| Literature DB >> 22134401 |
Rudolf Słota1, Małgorzata A Broda, Gabriela Dyrda, Krzysztof Ejsmont, Giuseppe Mele.
Abstract
Structural parameters of a range of over 100 meso-substituted zinc porphyrins were reviewed and compared to show how far the nature of the functional group may affect the interatomic distances and bond angles within the porphyrin core. It was proved that even despite evident deformations of the molecular structure, involving twisting of the porphyrin's central plane, the coupled π-bonding system remains flexible and stable. DFT calculations were applied to a number of selected porphyrins representative for the reviewed compounds to emphasize the relevance of theoretical methods in structural investigations of complex macrocyclic molecular systems. Experimental and DFT-simulated IR spectral data were reported and analyzed in context of the individual molecular features introduced by the meso substituents into the porphyrin moiety base. Raw experimental spectral data, including ¹H- and ¹³C-NMR, UV-Vis, FTIR, XRD, and other relevant physicochemical details have been provided for a specially chosen reference zinc porphyrin functionalized by tert-butylphenyl groups.Entities:
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Year: 2011 PMID: 22134401 PMCID: PMC6264692 DOI: 10.3390/molecules16129957
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1General structure of the tetra-meso-substituted Zn-porphyrins (OMe = methoxy; tBu = tert-butyl).
Figure 2Molecular structure of diverse Zn-pophyrins (derived from crystallographic data). Structures (a) and (b) refer to ZnTBPP [7]; (c) Cyanophenyl analogue (R = 1, X = CN) [9]; (d) Cyclohexyl analogue (R = 2) [10]; (e) Bent pyrrole units of the porphyrin core, adapted from [11]; two opposite nitrogen atoms have been highlighted as blue balls to emphasize the distortion.
Average interatomic distances within the pyrrole subunit, meso-bridges and Zn-N for the model compound ZnTBPP (R = 1, X = tBu) and diverse zinc porphyrin molecules (acc. to Figure 1); "crystal" applies to values calculated from real crystallographic data reported elsewhere and "DFT" refers to theoretical results obtained in this work. For R = 1 the data represent average values of 105 diverse molecules analyzed.
| Porphyrin type | Zn-N | Cα-N | Cα-Cβ | Cβ-Cβ | Cα-Cμ | |
|---|---|---|---|---|---|---|
| ZnTBPP (crystal) | [ | 2.04 | 1.38 | 1.44 | 1.36 | 1.40 |
| ZnTBPP (DFT) | 2.07 | 1.40 | 1.46 | 1.37 | 1.42 | |
| R = | [ | 2.04 | 1.38 | 1.44 | 1.35 | 1.40 |
| R = | [ | 2.03 | 1.38 | 1.44 | 1.35 | 1.40 |
| R = | [ | 2.02 | 1.36 | 1.43 | 1.33 | 1.38 |
Core perimeter and average Cμ-R distance in selected tetra-meso-substituted zinc porphyrins: Experimental (exp.) and DFT-derived results (all values in Å); porphyrin structures according to Figure 1; references to literature apply exclusively to experimental data.
| Porphyrin type | References | Core perimeter (exp.) | Core perimeter (DFT) | Cμ-R distance (exp.) | Cμ-R distance (DFT) |
|---|---|---|---|---|---|
| R = H | -1) | 22.37 | -1) | 1.09 | |
| R = | [ | 22.22 | 22.50 | 1.50 | 1.50 |
| R = | [ | 22.14 | 22.49 | 1.48 | 1.50 |
| R = | [ | 22.24 | 22.50 | 1.50 | 1.50 |
| R = | [ | 22.24 | 22.49 | 1.50 | 1.50 |
| R = | [ | 22.28 | 22.50 | 1.51 | 1.50 |
| 2) R = | [ | 22.24 | 22.50 | 1.50 | 1.50 |
| R = | [ | 22.29 | 22.57 | 1.53 | 1.54 |
| R = | [ | 21.99 | 22.49 | 1.47 | 1.49 |
1) crystal data not available; 2) ZnTBPP.
Figure 3SEM micrographs of ZnTBPP crystals. (a) ×500; (b) ×10,000 (enlargement of arrow-pointed area).
Figure 4Experimental FTIR spectrum of ZnTBPP and the simulated IR spectrum obtained from DFT calculations.
Calculated frequencies (ν) of IR stretching vibrations (not scaled) assigned to the Cα-Cμ-Cα bridges and (tentatively) to Cμ-R oscillations for diverse meso-substituted Zn-porphyrins (according to Figure 1). The first-row frequencies ( font) apply to coupled diverse vibration modes, Cα-Cμ and Cβ-Cβ (see also Table SI-1, Supplementary Information appendix).
| ν, cm−1 | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Oscillation mode | R = H | R = 1 and X as below | R = 2 | R = 3 | |||||
| H | F | CN | OH | OMe | tBu | ||||
| Cα-Cμ | |||||||||
| 1539 | 1544 | 1546 | 1547 | 1546 | 1549 | 1533 | 1538 | ||
| 1597 | 1520 | 1527 | 1531 | 1529 | 1529 | 1531 | |||
| Cμ-R | 3204 | 1648 | 1649 | 1655 | 1661 | 1658 | 1658 | 1414 | 1603 |
| 1254 | 1253 | 1254 | 1254 | 1254 | 1258 | 1179 | 1191 | ||
Figure 5Infrared spectra calculated for selected Zn-porphyrins (raw results, not scaled). (a) Effect of the meso-substituent type. General molecular structure is shown; (b) Effect of the X-group in phenyl-meso-substituents.