Literature DB >> 22154516

Evolutionary informatics: unifying knowledge about the diversity of life.

Cynthia S Parr1, Robert Guralnick, Nico Cellinese, Roderic D M Page.   

Abstract

The accelerating growth of data and knowledge in evolutionary biology is indisputable. Despite this rapid progress, information remains scattered, poorly documented and in formats that impede discovery and integration. A grand challenge is the creation of a linked system of all evolutionary data, information and knowledge organized around Darwin's ever-growing Tree of Life. Such a system, accommodating topological disagreement where necessary, would consolidate taxon names, phenotypic and geographical distributional data across clades, and serve as an integrated community resource. The field of evolutionary informatics, reviewed here for the first time, has matured into a robust discipline that is developing the conceptual, infrastructure and community frameworks for meeting this grand challenge.
Copyright © 2011 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2011        PMID: 22154516     DOI: 10.1016/j.tree.2011.11.001

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN: 0169-5347            Impact factor:   17.712


  34 in total

1.  The challenges to inferring the regulators of biodiversity in deep time.

Authors:  Thomas H G Ezard; Tiago B Quental; Michael J Benton
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-04-05       Impact factor: 6.237

2.  A cybertaxonomic revision of the micro-landsnail genus Plectostoma Adam (Mollusca, Caenogastropoda, Diplommatinidae), from Peninsular Malaysia, Sumatra and Indochina.

Authors:  Thor-Seng Liew; Jaap Jan Vermeulen; Mohammad Effendi Bin Marzuki; Menno Schilthuizen
Journal:  Zookeys       Date:  2014-03-25       Impact factor: 1.546

3.  Challenges with using names to link digital biodiversity information.

Authors:  David Patterson; Dmitry Mozzherin; David Peter Shorthouse; Anne Thessen
Journal:  Biodivers Data J       Date:  2016-05-25

4.  VoSeq: a voucher and DNA sequence web application.

Authors:  Carlos Peña; Tobias Malm
Journal:  PLoS One       Date:  2012-06-12       Impact factor: 3.240

5.  TOLKIN--Tree of Life Knowledge and Information Network: filling a gap for collaborative research in biological systematics.

Authors:  Reed S Beaman; Greg H Traub; Christopher A Dell; Nestor Santiago; Jin Koh; Nico Cellinese
Journal:  PLoS One       Date:  2012-06-18       Impact factor: 3.240

6.  Evolutionary biology for the 21st century.

Authors:  Jonathan B Losos; Stevan J Arnold; Gill Bejerano; E D Brodie; David Hibbett; Hopi E Hoekstra; David P Mindell; Antónia Monteiro; Craig Moritz; H Allen Orr; Dmitri A Petrov; Susanne S Renner; Robert E Ricklefs; Pamela S Soltis; Thomas L Turner
Journal:  PLoS Biol       Date:  2013-01-08       Impact factor: 8.029

7.  A unified anatomy ontology of the vertebrate skeletal system.

Authors:  Wasila M Dahdul; James P Balhoff; David C Blackburn; Alexander D Diehl; Melissa A Haendel; Brian K Hall; Hilmar Lapp; John G Lundberg; Christopher J Mungall; Martin Ringwald; Erik Segerdell; Ceri E Van Slyke; Matthew K Vickaryous; Monte Westerfield; Paula M Mabee
Journal:  PLoS One       Date:  2012-12-10       Impact factor: 3.240

8.  High-throughput sequencing: a roadmap toward community ecology.

Authors:  Timothée Poisot; Bérangère Péquin; Dominique Gravel
Journal:  Ecol Evol       Date:  2013-03-11       Impact factor: 2.912

9.  Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.

Authors:  Arlin Stoltzfus; Hilmar Lapp; Naim Matasci; Helena Deus; Brian Sidlauskas; Christian M Zmasek; Gaurav Vaidya; Enrico Pontelli; Karen Cranston; Rutger Vos; Campbell O Webb; Luke J Harmon; Megan Pirrung; Brian O'Meara; Matthew W Pennell; Siavash Mirarab; Michael S Rosenberg; James P Balhoff; Holly M Bik; Tracy A Heath; Peter E Midford; Joseph W Brown; Emily Jane McTavish; Jeet Sukumaran; Mark Westneat; Michael E Alfaro; Aaron Steele; Greg Jordan
Journal:  BMC Bioinformatics       Date:  2013-05-13       Impact factor: 3.169

10.  Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis.

Authors:  Arlin Stoltzfus; Brian O'Meara; Jamie Whitacre; Ross Mounce; Emily L Gillespie; Sudhir Kumar; Dan F Rosauer; Rutger A Vos
Journal:  BMC Res Notes       Date:  2012-10-22
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