Literature DB >> 27346955

Challenges with using names to link digital biodiversity information.

David Patterson1, Dmitry Mozzherin2, David Peter Shorthouse3, Anne Thessen4.   

Abstract

Entities:  

Year:  2016        PMID： 27346955      PMCID： PMC4910497          DOI： 10.3897/BDJ.4.e8080

Source DB:  PubMed          Journal:  Biodivers Data J        ISSN： 1314-2828


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  33 in total

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2.  Revision of the genus Cryptomonas (Cryptophyceae): a combination of molecular phylogeny and morphology provides insights into a long-hidden dimorphism.

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Review 3.  DNA barcoding in animal species: progress, potential and pitfalls.

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4.  Biology contravenes taxonomy in the myxozoa: new discoveries show alternation of invertebrate and vertebrate hosts.

Authors:  K Wolf; M E Markiw
Journal:  Science       Date:  1984-09-28       Impact factor: 47.728

5.  Reasoning over taxonomic change: exploring alignments for the Perelleschus use case.

Authors:  Nico M Franz; Mingmin Chen; Shizhuo Yu; Parisa Kianmajd; Shawn Bowers; Bertram Ludäscher
Journal:  PLoS One       Date:  2015-02-20       Impact factor: 3.240

6.  Type material in the NCBI Taxonomy Database.

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Journal:  Nucleic Acids Res       Date:  2014-11-14       Impact factor: 19.160

7.  The LifeWatch approach to the exploration of distributed species information.

Authors:  Daniel Fuentes; Nicola Fiore
Journal:  Zookeys       Date:  2014-12-12       Impact factor: 1.546

8.  Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi.

Authors:  Conrad L Schoch; Barbara Robbertse; Vincent Robert; Duong Vu; Gianluigi Cardinali; Laszlo Irinyi; Wieland Meyer; R Henrik Nilsson; Karen Hughes; Andrew N Miller; Paul M Kirk; Kessy Abarenkov; M Catherine Aime; Hiran A Ariyawansa; Martin Bidartondo; Teun Boekhout; Bart Buyck; Qing Cai; Jie Chen; Ana Crespo; Pedro W Crous; Ulrike Damm; Z Wilhelm De Beer; Bryn T M Dentinger; Pradeep K Divakar; Margarita Dueñas; Nicolas Feau; Katerina Fliegerova; Miguel A García; Zai-Wei Ge; Gareth W Griffith; Johannes Z Groenewald; Marizeth Groenewald; Martin Grube; Marieka Gryzenhout; Cécile Gueidan; Liangdong Guo; Sarah Hambleton; Richard Hamelin; Karen Hansen; Valérie Hofstetter; Seung-Beom Hong; Jos Houbraken; Kevin D Hyde; Patrik Inderbitzin; Peter R Johnston; Samantha C Karunarathna; Urmas Kõljalg; Gábor M Kovács; Ekaphan Kraichak; Krisztina Krizsan; Cletus P Kurtzman; Karl-Henrik Larsson; Steven Leavitt; Peter M Letcher; Kare Liimatainen; Jian-Kui Liu; D Jean Lodge; Janet Jennifer Luangsa-ard; H Thorsten Lumbsch; Sajeewa S N Maharachchikumbura; Dimuthu Manamgoda; María P Martín; Andrew M Minnis; Jean-Marc Moncalvo; Giuseppina Mulè; Karen K Nakasone; Tuula Niskanen; Ibai Olariaga; Tamás Papp; Tamás Petkovits; Raquel Pino-Bodas; Martha J Powell; Huzefa A Raja; Dirk Redecker; J M Sarmiento-Ramirez; Keith A Seifert; Bhushan Shrestha; Soili Stenroos; Benjamin Stielow; Sung-Oui Suh; Kazuaki Tanaka; Leho Tedersoo; M Teresa Telleria; Dhanushka Udayanga; Wendy A Untereiner; Javier Diéguez Uribeondo; Krishna V Subbarao; Csaba Vágvölgyi; Cobus Visagie; Kerstin Voigt; Donald M Walker; Bevan S Weir; Michael Weiß; Nalin N Wijayawardene; Michael J Wingfield; J P Xu; Zhu L Yang; Ning Zhang; Wen-Ying Zhuang; Scott Federhen
Journal:  Database (Oxford)       Date:  2014-06-30       Impact factor: 3.451

9.  Scientific names of organisms: attribution, rights, and licensing.

Authors:  David J Patterson; Willi Egloff; Donat Agosti; David Eades; Nico Franz; Gregor Hagedorn; Jonathan A Rees; David P Remsen
Journal:  BMC Res Notes       Date:  2014-02-04

10.  A Standardized Reference Data Set for Vertebrate Taxon Name Resolution.

Authors:  Paula F Zermoglio; Robert P Guralnick; John R Wieczorek
Journal:  PLoS One       Date:  2016-01-13       Impact factor: 3.240
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Journal:  Syst Biol       Date:  2018-07-01       Impact factor: 15.683

2.  "gnparser": a powerful parser for scientific names based on Parsing Expression Grammar.

Authors:  Dmitry Y Mozzherin; Alexander A Myltsev; David J Patterson
Journal:  BMC Bioinformatics       Date:  2017-05-26       Impact factor: 3.169

3.  Constructing a biodiversity terminological inventory.

Authors:  Nhung T H Nguyen; Axel J Soto; Georgios Kontonatsios; Riza Batista-Navarro; Sophia Ananiadou
Journal:  PLoS One       Date:  2017-04-17       Impact factor: 3.240

4.  A dataset of egg size and shape from more than 6,700 insect species.

Authors:  Samuel H Church; Seth Donoughe; Bruno A S de Medeiros; Cassandra G Extavour
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Review 5.  Bioinformatics for Marine Products: An Overview of Resources, Bottlenecks, and Perspectives.

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Journal:  Mar Drugs       Date:  2019-10-11       Impact factor: 5.118

6.  Relationship of taxonomic error to frequency of observation.

Authors:  James B Stribling; Erik W Leppo
Journal:  PLoS One       Date:  2020-11-12       Impact factor: 3.240

7.  Citizen science and online data: Opportunities and challenges for snake ecology and action against snakebite.

Authors:  Andrew M Durso; Rafael Ruiz de Castañeda; Camille Montalcini; M Rosa Mondardini; Jose L Fernandez-Marques; François Grey; Martin M Müller; Peter Uetz; Benjamin M Marshall; Russell J Gray; Christopher E Smith; Donald Becker; Michael Pingleton; Jose Louies; Arthur D Abegg; Jeannot Akuboy; Gabriel Alcoba; Jennifer C Daltry; Omar M Entiauspe-Neto; Paul Freed; Marco Antonio de Freitas; Xavier Glaudas; Song Huang; Tianqi Huang; Yatin Kalki; Yosuke Kojima; Anne Laudisoit; Kul Prasad Limbu; José G Martínez-Fonseca; Konrad Mebert; Mark-Oliver Rödel; Sara Ruane; Manuel Ruedi; Andreas Schmitz; Sarah A Tatum; Frank Tillack; Avinash Visvanathan; Wolfgang Wüster; Isabelle Bolon
Journal:  Toxicon X       Date:  2021-06-22

8.  Automated assembly of a reference taxonomy for phylogenetic data synthesis.

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Journal:  Biodivers Data J       Date:  2017-05-22
  8 in total

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