, arsenite-oxidizing bacterium Pseudomonas stutzeri TS44.

Authors:  Xiangyang Li; Jing Gong; Yao Hu; Lin Cai; Laurel Johnstone; Gregor Grass; Christopher Rensing; Gejiao Wang
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

4.  Evolutionary patterns of carbohydrate transport and metabolism in Halomonas boliviensis as derived from its genome sequence: influences on polyester production.

Authors:  Daniel Guzmán; Andrea Balderrama-Subieta; Carla Cardona-Ortuño; Mónica Guevara-Martínez; Nataly Callisaya-Quispe; Jorge Quillaguamán
Journal:  Aquat Biosyst       Date:  2012-04-17

5.  Genome Sequence of Halomonas sp. Strain A3H3, Isolated from Arsenic-Rich Marine Sediments.

Authors:  Sandrine Koechler; Frédéric Plewniak; Valérie Barbe; Fabienne Battaglia-Brunet; Bernard Jost; Catherine Joulian; Muriel Philipps; Serge Vicaire; Stéphanie Vincent; Tao Ye; Philippe N Bertin
Journal:  Genome Announc       Date:  2013-10-10

6.  Domain organization of DNase from Thioalkalivibrio sp. provides insights into retention of activity in high salt environments.

Authors:  Gediminas Alzbutas; Milda Kaniusaite; Algirdas Grybauskas; Arunas Lagunavicius
Journal:  Front Microbiol       Date:  2015-07-01       Impact factor: 5.640

7.  Microbial Diversity and Its Relationship to Physicochemical Characteristics of the Water in Two Extreme Acidic Pit Lakes from the Iberian Pyrite Belt (SW Spain).

Authors:  Esther Santofimia; Elena González-Toril; Enrique López-Pamo; María Gomariz; Ricardo Amils; Angeles Aguilera
Journal:  PLoS One       Date:  2013-06-26       Impact factor: 3.240

8.  Genomic analysis reveals the biotechnological and industrial potential of levan producing halophilic extremophile, Halomonas smyrnensis AAD6T.

Authors:  Elif Diken; Tugba Ozer; Muzaffer Arikan; Zeliha Emrence; Ebru Toksoy Oner; Duran Ustek; Kazim Yalcin Arga
Journal:  Springerplus       Date:  2015-08-04

9.  Regulation of arsenite oxidation by the phosphate two-component system PhoBR in Halomonas sp. HAL1.

Authors:  Fang Chen; Yajing Cao; Sha Wei; Yanzhi Li; Xiangyang Li; Qian Wang; Gejiao Wang
Journal:  Front Microbiol       Date:  2015-09-09       Impact factor: 5.640

10.  A nanomolecular approach to decrease adhesion of biofouling-producing bacteria to graphene-coated material.

Authors:  Carolina Parra; Fernando Dorta; Edra Jimenez; Ricardo Henríquez; Cristian Ramírez; Rodrigo Rojas; Patricio Villalobos
Journal:  J Nanobiotechnology       Date:  2015-11-16       Impact factor: 10.435
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