Literature DB >> 22138764

A DNA barcode library for Korean Chironomidae (Insecta: Diptera) and indexes for defining barcode gap.

Sungmin Kim1, Kyo-Hong Song, Han-Il Ree, Won Kim.   

Abstract

Non-biting midges (Diptera: Chironomidae) are a diverse population that commonly causes respiratory allergies in humans. Chironomid larvae can be used to indicate freshwater pollution, but accurate identification on the basis of morphological characteristics is difficult. In this study, we constructed a mitochondrial cytochrome c oxidase subunit I (COI)-based DNA barcode library for Korean chironomids. This library consists of 211 specimens from 49 species, including adults and unidentified larvae. The interspecies and intraspecies COI sequence variations were analyzed. Sophisticated indexes were developed in order to properly evaluate indistinct barcode gaps that are created by insufficient sampling on both the interspecies and intraspecies levels and by variable mutation rates across taxa. In a variety of insect datasets, these indexes were useful for re-evaluating large barcode datasets and for defining COI barcode gaps. The COI-based DNA barcode library will provide a rapid and reliable tool for the molecular identification of Korean chironomid species. Furthermore, this reverse-taxonomic approach will be improved by the continuous addition of other speceis' sequences to the library.

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Year:  2011        PMID: 22138764      PMCID: PMC3887743          DOI: 10.1007/s10059-012-2151-2

Source DB:  PubMed          Journal:  Mol Cells        ISSN: 1016-8478            Impact factor:   5.034


  32 in total

1.  Mitochondrial pseudogenes: evolution's misplaced witnesses.

Authors:  D Bensasson; D -X. Zhang; D L. Hartl; G M. Hewitt
Journal:  Trends Ecol Evol       Date:  2001-06-01       Impact factor: 17.712

2.  The promise of DNA barcoding for taxonomy.

Authors:  Paul D N Hebert; T Ryan Gregory
Journal:  Syst Biol       Date:  2005-10       Impact factor: 15.683

3.  TaxI: a software tool for DNA barcoding using distance methods.

Authors:  Dirk Steinke; Miguel Vences; Walter Salzburger; Axel Meyer
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-10-29       Impact factor: 6.237

4.  Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+C-content biases.

Authors:  K Tamura
Journal:  Mol Biol Evol       Date:  1992-07       Impact factor: 16.240

5.  The use of mean instead of smallest interspecific distances exaggerates the size of the "barcoding gap" and leads to misidentification.

Authors:  Rudolf Meier; Guanyang Zhang; Farhan Ali
Journal:  Syst Biol       Date:  2008-10       Impact factor: 15.683

6.  Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified.

Authors:  Hojun Song; Jennifer E Buhay; Michael F Whiting; Keith A Crandall
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-29       Impact factor: 11.205

Review 7.  Chironomid midge allergy.

Authors:  X Baur
Journal:  Arerugi       Date:  1992-02

8.  Teratogenic versus mutagenic abnormalities in chironomid larvae exposed to zinc and lead.

Authors:  Edward A Martinez; Barry C Moore; John Schaumloffel; Nairanjana Dasgupta
Journal:  Arch Environ Contam Toxicol       Date:  2004-08       Impact factor: 2.804

9.  DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.

Authors:  O Folmer; M Black; W Hoeh; R Lutz; R Vrijenhoek
Journal:  Mol Mar Biol Biotechnol       Date:  1994-10

10.  Does the DNA barcoding gap exist? - a case study in blue butterflies (Lepidoptera: Lycaenidae).

Authors:  Martin Wiemers; Konrad Fiedler
Journal:  Front Zool       Date:  2007-03-07       Impact factor: 3.172

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  4 in total

1.  Complete mitochondrial genome of Chironomus nipponensis, new record from China (Diptera: Chironomidae).

Authors:  Mi Shen; Yufei Li; Yuping Yao; Yue Fu
Journal:  Mitochondrial DNA B Resour       Date:  2022-06-24       Impact factor: 0.610

2.  Diversity and DNA Barcode Analysis of Chironomids (Diptera: Chironomidae) from Large Rivers in South Korea.

Authors:  Hyo Jeong Kang; Min Jeong Baek; Ji Hyoun Kang; Yeon Jae Bae
Journal:  Insects       Date:  2022-03-31       Impact factor: 3.139

3.  DNA Barcoding of Chironomid Larvae (Diptera: Chironomidae) from Large Rivers in South Korea to Facilitate Freshwater Biomonitoring and Public Health Surveillance.

Authors:  Hyo Jeong Kang; Min Jeong Baek; Ji Hyoun Kang; Yeon Jae Bae
Journal:  Int J Environ Res Public Health       Date:  2022-09-23       Impact factor: 4.614

4.  An Asiatic Chironomid in Brazil: morphology, DNA barcode and bionomics.

Authors:  Gizelle Amora; Neusa Hamada; Lívia Maria Fusari; Vanderly Andrade-Souza
Journal:  Zookeys       Date:  2015-07-27       Impact factor: 1.546

  4 in total

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