Literature DB >> 22139189

Crystallization and preliminary X-ray crystallographic analysis of a helicase-like domain from a tomato mosaic virus replication protein.

Hongyu Xiang1, Mayumi Niiyama, Shigeru Sugiyama, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Yusuke Mori, Masayuki Ishikawa, Hiroyoshi Matsumura, Etsuko Katoh.   

Abstract

Tomato mosaic virus belongs to the genus Tobamovirus in the alphavirus-like superfamily of positive-strand RNA viruses. The alphavirus-like superfamily includes many plant and animal viruses of agronomical and clinical importance. These viruses encode replication-associated proteins that contain a putative superfamily 1 helicase domain. No three-dimensional structures for this domain have been determined to date. Here, the crystallization and preliminary X-ray diffraction analysis of the 130K helicase domain are reported. Diffraction data were collected and processed to 2.05 and 1.75 Å resolution from native and selenomethionine-labelled crystals, respectively. The crystals belonged to the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 85.8, b = 128.3, c = 40.7 Å.

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Year:  2011        PMID: 22139189      PMCID: PMC3232162          DOI: 10.1107/S174430911104231X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  21 in total

1.  Dengue virus NS3 serine protease. Crystal structure and insights into interaction of the active site with substrates by molecular modeling and structural analysis of mutational effects.

Authors:  H M Murthy; S Clum; R Padmanabhan
Journal:  J Biol Chem       Date:  1999-02-26       Impact factor: 5.157

2.  ARP/wARP and automatic interpretation of protein electron density maps.

Authors:  Richard J Morris; Anastassis Perrakis; Victor S Lamzin
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

3.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

4.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

Review 5.  Binding and unwinding: SF3 viral helicases.

Authors:  Alison Burgess Hickman; Fred Dyda
Journal:  Curr Opin Struct Biol       Date:  2005-02       Impact factor: 6.809

Review 6.  Structure and mechanism of helicases and nucleic acid translocases.

Authors:  Martin R Singleton; Mark S Dillingham; Dale B Wigley
Journal:  Annu Rev Biochem       Date:  2007       Impact factor: 23.643

7.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 8.  Replication of tobacco mosaic virus RNA.

Authors:  K W Buck
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1999-03-29       Impact factor: 6.237

9.  Crystal structure of Dengue virus NS3 protease in complex with a Bowman-Birk inhibitor: implications for flaviviral polyprotein processing and drug design.

Authors:  H M Murthy; K Judge; L DeLucas; R Padmanabhan
Journal:  J Mol Biol       Date:  2000-08-25       Impact factor: 5.469

10.  Oligomerization and activity of the helicase domain of the tobacco mosaic virus 126- and 183-kilodalton replicase proteins.

Authors:  Sameer P Goregaoker; James N Culver
Journal:  J Virol       Date:  2003-03       Impact factor: 5.103

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  2 in total

1.  Binding studies between cytosinpeptidemycin and the superfamily 1 helicase protein of tobacco mosaic virus.

Authors:  Xiangyang Li; Kai Chen; Di Gao; Dongmei Wang; Maoxi Huang; Hengmin Zhu; Jinxin Kang
Journal:  RSC Adv       Date:  2018-05-23       Impact factor: 4.036

2.  Crystal structure of the superfamily 1 helicase from Tomato mosaic virus.

Authors:  Masaki Nishikiori; Shigeru Sugiyama; Hongyu Xiang; Mayumi Niiyama; Kazuhiro Ishibashi; Tsuyoshi Inoue; Masayuki Ishikawa; Hiroyoshi Matsumura; Etsuko Katoh
Journal:  J Virol       Date:  2012-05-09       Impact factor: 5.103

  2 in total

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