Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 Cultivated single-stranded DNA phages that infect marine Bacteroidetes prove difficult to detect with DNA-binding stains.

Literature DB >> 22138992

Cultivated single-stranded DNA phages that infect marine Bacteroidetes prove difficult to detect with DNA-binding stains.

Karin Holmfeldt¹, Duško Odić, Matthew B Sullivan, Mathias Middelboe, Lasse Riemann.

Abstract

This is the first description of cultivated icosahedral single-stranded DNA (ssDNA) phages isolated on heterotrophic marine bacterioplankton and with Bacteroidetes hosts. None of the 8 phages stained well with DNA-binding stains, suggesting that in situ abundances of ssDNA phages are drastically underestimated using conventional methods for enumeration.

Entities: Species

Mesh：

Substances：
DNA, Single-Stranded

Year: 2011 PMID： 22138992 PMCID： PMC3264134 DOI： 10.1128/AEM.06580-11

Source DB: PubMed Journal: Appl Environ Microbiol ISSN： 0099-2240 Impact factor: 4.792

14 in total

1. Application of digital image analysis and flow cytometry to enumerate marine viruses stained with SYBR gold.

Authors: F Chen; J R Lu; B J Binder; Y C Liu; R E Hodson
Journal: Appl Environ Microbiol Date: 2001-02 Impact factor: 4.792

2. A dilution technique for the direct measurement of viral production: a comparison in stratified and tidally mixed coastal waters.

Authors: S W Wilhelm; S M Brigden; C A Suttle
Journal: Microb Ecol Date: 2002-01-23 Impact factor: 4.552

3. Optimization of procedures for counting viruses by flow cytometry.

Authors: Corina P D Brussaard
Journal: Appl Environ Microbiol Date: 2004-03 Impact factor: 4.792

4. Biodiversity and biogeography of phages in modern stromatolites and thrombolites.

Authors: Christelle Desnues; Beltran Rodriguez-Brito; Steve Rayhawk; Scott Kelley; Tuong Tran; Matthew Haynes; Hong Liu; Mike Furlan; Linda Wegley; Betty Chau; Yijun Ruan; Dana Hall; Florent E Angly; Robert A Edwards; Linlin Li; Rebecca Vega Thurber; R Pamela Reid; Janet Siefert; Valeria Souza; David L Valentine; Brandon K Swan; Mya Breitbart; Forest Rohwer
Journal: Nature Date: 2008-03-02 Impact factor: 49.962

5. Metagenomic analysis of the microbial community associated with the coral Porites astreoides.

Authors: Linda Wegley; Robert Edwards; Beltran Rodriguez-Brito; Hong Liu; Forest Rohwer
Journal: Environ Microbiol Date: 2007-11 Impact factor: 5.491

6. Previously unknown virus infects marine diatom.

Authors: Keizo Nagasaki; Yuji Tomaru; Yoshitake Takao; Kensho Nishida; Yoko Shirai; Hidekazu Suzuki; Tamotsu Nagumo
Journal: Appl Environ Microbiol Date: 2005-07 Impact factor: 4.792

7. Isolation and characterization of a single-stranded DNA virus infecting Chaetoceros lorenzianus Grunow.

Authors: Yuji Tomaru; Yoshitake Takao; Hidekazu Suzuki; Tamotsu Nagumo; Kanae Koike; Keizo Nagasaki
Journal: Appl Environ Microbiol Date: 2011-06-10 Impact factor: 4.792

8. Large variabilities in host strain susceptibility and phage host range govern interactions between lytic marine phages and their Flavobacterium hosts.

Authors: Karin Holmfeldt; Mathias Middelboe; Ole Nybroe; Lasse Riemann
Journal: Appl Environ Microbiol Date: 2007-08-31 Impact factor: 4.792

9. Genetic instability and fragmentation of a stealth viral genome.

Authors: W J Martin
Journal: Pathobiology Date: 1996 Impact factor: 4.342

10. The marine viromes of four oceanic regions.

Authors: Florent E Angly; Ben Felts; Mya Breitbart; Peter Salamon; Robert A Edwards; Craig Carlson; Amy M Chan; Matthew Haynes; Scott Kelley; Hong Liu; Joseph M Mahaffy; Jennifer E Mueller; Jim Nulton; Robert Olson; Rachel Parsons; Steve Rayhawk; Curtis A Suttle; Forest Rohwer
Journal: PLoS Biol Date: 2006-11 Impact factor: 8.029

26 in total

1. Variations in abundance, genome size, morphology, and functional role of the virioplankton in Lakes Annecy and Bourget over a 1-year period.

Authors: Xu Zhong; Angia Siram Pradeep Ram; Jonathan Colombet; Stéphan Jacquet
Journal: Microb Ecol Date: 2013-11-20 Impact factor: 4.552

Review 2. Rising to the challenge: accelerated pace of discovery transforms marine virology.

Authors: Jennifer R Brum; Matthew B Sullivan
Journal: Nat Rev Microbiol Date: 2015-02-02 Impact factor: 60.633

3. An inexpensive, accurate, and precise wet-mount method for enumerating aquatic viruses.

Authors: Brady R Cunningham; Jennifer R Brum; Sarah M Schwenck; Matthew B Sullivan; Seth G John
Journal: Appl Environ Microbiol Date: 2015-02-20 Impact factor: 4.792

4. Membrane vesicles in sea water: heterogeneous DNA content and implications for viral abundance estimates.

Authors: Steven J Biller; Lauren D McDaniel; Mya Breitbart; Everett Rogers; John H Paul; Sallie W Chisholm
Journal: ISME J Date: 2016-11-08 Impact factor: 10.302

5. Full-field interferometry for counting and differentiating aquatic biotic nanoparticles: from laboratory to Tara Oceans.

Authors: Martine Boccara; Yasmina Fedala; Catherine Venien Bryan; Marc Bailly-Bechet; Chris Bowler; Albert Claude Boccara
Journal: Biomed Opt Express Date: 2016-08-29 Impact factor: 3.732

10. Discovery of two novel viruses expands the diversity of single-stranded DNA and single-stranded RNA viruses infecting a cosmopolitan marine diatom.

Authors: Kei Kimura; Yuji Tomaru
Journal: Appl Environ Microbiol Date: 2014-12-01 Impact factor: 4.792