Literature DB >> 22139476

Some findings relevant to the mechanistic interpretation in the case of predictive models for carcinogenicity based on the counter propagation artificial neural network.

Natalja Fjodorova1, Marjana Novič.   

Abstract

The goal of the study was to contribute to a better mechanistic understanding of so-called "general" QSAR models for non-congeneric chemicals based on the counter propagation artificial neural network (CP ANN). Possible mechanisms of action was proofed using the Toxtree expert system based on structural alerts (SAs) for carcinogenicity. We have illustrated how statistically selected MDL descriptors, which refer to topological characteristics as well as to polarizability and charge distribution related to reactivity, are correlated with particular chemical classes (containing carcinogenic SA) with the recognized mechanistic link to the carcinogenic activity and consequently with the carcinogenic potency. Mechanistic insight in CP ANN models was demonstrated using an inherent mapping technique (i.e. Kohonen maps).

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Year:  2011        PMID: 22139476     DOI: 10.1007/s10822-011-9500-7

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  9 in total

1.  Predicting the carcinogenic potential of pharmaceuticals in rodents using molecular structural similarity and E-state indices.

Authors:  Joseph F Contrera; Edwin J Matthews; R Daniel Benz
Journal:  Regul Toxicol Pharmacol       Date:  2003-12       Impact factor: 3.271

2.  Three new consensus QSAR models for the prediction of Ames genotoxicity.

Authors:  Joseph R Votano; Marc Parham; Lowell H Hall; Lemont B Kier; Scott Oloff; Alexander Tropsha; Qian Xie; Weida Tong
Journal:  Mutagenesis       Date:  2004-09       Impact factor: 3.000

3.  Classification of the carcinogenicity of N-nitroso compounds based on support vector machines and linear discriminant analysis.

Authors:  Feng Luan; Ruisheng Zhang; Chunyan Zhao; Xiaojun Yao; Mancang Liu; Zhide Hu; Botao Fan
Journal:  Chem Res Toxicol       Date:  2005-02       Impact factor: 3.739

Review 4.  Structure-activity relationship studies of chemical mutagens and carcinogens: mechanistic investigations and prediction approaches.

Authors:  Romualdo Benigni
Journal:  Chem Rev       Date:  2005-05       Impact factor: 60.622

Review 5.  Predictive models for carcinogenicity and mutagenicity: frameworks, state-of-the-art, and perspectives.

Authors:  E Benfenati; R Benigni; D M Demarini; C Helma; D Kirkland; T M Martin; P Mazzatorta; G Ouédraogo-Arras; A M Richard; B Schilter; W G E J Schoonen; R D Snyder; C Yang
Journal:  J Environ Sci Health C Environ Carcinog Ecotoxicol Rev       Date:  2009-04       Impact factor: 3.781

6.  Quantitative and qualitative models for carcinogenicity prediction for non-congeneric chemicals using CP ANN method for regulatory uses.

Authors:  Natalja Fjodorova; Marjan Vračko; Marjan Tušar; Aneta Jezierska; Marjana Novič; Ralph Kühne; Gerrit Schüürmann
Journal:  Mol Divers       Date:  2009-08-15       Impact factor: 2.943

Review 7.  Mechanisms of chemical carcinogenicity and mutagenicity: a review with implications for predictive toxicology.

Authors:  Romualdo Benigni; Cecilia Bossa
Journal:  Chem Rev       Date:  2011-01-25       Impact factor: 60.622

8.  QSARS of mutagens and carcinogens: two case studies illustrating problems in the construction of models for noncongeneric chemicals.

Authors:  R Benigni; A M Richard
Journal:  Mutat Res       Date:  1996-11-04       Impact factor: 2.433

9.  New public QSAR model for carcinogenicity.

Authors:  Natalja Fjodorova; Marjan Vracko; Marjana Novic; Alessandra Roncaglioni; Emilio Benfenati
Journal:  Chem Cent J       Date:  2010-07-29       Impact factor: 4.215

  9 in total

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