Literature DB >> 22135665

Single-molecule gold-nanoparticle tracking.

Alexander R Dunn, James A Spudich.   

Abstract

Gold nanoparticles, like single fluorophores, can be used to locate single molecules with nanometer accuracy. Unlike an optical trap, the gold particle label does not exert an external load, which is important for studying diffusive processes. Thus, a gold particle can be used analogously to a single fluorophore, providing similar information but with submillisecond time resolution. The features of gold-nanoparticle tracking (high temporal resolution, small label size, and lack of applied force) facilitate the characterization of structural properties of short-lived intermediates, as shown by our work with myosin V. This protocol provides details for gold-nanoparticle-tracking experiments, including flow cell construction, microscopy, and data analysis, along with a brief outline of actin and myosin preparation. Although details particular to our experiment are given, the approach should be generally applicable.

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Year:  2011        PMID: 22135665      PMCID: PMC4799655          DOI: 10.1101/pdb.prot066977

Source DB:  PubMed          Journal:  Cold Spring Harb Protoc        ISSN: 1559-6095


  25 in total

1.  Resolution of distinct rotational substeps by submillisecond kinetic analysis of F1-ATPase.

Authors:  R Yasuda; H Noji; M Yoshida; K Kinosita; H Itoh
Journal:  Nature       Date:  2001-04-19       Impact factor: 49.962

2.  Single-target molecule detection with nonbleaching multicolor optical immunolabels.

Authors:  S Schultz; D R Smith; J J Mock; D A Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-01       Impact factor: 11.205

3.  Single molecule high-resolution colocalization of Cy3 and Cy5 attached to macromolecules measures intramolecular distances through time.

Authors:  L Stirling Churchman; Zeynep Okten; Ronald S Rock; John F Dawson; James A Spudich
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-24       Impact factor: 11.205

4.  A molecular ruler based on plasmon coupling of single gold and silver nanoparticles.

Authors:  Carsten Sönnichsen; Björn M Reinhard; Jan Liphardt; A Paul Alivisatos
Journal:  Nat Biotechnol       Date:  2005-05-22       Impact factor: 54.908

5.  Light-scattering submicroscopic particles as highly fluorescent analogs and their use as tracer labels in clinical and biological applications.

Authors:  J Yguerabide; E E Yguerabide
Journal:  Anal Biochem       Date:  1998-09-10       Impact factor: 3.365

6.  The kinetic mechanism of myosin V.

Authors:  E M De La Cruz; A L Wells; S S Rosenfeld; E M Ostap; H L Sweeney
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

7.  High-resolution tracking of microtubule motility driven by a single kinesin motor.

Authors:  F Malik; D Brillinger; R D Vale
Journal:  Proc Natl Acad Sci U S A       Date:  1994-05-10       Impact factor: 11.205

8.  In vitro assays of processive myosin motors.

Authors:  R S Rock; M Rief; A D Mehta; J A Spudich
Journal:  Methods       Date:  2000-12       Impact factor: 3.608

9.  Myosin VI walks hand-over-hand along actin.

Authors:  Zeynep Okten; L Stirling Churchman; Ronald S Rock; James A Spudich
Journal:  Nat Struct Mol Biol       Date:  2004-08-01       Impact factor: 15.369

Review 10.  Walking with myosin V.

Authors:  James R Sellers; Claudia Veigel
Journal:  Curr Opin Cell Biol       Date:  2005-12-27       Impact factor: 8.382

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  3 in total

1.  Colocalization of fluorescent probes: accurate and precise registration with nanometer resolution.

Authors:  L Stirling Churchman; James A Spudich
Journal:  Cold Spring Harb Protoc       Date:  2012-02-01

2.  Interferometric Scattering Microscopy for the Study of Molecular Motors.

Authors:  J Andrecka; Y Takagi; K J Mickolajczyk; L G Lippert; J R Sellers; W O Hancock; Y E Goldman; P Kukura
Journal:  Methods Enzymol       Date:  2016-10-10       Impact factor: 1.600

3.  Structural dynamics of myosin 5 during processive motion revealed by interferometric scattering microscopy.

Authors:  Joanna Andrecka; Jaime Ortega Arroyo; Yasuharu Takagi; Gabrielle de Wit; Adam Fineberg; Lachlan MacKinnon; Gavin Young; James R Sellers; Philipp Kukura
Journal:  Elife       Date:  2015-03-06       Impact factor: 8.140

  3 in total

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