Literature DB >> 22142948

Mapping Partners Master Drug Dictionary to RxNorm using an NLP-based approach.

Li Zhou1, Joseph M Plasek, Lisa M Mahoney, Frank Y Chang, Dana DiMaggio, Roberto A Rocha.   

Abstract

OBJECTIVE: To develop an automated method based on natural language processing (NLP) to facilitate the creation and maintenance of a mapping between RxNorm and a local medication terminology for interoperability and meaningful use purposes.
METHODS: We mapped 5961 terms from Partners Master Drug Dictionary (MDD) and 99 of the top prescribed medications to RxNorm. The mapping was conducted at both term and concept levels using an NLP tool, called MTERMS, followed by a manual review conducted by domain experts who created a gold standard mapping. The gold standard was used to assess the overall mapping between MDD and RxNorm and evaluate the performance of MTERMS.
RESULTS: Overall, 74.7% of MDD terms and 82.8% of the top 99 terms had an exact semantic match to RxNorm. Compared to the gold standard, MTERMS achieved a precision of 99.8% and a recall of 73.9% when mapping all MDD terms, and a precision of 100% and a recall of 72.6% when mapping the top prescribed medications.
CONCLUSION: The challenges and gaps in mapping MDD to RxNorm are mainly due to unique user or application requirements for representing drug concepts and the different modeling approaches inherent in the two terminologies. An automated approach based on NLP followed by human expert review is an efficient and feasible way for conducting dynamic mapping.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22142948     DOI: 10.1016/j.jbi.2011.11.006

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  12 in total

1.  Evaluation of RxNorm for Medication Clinical Decision Support.

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Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

2.  Natural Language Processing Combined with ICD-9-CM Codes as a Novel Method to Study the Epidemiology of Allergic Drug Reactions.

Authors:  Aleena Banerji; Kenneth H Lai; Yu Li; Rebecca R Saff; Carlos A Camargo; Kimberly G Blumenthal; Li Zhou
Journal:  J Allergy Clin Immunol Pract       Date:  2019-12-16

3.  Consensus Development of a Modern Ontology of Emergency Department Presenting Problems-The Hierarchical Presenting Problem Ontology (HaPPy).

Authors:  Steven Horng; Nathaniel R Greenbaum; Larry A Nathanson; James C McClay; Foster R Goss; Jeffrey A Nielson
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4.  Hospital Readmission and Social Risk Factors Identified from Physician Notes.

Authors:  Amol S Navathe; Feiran Zhong; Victor J Lei; Frank Y Chang; Margarita Sordo; Maxim Topaz; Shamkant B Navathe; Roberto A Rocha; Li Zhou
Journal:  Health Serv Res       Date:  2017-03-13       Impact factor: 3.402

5.  Automated identification of drug and food allergies entered using non-standard terminology.

Authors:  Richard H Epstein; Paul St Jacques; Michael Stockin; Brian Rothman; Jesse M Ehrenfeld; Joshua C Denny
Journal:  J Am Med Inform Assoc       Date:  2013-06-07       Impact factor: 4.497

6.  Food entries in a large allergy data repository.

Authors:  Joseph M Plasek; Foster R Goss; Kenneth H Lai; Jason J Lau; Diane L Seger; Kimberly G Blumenthal; Paige G Wickner; Sarah P Slight; Frank Y Chang; Maxim Topaz; David W Bates; Li Zhou
Journal:  J Am Med Inform Assoc       Date:  2015-09-17       Impact factor: 4.497

7.  An evaluation of a natural language processing tool for identifying and encoding allergy information in emergency department clinical notes.

Authors:  Foster R Goss; Joseph M Plasek; Jason J Lau; Diane L Seger; Frank Y Chang; Li Zhou
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

Review 8.  Can antiepileptic efficacy and epilepsy variables be studied from electronic health records? A review of current approaches.

Authors:  Barbara M Decker; Chloé E Hill; Steven N Baldassano; Pouya Khankhanian
Journal:  Seizure       Date:  2021-01-13       Impact factor: 3.184

9.  An effective method of large scale ontology matching.

Authors:  Gayo Diallo
Journal:  J Biomed Semantics       Date:  2014-10-28

10.  Drug Normalization for Cancer Therapeutic and Druggable Genome Target Discovery.

Authors:  Guoqian Jiang; Sunghwan Sohn; Michael T Zimmermann; Chen Wang; Hongfang Liu; Christopher G Chute
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2015-03-25
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