Literature DB >> 22144392

Pattern-oriented modelling: a 'multi-scope' for predictive systems ecology.

Volker Grimm1, Steven F Railsback.   

Abstract

Modern ecology recognizes that modelling systems across scales and at multiple levels-especially to link population and ecosystem dynamics to individual adaptive behaviour-is essential for making the science predictive. 'Pattern-oriented modelling' (POM) is a strategy for doing just this. POM is the multi-criteria design, selection and calibration of models of complex systems. POM starts with identifying a set of patterns observed at multiple scales and levels that characterize a system with respect to the particular problem being modelled; a model from which the patterns emerge should contain the right mechanisms to address the problem. These patterns are then used to (i) determine what scales, entities, variables and processes the model needs, (ii) test and select submodels to represent key low-level processes such as adaptive behaviour, and (iii) find useful parameter values during calibration. Patterns are already often used in these ways, but a mini-review of applications of POM confirms that making the selection and use of patterns more explicit and rigorous can facilitate the development of models with the right level of complexity to understand ecological systems and predict their response to novel conditions.

Mesh:

Year:  2012        PMID: 22144392      PMCID: PMC3223804          DOI: 10.1098/rstb.2011.0180

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  13 in total

1.  Complex dynamics and phase synchronization in spatially extended ecological systems.

Authors:  B Blasius; A Huppert; L Stone
Journal:  Nature       Date:  1999-05-27       Impact factor: 49.962

2.  Self-organized critical forest-fire model.

Authors: 
Journal:  Phys Rev Lett       Date:  1992-09-14       Impact factor: 9.161

Review 3.  Pattern-oriented modeling of agent-based complex systems: lessons from ecology.

Authors:  Volker Grimm; Eloy Revilla; Uta Berger; Florian Jeltsch; Wolf M Mooij; Steven F Railsback; Hans-Hermann Thulke; Jacob Weiner; Thorsten Wiegand; Donald L DeAngelis
Journal:  Science       Date:  2005-11-11       Impact factor: 47.728

4.  Neutral metacommunity models predict fish diversity patterns in Mississippi-Missouri basin.

Authors:  Rachata Muneepeerakul; Enrico Bertuzzo; Heather J Lynch; William F Fagan; Andrea Rinaldo; Ignacio Rodriguez-Iturbe
Journal:  Nature       Date:  2008-05-08       Impact factor: 49.962

Review 5.  Ecosystem oceanography for global change in fisheries.

Authors:  Philippe Maurice Cury; Yunne-Jai Shin; Benjamin Planque; Joël Marcel Durant; Jean-Marc Fromentin; Stephanie Kramer-Schadt; Nils Christian Stenseth; Morgane Travers; Volker Grimm
Journal:  Trends Ecol Evol       Date:  2008-04-22       Impact factor: 17.712

6.  Unifying wildfire models from ecology and statistical physics.

Authors:  Richard D Zinck; Volker Grimm
Journal:  Am Nat       Date:  2009-11       Impact factor: 3.926

7.  Individual-based ecology of coastal birds.

Authors:  Richard A Stillman; John D Goss-Custard
Journal:  Biol Rev Camb Philos Soc       Date:  2009-11-24

Review 8.  Statistical inference for stochastic simulation models--theory and application.

Authors:  Florian Hartig; Justin M Calabrese; Björn Reineking; Thorsten Wiegand; Andreas Huth
Journal:  Ecol Lett       Date:  2011-06-17       Impact factor: 9.492

9.  Disentangling the formation of contrasting tree-line physiognomies combining model selection and Bayesian parameterization for simulation models.

Authors:  Isabel Martínez; Thorsten Wiegand; J Julio Camarero; Enric Batllori; Emilia Gutiérrez
Journal:  Am Nat       Date:  2011-05       Impact factor: 3.926

Review 10.  Linking biodiversity and ecosystems: towards a unifying ecological theory.

Authors:  Michel Loreau
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-01-12       Impact factor: 6.237

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  49 in total

Review 1.  Systems approaches in global change and biogeochemistry research.

Authors:  Pete Smith; Fabrizio Albanito; Madeleine Bell; Jessica Bellarby; Sergey Blagodatskiy; Arindam Datta; Marta Dondini; Nuala Fitton; Helen Flynn; Astley Hastings; Jon Hillier; Edward O Jones; Matthias Kuhnert; Dali R Nayak; Mark Pogson; Mark Richards; Gosia Sozanska-Stanton; Shifeng Wang; Jagadeesh B Yeluripati; Emily Bottoms; Chris Brown; Jenny Farmer; Diana Feliciano; Cui Hao; Andy Robertson; Sylvia Vetter; Hon Man Wong; Jo Smith
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-01-19       Impact factor: 6.237

2.  Making predictive ecology more relevant to policy makers and practitioners.

Authors:  William J Sutherland; Robert P Freckleton
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-01-19       Impact factor: 6.237

3.  Predictive ecology: systems approaches.

Authors:  Matthew R Evans; Ken J Norris; Tim G Benton
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-01-19       Impact factor: 6.237

Review 4.  A framework for predicting impacts on ecosystem services from (sub)organismal responses to chemicals.

Authors:  Valery E Forbes; Chris J Salice; Bjorn Birnir; Randy J F Bruins; Peter Calow; Virginie Ducrot; Nika Galic; Kristina Garber; Bret C Harvey; Henriette Jager; Andrew Kanarek; Robert Pastorok; Steve F Railsback; Richard Rebarber; Pernille Thorbek
Journal:  Environ Toxicol Chem       Date:  2017-04       Impact factor: 3.742

5.  Island Rule, quantitative genetics and brain-body size evolution in Homo floresiensis.

Authors:  José Alexandre Felizola Diniz-Filho; Pasquale Raia
Journal:  Proc Biol Sci       Date:  2017-06-28       Impact factor: 5.349

6.  Multistability of model and real dryland ecosystems through spatial self-organization.

Authors:  Robbin Bastiaansen; Olfa Jaïbi; Vincent Deblauwe; Maarten B Eppinga; Koen Siteur; Eric Siero; Stéphane Mermoz; Alexandre Bouvet; Arjen Doelman; Max Rietkerk
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-15       Impact factor: 11.205

7.  Extrapolating ecotoxicological effects from individuals to populations: a generic approach based on Dynamic Energy Budget theory and individual-based modeling.

Authors:  Benjamin T Martin; Tjalling Jager; Roger M Nisbet; Thomas G Preuss; Monika Hammers-Wirtz; Volker Grimm
Journal:  Ecotoxicology       Date:  2013-02-22       Impact factor: 2.823

8.  Pattern-oriented modelling as a novel way to verify and validate functional-structural plant models: a demonstration with the annual growth module of avocado.

Authors:  Ming Wang; Neil White; Volker Grimm; Helen Hofman; David Doley; Grant Thorp; Bronwen Cribb; Ella Wherritt; Liqi Han; John Wilkie; Jim Hanan
Journal:  Ann Bot       Date:  2018-04-18       Impact factor: 4.357

9.  Parameter estimation for functional-structural plant models when data are scarce: using multiple patterns for rejecting unsuitable parameter sets.

Authors:  Ming Wang; Neil White; Jim Hanan; Di He; Enli Wang; Bronwen Cribb; Darren J Kriticos; Dean Paini; Volker Grimm
Journal:  Ann Bot       Date:  2020-09-14       Impact factor: 4.357

10.  Using Multiple Scale Spatio-Temporal Patterns for Validating Spatially Explicit Agent-Based Models.

Authors:  Jeon-Young Kang; Jared Aldstadt
Journal:  Int J Geogr Inf Sci       Date:  2018-10-19       Impact factor: 4.186

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